Wall clock time and date at job start Mon Mar 30 2020 02:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86805 * 119.99945 * 2 1 4 4 H 1.48492 * 109.46986 * 275.41523 * 3 2 1 5 5 H 1.48501 * 109.47136 * 35.41467 * 3 2 1 6 6 H 1.48501 * 109.46958 * 155.41510 * 3 2 1 7 7 C 1.39943 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00342 * 341.70596 * 7 2 1 9 9 C 1.41401 * 119.99619 * 161.71400 * 7 2 1 10 10 C 1.40738 * 120.24108 * 150.48088 * 9 7 2 11 11 C 1.37596 * 119.73976 * 180.27286 * 10 9 7 12 12 C 1.38657 * 120.25440 * 359.74942 * 11 10 9 13 13 C 1.38619 * 120.49699 * 359.97019 * 12 11 10 14 14 C 1.50694 * 119.87529 * 180.02562 * 13 12 11 15 15 H 1.08995 * 109.87978 * 200.44458 * 14 13 12 16 16 C 1.54320 * 109.88987 * 79.24901 * 14 13 12 17 17 C 1.55146 * 103.01912 * 218.31124 * 16 14 13 18 18 C 1.54909 * 101.65172 * 35.65266 * 17 16 14 19 19 N 1.47443 * 109.88906 * 321.47827 * 14 13 12 20 20 C 1.37641 * 120.24924 * 0.02756 * 13 12 11 21 21 H 0.97001 * 119.99889 * 359.97438 * 1 2 3 22 22 H 1.07997 * 120.13432 * 0.02562 * 10 9 7 23 23 H 1.08009 * 119.87589 * 179.71777 * 11 10 9 24 24 H 1.07996 * 119.75104 * 180.02562 * 12 11 10 25 25 H 1.09007 * 110.70296 * 336.69079 * 16 14 13 26 26 H 1.08993 * 110.71042 * 99.92492 * 16 14 13 27 27 H 1.08992 * 110.99015 * 277.55773 * 17 16 14 28 28 H 1.08999 * 111.02040 * 153.75809 * 17 16 14 29 29 H 1.09003 * 110.36637 * 204.09984 * 18 17 16 30 30 H 1.08998 * 110.46796 * 81.80723 * 18 17 16 31 31 H 1.00902 * 111.00535 * 240.68374 * 19 14 13 32 32 H 1.07993 * 120.12851 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3753 2.1125 -1.3938 5 1 1.5016 2.6170 0.8113 6 1 3.5923 1.4099 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5089 -2.1238 0.2926 9 6 3.3684 -1.2427 -0.3848 10 6 4.2363 -2.2091 0.1569 11 6 5.5595 -2.2260 -0.2199 12 6 6.0376 -1.2990 -1.1336 13 6 5.1904 -0.3464 -1.6780 14 6 5.7247 0.6540 -2.6703 15 1 5.0628 1.5186 -2.7179 16 6 5.8414 0.0006 -4.0635 17 6 7.1576 0.6023 -4.6225 18 6 8.0255 0.6994 -3.3430 19 7 7.0791 1.0803 -2.2729 20 6 3.8631 -0.3107 -1.3156 21 1 -0.4850 0.8401 0.0004 22 1 3.8662 -2.9320 0.8687 23 1 6.2286 -2.9638 0.1979 24 1 7.0776 -1.3200 -1.4240 25 1 5.9198 -1.0831 -3.9755 26 1 4.9942 0.2771 -4.6910 27 1 6.9843 1.5886 -5.0526 28 1 7.6133 -0.0656 -5.3536 29 1 8.7922 1.4650 -3.4619 30 1 8.4836 -0.2640 -3.1192 31 1 7.1094 2.0740 -2.1003 32 1 3.2049 0.4325 -1.7406 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072201558.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:57 Heat of formation + Delta-G solvation = -6.661093 kcal Electronic energy + Delta-G solvation = -14353.002367 eV Core-core repulsion = 12083.534801 eV Total energy + Delta-G solvation = -2269.467566 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37765 -38.55318 -35.46310 -32.62865 -32.06765 -30.96235 -28.52022 -26.98343 -23.39232 -22.98318 -22.01587 -20.68934 -19.11980 -17.73711 -17.45317 -16.40744 -16.23183 -15.50008 -15.25131 -14.64554 -14.44351 -14.17983 -13.72637 -13.55039 -13.29914 -12.76581 -12.65587 -12.50282 -12.20033 -12.08193 -11.97042 -11.70005 -11.49777 -11.35562 -10.95796 -9.43271 -9.38114 -9.25608 -8.88392 -6.47633 0.82573 0.90822 1.22673 1.38080 1.47640 2.12272 2.61602 3.31090 3.54334 3.76781 3.92129 4.13581 4.28413 4.37918 4.47173 4.63283 4.66410 4.77917 4.85849 4.95475 5.02968 5.04467 5.11411 5.17844 5.31939 5.41826 5.64750 5.90625 5.93255 5.95842 6.18589 6.29894 6.46057 6.57476 6.79221 6.89149 8.20950 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.033581 B = 0.010079 C = 0.008689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.593823 B = 2777.414726 C = 3221.574547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.048 3.952 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.491 4.491 8 H 0.053 0.947 9 C 0.069 3.931 10 C -0.227 4.227 11 C -0.092 4.092 12 C -0.190 4.190 13 C -0.038 4.038 14 C 0.116 3.884 15 H 0.054 0.946 16 C -0.130 4.130 17 C -0.142 4.142 18 C 0.050 3.950 19 N -0.686 5.686 20 C -0.245 4.245 21 H 0.292 0.708 22 H 0.098 0.902 23 H 0.127 0.873 24 H 0.121 0.879 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.345 0.655 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.795 4.789 -7.759 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.165 4.165 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.522 4.522 8 H 0.071 0.929 9 C 0.067 3.933 10 C -0.246 4.246 11 C -0.110 4.110 12 C -0.209 4.209 13 C -0.038 4.038 14 C 0.006 3.994 15 H 0.072 0.928 16 C -0.169 4.169 17 C -0.181 4.181 18 C -0.079 4.079 19 N -0.315 5.315 20 C -0.265 4.265 21 H 0.102 0.898 22 H 0.116 0.884 23 H 0.144 0.856 24 H 0.139 0.861 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.162 0.838 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.660 4.326 -7.314 16.088 hybrid contribution -0.901 0.919 -0.282 1.318 sum 12.759 5.246 -7.596 15.748 Atomic orbital electron populations 1.69733 1.09047 1.31181 1.38341 1.26751 0.95285 1.03997 0.90484 0.85484 0.79480 0.76815 0.79241 1.18518 1.20445 1.18128 1.19442 0.94735 0.95500 1.42491 0.92867 1.17844 0.92602 0.92419 0.90477 1.21212 0.94370 1.03825 1.05196 1.21066 0.94604 0.98257 0.97049 1.20549 0.99109 0.98377 1.02880 1.19660 0.92121 0.95801 0.96255 1.20986 0.90446 0.95152 0.92830 0.92824 1.22794 0.99216 1.00726 0.94139 1.23122 0.94679 1.01734 0.98567 1.22946 0.94768 1.02149 0.88041 1.61394 1.04440 1.21474 1.44207 1.20941 0.96236 1.04892 1.04411 0.89795 0.88421 0.85551 0.86059 0.91639 0.90960 0.90441 0.89156 0.89247 0.90998 0.83795 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.88 13.93 21.83 0.30 -48.58 16 2 C 0.05 2.71 5.40 85.26 0.46 3.17 16 3 Si 0.97 45.08 24.52 68.60 1.68 46.76 16 4 H -0.26 -11.38 6.71 99.48 0.67 -10.72 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.26 -12.46 6.86 99.48 0.68 -11.78 16 7 C -0.49 -29.02 9.57 23.46 0.22 -28.80 16 8 H 0.05 3.37 8.06 -2.91 -0.02 3.34 16 9 C 0.07 3.70 5.11 -21.29 -0.11 3.59 16 10 C -0.23 -11.05 9.80 22.73 0.22 -10.82 16 11 C -0.09 -3.83 10.02 22.22 0.22 -3.61 16 12 C -0.19 -7.65 9.29 22.46 0.21 -7.44 16 13 C -0.04 -1.58 4.84 -19.92 -0.10 -1.67 16 14 C 0.12 3.83 3.55 44.51 0.16 3.99 16 15 H 0.05 1.81 8.02 -2.39 -0.02 1.80 16 16 C -0.13 -3.60 6.46 31.78 0.21 -3.39 16 17 C -0.14 -2.80 7.08 31.98 0.23 -2.57 16 18 C 0.05 1.02 7.57 86.77 0.66 1.68 16 19 N -0.69 -18.84 6.22 -486.20 -3.02 -21.86 16 20 C -0.25 -12.08 6.80 22.73 0.15 -11.92 16 21 H 0.29 14.96 8.30 -92.71 -0.77 14.19 16 22 H 0.10 4.61 8.06 -2.91 -0.02 4.59 16 23 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 24 H 0.12 4.32 7.67 -2.91 -0.02 4.30 16 25 H 0.06 1.97 7.80 -2.38 -0.02 1.95 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.35 8.24 8.91 -89.69 -0.80 7.44 16 32 H 0.09 4.48 4.71 -2.91 -0.01 4.46 16 Total: -1.00 -63.14 261.11 1.75 -61.39 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.25 Total: 20.10 kcal Atomic # 6 Polarization: -60.35 SS G_CDS: 2.54 Total: -57.81 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -2.72 Total: -70.44 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.68 Total: 46.76 kcal Total: -63.14 1.75 -61.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072201558.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.729 kcal (2) G-P(sol) polarization free energy of solvation -63.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds