Wall clock time and date at job start Mon Mar 30 2020 02:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 120.00058 * 2 1 4 4 H 1.48501 * 109.47149 * 240.00105 * 3 2 1 5 5 H 1.48507 * 109.46935 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47136 * 119.99789 * 3 2 1 7 7 C 1.39942 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99867 * 162.28460 * 7 2 1 9 9 C 1.41394 * 120.00115 * 342.28953 * 7 2 1 10 10 C 1.40734 * 120.24455 * 335.22913 * 9 7 2 11 11 C 1.37593 * 119.74252 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25441 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.49874 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.87598 * 179.70576 * 13 12 11 15 15 H 1.09003 * 109.90815 * 158.89988 * 14 13 12 16 16 C 1.53995 * 109.91652 * 280.00033 * 14 13 12 17 17 C 1.54588 * 105.14322 * 120.57685 * 16 14 13 18 18 C 1.54943 * 102.91807 * 21.95768 * 17 16 14 19 19 N 1.47900 * 109.91811 * 37.58731 * 14 13 12 20 20 C 1.37646 * 120.24686 * 359.97438 * 13 12 11 21 21 H 0.96994 * 120.00140 * 0.02562 * 1 2 3 22 22 H 1.07992 * 120.12536 * 0.02562 * 10 9 7 23 23 H 1.08003 * 119.87447 * 179.97438 * 11 10 9 24 24 H 1.07996 * 119.75570 * 179.97438 * 12 11 10 25 25 H 1.09001 * 110.30952 * 239.49914 * 16 14 13 26 26 H 1.09003 * 110.30621 * 1.65462 * 16 14 13 27 27 H 1.08998 * 110.72564 * 140.30987 * 17 16 14 28 28 H 1.08992 * 110.72660 * 263.42514 * 17 16 14 29 29 H 1.08998 * 110.66840 * 81.02283 * 18 17 16 30 30 H 1.09007 * 110.66725 * 203.98098 * 18 17 16 31 31 H 1.00893 * 111.00203 * 335.83401 * 19 14 13 32 32 H 1.08001 * 120.12412 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0496 -1.2343 -0.2841 9 6 1.3512 -2.4073 0.3736 10 6 0.2228 -2.3637 1.2135 11 6 -0.4080 -3.5333 1.5704 12 6 0.0643 -4.7515 1.1064 13 6 1.1755 -4.8065 0.2795 14 6 1.6808 -6.1386 -0.2113 15 1 2.2862 -5.9989 -1.1070 16 6 2.5186 -6.8190 0.8871 17 6 1.8012 -8.1586 1.1708 18 6 0.9892 -8.3982 -0.1269 19 7 0.5402 -7.0336 -0.5037 20 6 1.8224 -3.6492 -0.0905 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1465 -1.4160 1.5764 23 1 -1.2739 -3.5024 2.2152 24 1 -0.4367 -5.6646 1.3919 25 1 3.5328 -7.0008 0.5314 26 1 2.5371 -6.2019 1.7855 27 1 2.5251 -8.9585 1.3261 28 1 1.1392 -8.0668 2.0318 29 1 1.6237 -8.8230 -0.9048 30 1 0.1352 -9.0470 0.0679 31 1 -0.2762 -6.7630 0.0237 32 1 2.6882 -3.6943 -0.7345 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072201559.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:59 Heat of formation + Delta-G solvation = -6.055559 kcal Electronic energy + Delta-G solvation = -14114.531057 eV Core-core repulsion = 11845.089749 eV Total energy + Delta-G solvation = -2269.441308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42713 -38.43971 -35.50539 -32.24524 -31.79723 -30.78251 -28.30602 -27.15392 -23.49451 -22.71224 -21.89947 -21.02651 -18.96598 -17.55296 -16.85749 -16.34009 -16.18683 -15.54781 -15.17934 -14.58687 -14.38912 -13.98824 -13.64466 -13.27007 -13.15824 -12.84387 -12.67518 -12.40027 -12.20416 -12.14576 -11.95258 -11.61846 -11.32988 -11.17093 -11.01845 -9.64537 -9.40012 -9.05765 -8.64552 -6.36419 0.97616 1.06606 1.36985 1.48517 1.53667 2.20181 2.70880 3.39120 3.74980 3.85651 3.89568 4.13884 4.32584 4.41035 4.59601 4.62707 4.66398 4.90636 4.99833 5.01310 5.03440 5.11214 5.13895 5.29003 5.35552 5.51415 5.66642 5.89479 6.01534 6.09316 6.19312 6.35018 6.49750 6.68990 6.93316 7.02813 8.32889 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.059338 B = 0.006805 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.761269 B = 4113.524118 C = 4334.080498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.081 3.919 10 C -0.194 4.194 11 C -0.106 4.106 12 C -0.232 4.232 13 C -0.058 4.058 14 C 0.120 3.880 15 H 0.072 0.928 16 C -0.139 4.139 17 C -0.147 4.147 18 C 0.040 3.960 19 N -0.684 5.684 20 C -0.236 4.236 21 H 0.288 0.712 22 H 0.099 0.901 23 H 0.111 0.889 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.340 0.660 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 -9.554 2.234 10.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.534 4.534 8 H 0.092 0.908 9 C 0.079 3.921 10 C -0.213 4.213 11 C -0.125 4.125 12 C -0.251 4.251 13 C -0.059 4.059 14 C 0.010 3.990 15 H 0.090 0.910 16 C -0.178 4.178 17 C -0.186 4.186 18 C -0.089 4.089 19 N -0.314 5.314 20 C -0.256 4.256 21 H 0.099 0.901 22 H 0.117 0.883 23 H 0.129 0.871 24 H 0.132 0.868 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.159 0.841 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.999 -9.469 1.469 9.789 hybrid contribution 0.214 1.161 0.878 1.471 sum 2.213 -8.308 2.347 8.912 Atomic orbital electron populations 1.69879 1.09056 1.30614 1.35743 1.26774 0.95495 1.04558 0.91143 0.85245 0.78787 0.75558 0.80058 1.18374 1.19059 1.18459 1.19805 0.98292 0.92627 1.42647 0.90793 1.17954 0.91936 0.92998 0.89224 1.21283 1.00465 0.97129 1.02449 1.20946 0.98898 0.93021 0.99612 1.20352 1.01033 0.96492 1.07255 1.19698 0.95466 0.93955 0.96787 1.21156 0.91954 0.89247 0.96660 0.90980 1.22797 0.99818 0.96820 0.98362 1.23070 1.00059 0.96630 0.98855 1.23232 0.99605 0.90554 0.95480 1.62890 1.06002 1.02812 1.59714 1.20971 1.04388 0.92728 1.07489 0.90127 0.88257 0.87098 0.86783 0.90431 0.92685 0.88921 0.91569 0.89786 0.89070 0.84059 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.52 10.97 21.83 0.24 -44.28 16 2 C 0.03 1.81 5.14 85.26 0.44 2.25 16 3 Si 0.98 39.05 29.59 68.60 2.03 41.08 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.50 -28.14 9.05 23.46 0.21 -27.92 16 8 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.08 4.54 5.57 -21.29 -0.12 4.42 16 10 C -0.19 -10.51 8.70 22.73 0.20 -10.32 16 11 C -0.11 -5.02 10.02 22.22 0.22 -4.80 16 12 C -0.23 -9.99 8.99 22.46 0.20 -9.79 16 13 C -0.06 -2.58 4.74 -19.92 -0.09 -2.67 16 14 C 0.12 4.25 3.61 44.31 0.16 4.41 16 15 H 0.07 2.67 8.03 -2.39 -0.02 2.65 16 16 C -0.14 -4.07 6.56 31.47 0.21 -3.86 16 17 C -0.15 -3.32 7.06 31.80 0.22 -3.10 16 18 C 0.04 0.93 7.55 86.65 0.65 1.59 16 19 N -0.68 -21.61 7.39 -484.02 -3.58 -25.19 16 20 C -0.24 -12.00 9.42 22.73 0.21 -11.78 16 21 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 22 H 0.10 5.63 6.18 -2.91 -0.02 5.61 16 23 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 24 H 0.11 4.16 6.54 -2.91 -0.02 4.15 16 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.05 1.81 7.68 -2.39 -0.02 1.79 16 27 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.34 10.88 6.17 -89.70 -0.55 10.33 16 32 H 0.09 4.50 8.05 -2.91 -0.02 4.48 16 Total: -1.00 -60.26 263.30 1.77 -58.50 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.56 Total: 31.47 kcal Atomic # 6 Polarization: -64.10 SS G_CDS: 2.52 Total: -61.58 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -3.34 Total: -69.47 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -60.26 1.77 -58.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072201559.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.440 kcal (2) G-P(sol) polarization free energy of solvation -60.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds