Wall clock time and date at job start Mon Mar 30 2020 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38261 * 120.08470 * 2 1 4 4 C 1.38018 * 119.86810 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.37939 * 0.02910 * 4 3 2 6 6 C 1.37838 * 119.72349 * 0.12089 * 5 4 3 7 7 C 1.38037 * 120.08825 * 180.02562 * 2 1 3 8 8 C 1.50715 * 121.65734 * 179.51774 * 6 5 4 9 9 C 1.52890 * 109.95957 * 16.95899 * 8 6 5 10 10 N 1.47157 * 108.51267 * 309.59664 * 9 8 6 11 11 C 1.46627 * 110.25669 * 71.24535 * 10 9 8 12 12 H 1.09000 * 109.24627 * 67.72608 * 11 10 9 13 13 C 1.50706 * 109.27041 * 187.21926 * 11 10 9 14 14 H 1.07999 * 120.00196 * 121.01254 * 13 11 10 15 15 C 1.37879 * 119.99394 * 301.01122 * 13 11 10 16 16 N 1.31514 * 119.99350 * 180.02562 * 15 13 11 17 17 Si 1.86789 * 120.00458 * 359.97438 * 15 13 11 18 18 H 1.48506 * 109.47200 * 90.00092 * 17 15 13 19 19 H 1.48505 * 109.47499 * 210.00153 * 17 15 13 20 20 H 1.48500 * 109.47262 * 330.00415 * 17 15 13 21 21 H 1.09002 * 109.47354 * 89.99643 * 1 2 3 22 22 H 1.09005 * 109.47049 * 209.99643 * 1 2 3 23 23 H 1.08996 * 109.47155 * 329.99148 * 1 2 3 24 24 H 1.07998 * 120.06955 * 359.97383 * 3 2 1 25 25 H 1.08003 * 119.81061 * 180.02562 * 4 3 2 26 26 H 1.08004 * 119.82431 * 359.96629 * 7 2 1 27 27 H 1.09008 * 109.38824 * 137.10833 * 8 6 5 28 28 H 1.09001 * 109.39196 * 256.80715 * 8 6 5 29 29 H 1.09004 * 109.63229 * 69.30073 * 9 8 6 30 30 H 1.09004 * 109.63364 * 189.68731 * 9 8 6 31 31 H 1.00901 * 110.99500 * 307.82202 * 10 9 8 32 32 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1963 0.0000 4 6 3.5802 1.1911 0.0005 5 6 4.2773 -0.0083 0.0005 6 6 3.5857 -1.2007 -0.0027 7 6 2.1990 -1.1944 -0.0005 8 6 4.2986 -2.5285 -0.0137 9 6 5.7586 -2.3405 0.3992 10 7 6.3369 -1.2555 -0.4096 11 6 5.7828 0.0372 0.0049 12 1 6.1327 0.2724 1.0100 13 6 6.2508 1.1073 -0.9477 14 1 5.5296 1.6929 -1.4985 15 6 7.5996 1.3385 -1.1158 16 7 8.0079 2.2726 -1.9466 17 14 8.8468 0.3262 -0.1625 18 1 9.2089 -0.8809 -0.9482 19 1 10.0638 1.1416 0.0813 20 1 8.2593 -0.0871 1.1372 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6626 2.1331 -0.0004 25 1 4.1207 2.1262 0.0010 26 1 1.6576 -2.1289 -0.0004 27 1 3.8096 -3.2076 0.6849 28 1 4.2580 -2.9528 -1.0169 29 1 5.8095 -2.0767 1.4556 30 1 6.3102 -3.2645 0.2256 31 1 6.1824 -1.4164 -1.3936 32 1 8.9569 2.4356 -2.0646 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075640095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:43 Heat of formation + Delta-G solvation = 13.697154 kcal Electronic energy + Delta-G solvation = -14499.648312 eV Core-core repulsion = 12231.063545 eV Total energy + Delta-G solvation = -2268.584766 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.56705 -36.33685 -33.14889 -31.88024 -31.28998 -28.90011 -26.73538 -25.27561 -22.63890 -21.84291 -20.93599 -19.00101 -16.89413 -15.66337 -15.06839 -14.78319 -14.22870 -14.03912 -13.48949 -13.16022 -13.02497 -12.67901 -12.57043 -12.29692 -11.95090 -11.59362 -11.15644 -11.01986 -10.71286 -10.62576 -10.28122 -10.09555 -9.74590 -9.21962 -8.56628 -8.14861 -7.73868 -7.47546 -6.04564 -4.15183 1.93657 1.99580 3.55738 3.59340 3.74302 4.31508 4.61576 5.03468 5.10671 5.25454 5.43111 5.48223 5.55218 5.61429 5.70978 5.76219 5.82343 5.94823 5.98897 6.03177 6.28629 6.35726 6.40650 6.66666 6.72138 6.89754 7.06146 7.13598 7.20736 7.58958 7.71828 8.08806 8.18540 8.61721 8.94820 9.57380 11.04163 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.037861 B = 0.010204 C = 0.008391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.365440 B = 2743.420980 C = 3335.996385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.110 4.110 3 C -0.132 4.132 4 C -0.093 4.093 5 C -0.071 4.071 6 C -0.094 4.094 7 C -0.127 4.127 8 C -0.110 4.110 9 C 0.049 3.951 10 N -0.679 5.679 11 C 0.211 3.789 12 H 0.055 0.945 13 C -0.523 4.523 14 H 0.077 0.923 15 C 0.081 3.919 16 N -0.897 5.897 17 Si 0.931 3.069 18 H -0.279 1.279 19 H -0.317 1.317 20 H -0.270 1.270 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.112 0.888 25 H 0.132 0.868 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.341 0.659 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.159 -7.195 4.592 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.110 4.110 3 C -0.150 4.150 4 C -0.111 4.111 5 C -0.072 4.072 6 C -0.094 4.094 7 C -0.146 4.146 8 C -0.149 4.149 9 C -0.081 4.081 10 N -0.309 5.309 11 C 0.103 3.897 12 H 0.073 0.927 13 C -0.561 4.561 14 H 0.095 0.905 15 C -0.124 4.124 16 N -0.533 5.533 17 Si 0.762 3.238 18 H -0.206 1.206 19 H -0.246 1.246 20 H -0.196 1.196 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.130 0.870 25 H 0.150 0.850 26 H 0.127 0.873 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.160 0.840 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.424 -7.055 4.899 12.751 hybrid contribution -0.326 -0.528 -0.067 0.624 sum -9.750 -7.583 4.832 13.263 Atomic orbital electron populations 1.20682 0.92075 1.01885 1.01586 1.19668 0.95258 0.93447 1.02615 1.20965 0.94583 0.96848 1.02593 1.21324 0.93131 0.99038 0.97641 1.20791 0.98953 0.91779 0.95709 1.19590 0.93227 0.94756 1.01854 1.20765 0.93492 0.96845 1.03454 1.21126 0.97980 0.94255 1.01545 1.22049 0.91269 0.95916 0.98893 1.61374 1.58783 1.02335 1.08424 1.18703 0.84547 0.88117 0.98304 0.92744 1.20966 0.93073 1.16535 1.25537 0.90457 1.25061 0.98871 0.94135 0.94315 1.69952 1.15708 1.31783 1.35888 0.85937 0.77986 0.78714 0.81124 1.20560 1.24645 1.19568 0.91907 0.92303 0.92102 0.86966 0.85025 0.87346 0.91548 0.91278 0.91622 0.91512 0.84034 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.02 36.01 0.36 -0.92 16 2 C -0.11 -1.77 5.88 -104.69 -0.62 -2.38 16 3 C -0.13 -2.30 9.71 -39.65 -0.38 -2.68 16 4 C -0.09 -1.89 8.73 -39.48 -0.34 -2.24 16 5 C -0.07 -1.49 5.47 -104.62 -0.57 -2.06 16 6 C -0.09 -1.74 5.77 -104.60 -0.60 -2.34 16 7 C -0.13 -2.11 9.31 -39.49 -0.37 -2.48 16 8 C -0.11 -1.75 5.82 -27.93 -0.16 -1.92 16 9 C 0.05 0.85 6.62 -3.74 -0.02 0.82 16 10 N -0.68 -14.62 4.07 -109.29 -0.44 -15.06 16 11 C 0.21 4.95 1.90 -70.20 -0.13 4.81 16 12 H 0.06 1.35 7.23 -51.93 -0.38 0.98 16 13 C -0.52 -14.32 8.43 -34.44 -0.29 -14.61 16 14 H 0.08 2.29 6.95 -52.49 -0.36 1.93 16 15 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 16 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 17 Si 0.93 23.47 25.96 -169.99 -4.41 19.05 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 19 H -0.32 -8.09 7.11 56.52 0.40 -7.69 16 20 H -0.27 -6.69 6.56 56.52 0.37 -6.32 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 23 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 24 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 25 H 0.13 2.80 7.08 -52.48 -0.37 2.43 16 26 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 27 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.34 7.37 8.55 -39.29 -0.34 7.03 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 258.88 15.07 3.90 3.90 Total: -1.00 -29.92 258.88 -7.83 -37.75 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.41 Total: 4.53 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -3.24 Total: -23.81 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.33 Total: -41.42 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -4.41 Total: 19.05 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.92 -7.83 -37.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075640095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.443 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds