Wall clock time and date at job start Mon Mar 30 2020 02:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38343 * 119.96356 * 2 1 4 4 C 1.38258 * 119.88048 * 180.02562 * 3 2 1 5 5 C 1.37954 * 120.27059 * 359.85126 * 4 3 2 6 6 C 1.50698 * 119.90147 * 180.02562 * 5 4 3 7 7 C 1.39359 * 120.19275 * 0.02562 * 5 4 3 8 8 C 1.37880 * 119.95478 * 179.97438 * 2 1 3 9 9 C 1.51566 * 131.57265 * 0.29402 * 8 2 1 10 10 C 1.54599 * 102.81940 * 163.76600 * 9 8 2 11 11 H 1.08996 * 110.77679 * 267.32166 * 10 9 8 12 12 C 1.50695 * 110.94173 * 143.96446 * 10 9 8 13 13 H 1.08003 * 119.99949 * 5.23951 * 12 10 9 14 14 C 1.37875 * 120.00366 * 185.23399 * 12 10 9 15 15 N 1.31514 * 119.99752 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00188 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47064 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47209 * 120.00336 * 16 14 12 19 19 H 1.48500 * 109.47051 * 239.99944 * 16 14 12 20 20 N 1.40040 * 129.94729 * 180.28440 * 7 5 4 21 21 H 1.09009 * 109.46917 * 270.01842 * 1 2 3 22 22 H 1.08996 * 109.47337 * 30.01562 * 1 2 3 23 23 H 1.08999 * 109.47858 * 150.02201 * 1 2 3 24 24 H 1.07998 * 120.05419 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.86452 * 179.87427 * 4 3 2 26 26 H 1.09007 * 109.46802 * 89.99859 * 6 5 4 27 27 H 1.08996 * 109.47371 * 209.99819 * 6 5 4 28 28 H 1.08995 * 109.47417 * 330.00346 * 6 5 4 29 29 H 1.08998 * 110.74515 * 45.43269 * 9 8 2 30 30 H 1.09000 * 110.90245 * 282.16949 * 9 8 2 31 31 H 0.97001 * 120.00062 * 180.02562 * 15 14 12 32 32 H 1.00908 * 110.99845 * 76.23201 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1985 0.0000 4 6 3.5805 1.1965 -0.0005 5 6 4.2742 0.0041 0.0020 6 6 5.7812 0.0116 0.0020 7 6 3.5854 -1.2074 0.0046 8 6 2.1954 -1.1946 0.0005 9 6 1.7152 -2.6322 -0.0046 10 6 2.9812 -3.4152 -0.4221 11 1 3.0078 -3.5597 -1.5021 12 6 3.0563 -4.7389 0.2942 13 1 2.2407 -5.0581 0.9261 14 6 4.1663 -5.5427 0.1428 15 7 5.1597 -5.1539 -0.6264 16 14 4.2591 -7.1839 1.0301 17 1 3.0221 -7.3868 1.8263 18 1 4.3916 -8.2780 0.0348 19 1 5.4372 -7.1919 1.9341 20 7 4.0743 -2.5197 0.0128 21 1 -0.3633 0.0003 1.0278 22 1 -0.3634 0.8898 -0.5140 23 1 -0.3635 -0.8901 -0.5135 24 1 1.6582 2.1340 -0.0004 25 1 4.1197 2.1324 -0.0026 26 1 6.1445 0.0156 1.0297 27 1 6.1490 -0.8776 -0.5099 28 1 6.1401 0.9022 -0.5137 29 1 0.9177 -2.7702 -0.7347 30 1 1.3840 -2.9351 0.9886 31 1 5.9404 -5.7196 -0.7333 32 1 4.4067 -2.7760 0.9304 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075577372.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:41 Heat of formation + Delta-G solvation = -0.075291 kcal Electronic energy + Delta-G solvation = -14348.781005 eV Core-core repulsion = 12079.599021 eV Total energy + Delta-G solvation = -2269.181984 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.27053 -37.54543 -34.84644 -34.43051 -30.39627 -30.11608 -29.72747 -26.70541 -25.43232 -22.57296 -22.11674 -20.65959 -18.73394 -17.07241 -16.83792 -16.39055 -15.73255 -15.43706 -14.68607 -14.51417 -14.07381 -13.96253 -13.77869 -13.50753 -13.37520 -13.04641 -12.76900 -12.71500 -12.46591 -12.34466 -11.99823 -11.73786 -11.55667 -11.19107 -10.69827 -10.16132 -9.20763 -8.37601 -8.14900 -6.37534 0.56114 0.63029 1.40330 1.42556 1.54031 2.39136 2.88812 3.04949 3.56908 3.96195 4.08911 4.18371 4.35229 4.44698 4.56892 4.65216 4.72513 4.84848 4.85629 4.89348 4.93164 5.00900 5.19703 5.25548 5.40825 5.58763 5.65650 5.70386 5.79014 5.87457 5.98340 6.18859 6.52694 6.78166 7.01492 7.36337 8.90419 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.036913 B = 0.008942 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.361926 B = 3130.452241 C = 3752.781064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.073 4.073 3 C -0.149 4.149 4 C -0.101 4.101 5 C -0.126 4.126 6 C -0.097 4.097 7 C 0.080 3.920 8 C -0.173 4.173 9 C -0.089 4.089 10 C 0.214 3.786 11 H 0.009 0.991 12 C -0.561 4.561 13 H 0.063 0.937 14 C 0.030 3.970 15 N -0.888 5.888 16 Si 0.961 3.039 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.279 1.279 20 N -0.618 5.618 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.055 0.945 24 H 0.152 0.848 25 H 0.151 0.849 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.262 0.738 32 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 11.277 2.678 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.074 4.074 3 C -0.168 4.168 4 C -0.119 4.119 5 C -0.128 4.128 6 C -0.154 4.154 7 C -0.020 4.020 8 C -0.176 4.176 9 C -0.128 4.128 10 C 0.108 3.892 11 H 0.027 0.973 12 C -0.599 4.599 13 H 0.081 0.919 14 C -0.174 4.174 15 N -0.524 5.524 16 Si 0.786 3.214 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.204 1.204 20 N -0.245 5.245 21 H 0.094 0.906 22 H 0.105 0.895 23 H 0.074 0.926 24 H 0.170 0.830 25 H 0.169 0.831 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.075 11.160 1.993 12.047 hybrid contribution -0.138 -1.345 0.800 1.571 sum -4.214 9.816 2.793 11.041 Atomic orbital electron populations 1.20755 0.89759 1.03046 1.02727 1.19585 0.97150 0.91314 0.99355 1.21141 0.94107 0.97373 1.04136 1.21056 0.94474 0.96830 0.99536 1.19665 0.96854 0.90967 1.05354 1.20567 0.90621 1.02297 1.01928 1.20263 0.92829 0.91654 0.97258 1.21238 0.94936 0.95484 1.05929 1.21623 0.99443 0.90787 1.00934 1.19828 0.84256 0.90524 0.94596 0.97341 1.21429 1.04501 1.03290 1.30676 0.91926 1.25856 0.95155 1.01177 0.95244 1.70237 1.07095 1.37967 1.37093 0.85482 0.78213 0.79335 0.78405 1.19015 1.20578 1.20438 1.58579 1.37131 0.98859 1.29956 0.90560 0.89548 0.92553 0.83008 0.83095 0.91457 0.93734 0.89865 0.91261 0.91475 0.92895 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.70 9.90 71.24 0.70 -2.00 16 2 C -0.07 -2.43 5.87 -19.92 -0.12 -2.55 16 3 C -0.15 -4.23 9.71 22.30 0.22 -4.02 16 4 C -0.10 -2.99 9.67 22.21 0.21 -2.78 16 5 C -0.13 -4.65 5.90 -19.66 -0.12 -4.77 16 6 C -0.10 -3.20 9.97 71.24 0.71 -2.49 16 7 C 0.08 3.53 6.48 38.28 0.25 3.78 16 8 C -0.17 -7.14 6.05 -19.49 -0.12 -7.26 16 9 C -0.09 -3.97 6.09 30.67 0.19 -3.78 16 10 C 0.21 11.37 3.39 44.53 0.15 11.52 16 11 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 12 C -0.56 -30.91 8.41 25.60 0.22 -30.69 16 13 H 0.06 3.36 7.67 -2.91 -0.02 3.34 16 14 C 0.03 1.62 5.41 84.65 0.46 2.08 16 15 N -0.89 -51.79 12.89 21.45 0.28 -51.52 16 16 Si 0.96 42.95 29.54 68.60 2.03 44.97 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 N -0.62 -31.46 6.38 -316.39 -2.02 -33.48 16 21 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 22 H 0.09 1.72 8.08 -2.39 -0.02 1.70 16 23 H 0.06 1.51 7.47 -2.39 -0.02 1.49 16 24 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 25 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 26 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.04 1.72 7.97 -2.39 -0.02 1.70 16 28 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 29 H 0.07 2.86 7.81 -2.39 -0.02 2.85 16 30 H 0.07 2.94 7.82 -2.39 -0.02 2.92 16 31 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 32 H 0.34 17.76 8.37 -89.69 -0.75 17.01 16 Total: -1.00 -62.79 269.10 3.40 -59.39 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.36 Total: 23.57 kcal Atomic # 6 Polarization: -45.70 SS G_CDS: 2.75 Total: -42.95 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -1.74 Total: -84.99 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -62.79 3.40 -59.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075577372.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.317 kcal (2) G-P(sol) polarization free energy of solvation -62.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds