Wall clock time and date at job start Mon Mar 30 2020 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38261 * 120.08470 * 2 1 4 4 C 1.38018 * 119.86810 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.37939 * 0.02910 * 4 3 2 6 6 C 1.37838 * 119.72349 * 0.12089 * 5 4 3 7 7 C 1.38037 * 120.08825 * 180.02562 * 2 1 3 8 8 C 1.50715 * 121.65734 * 179.51774 * 6 5 4 9 9 C 1.52890 * 109.95957 * 16.95899 * 8 6 5 10 10 N 1.47157 * 108.51267 * 309.59664 * 9 8 6 11 11 C 1.46627 * 110.25669 * 71.24535 * 10 9 8 12 12 H 1.09000 * 109.24627 * 67.72608 * 11 10 9 13 13 C 1.50706 * 109.27041 * 187.21926 * 11 10 9 14 14 H 1.07999 * 120.00196 * 121.01254 * 13 11 10 15 15 C 1.37879 * 119.99394 * 301.01122 * 13 11 10 16 16 N 1.31514 * 119.99350 * 180.02562 * 15 13 11 17 17 Si 1.86789 * 120.00458 * 359.97438 * 15 13 11 18 18 H 1.48506 * 109.47200 * 90.00092 * 17 15 13 19 19 H 1.48505 * 109.47499 * 210.00153 * 17 15 13 20 20 H 1.48500 * 109.47262 * 330.00415 * 17 15 13 21 21 H 1.09002 * 109.47354 * 89.99643 * 1 2 3 22 22 H 1.09005 * 109.47049 * 209.99643 * 1 2 3 23 23 H 1.08996 * 109.47155 * 329.99148 * 1 2 3 24 24 H 1.07998 * 120.06955 * 359.97383 * 3 2 1 25 25 H 1.08003 * 119.81061 * 180.02562 * 4 3 2 26 26 H 1.08004 * 119.82431 * 359.96629 * 7 2 1 27 27 H 1.09008 * 109.38824 * 137.10833 * 8 6 5 28 28 H 1.09001 * 109.39196 * 256.80715 * 8 6 5 29 29 H 1.09004 * 109.63229 * 69.30073 * 9 8 6 30 30 H 1.09004 * 109.63364 * 189.68731 * 9 8 6 31 31 H 1.00901 * 110.99500 * 307.82202 * 10 9 8 32 32 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1963 0.0000 4 6 3.5802 1.1911 0.0005 5 6 4.2773 -0.0083 0.0005 6 6 3.5857 -1.2007 -0.0027 7 6 2.1990 -1.1944 -0.0005 8 6 4.2986 -2.5285 -0.0137 9 6 5.7586 -2.3405 0.3992 10 7 6.3369 -1.2555 -0.4096 11 6 5.7828 0.0372 0.0049 12 1 6.1327 0.2724 1.0100 13 6 6.2508 1.1073 -0.9477 14 1 5.5296 1.6929 -1.4985 15 6 7.5996 1.3385 -1.1158 16 7 8.0079 2.2726 -1.9466 17 14 8.8468 0.3262 -0.1625 18 1 9.2089 -0.8809 -0.9482 19 1 10.0638 1.1416 0.0813 20 1 8.2593 -0.0871 1.1372 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 1.6626 2.1331 -0.0004 25 1 4.1207 2.1262 0.0010 26 1 1.6576 -2.1289 -0.0004 27 1 3.8096 -3.2076 0.6849 28 1 4.2580 -2.9528 -1.0169 29 1 5.8095 -2.0767 1.4556 30 1 6.3102 -3.2645 0.2256 31 1 6.1824 -1.4164 -1.3936 32 1 8.9569 2.4356 -2.0646 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075640095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:43 Heat of formation + Delta-G solvation = -5.182913 kcal Electronic energy + Delta-G solvation = -14500.467013 eV Core-core repulsion = 12231.063545 eV Total energy + Delta-G solvation = -2269.403468 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01862 -37.81812 -35.00956 -33.44950 -32.84021 -30.43644 -28.03206 -27.07211 -24.05799 -23.40305 -22.54357 -20.43294 -18.94092 -17.25121 -16.61865 -16.26112 -16.01222 -15.41493 -14.79975 -14.77067 -14.61678 -14.24831 -13.99336 -13.64371 -13.39636 -12.87821 -12.74191 -12.60928 -12.37939 -12.06134 -11.94763 -11.78831 -11.61021 -11.14362 -10.76055 -9.53957 -9.23769 -9.07338 -8.26325 -6.39276 0.53451 0.57867 1.49334 1.55308 1.70816 2.50593 2.88546 3.06106 3.72351 3.86110 4.06225 4.13487 4.23388 4.29412 4.40614 4.52626 4.63852 4.76145 4.87524 4.91176 4.97689 5.03554 5.09728 5.14251 5.26516 5.39026 5.47350 5.64872 5.75887 5.90854 6.11189 6.26247 6.39503 6.73724 6.77840 7.36127 8.86007 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.037861 B = 0.010204 C = 0.008391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.365440 B = 2743.420980 C = 3335.996385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.102 4.102 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.108 4.108 6 C -0.099 4.099 7 C -0.127 4.127 8 C -0.104 4.104 9 C 0.047 3.953 10 N -0.691 5.691 11 C 0.222 3.778 12 H 0.035 0.965 13 C -0.518 4.518 14 H 0.038 0.962 15 C 0.028 3.972 16 N -0.945 5.945 17 Si 0.995 3.005 18 H -0.272 1.272 19 H -0.322 1.322 20 H -0.264 1.264 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.132 0.868 25 H 0.101 0.899 26 H 0.145 0.855 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.339 0.661 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.210 -10.108 5.532 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.102 4.102 3 C -0.156 4.156 4 C -0.138 4.138 5 C -0.109 4.109 6 C -0.099 4.099 7 C -0.145 4.145 8 C -0.142 4.142 9 C -0.082 4.082 10 N -0.321 5.321 11 C 0.113 3.887 12 H 0.053 0.947 13 C -0.556 4.556 14 H 0.056 0.944 15 C -0.171 4.171 16 N -0.584 5.584 17 Si 0.825 3.175 18 H -0.197 1.197 19 H -0.252 1.252 20 H -0.189 1.189 21 H 0.094 0.906 22 H 0.099 0.901 23 H 0.091 0.909 24 H 0.150 0.850 25 H 0.119 0.881 26 H 0.162 0.838 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.157 0.843 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.496 -9.983 5.850 16.311 hybrid contribution 0.149 0.401 -0.364 0.562 sum -11.347 -9.582 5.486 15.833 Atomic orbital electron populations 1.20760 0.88687 1.03643 1.02892 1.20190 0.97668 0.92543 0.99846 1.21193 0.93314 0.98838 1.02272 1.21239 0.94767 0.97934 0.99831 1.20645 0.97634 0.93435 0.99226 1.19919 0.94452 0.94732 1.00807 1.21182 0.92754 0.98532 1.02023 1.21125 0.96560 0.93370 1.03129 1.22188 0.92820 0.95308 0.97883 1.61107 1.59528 1.02661 1.08791 1.18293 0.86616 0.88029 0.95742 0.94744 1.21173 0.92272 1.17161 1.25040 0.94352 1.25852 1.00840 0.95191 0.95255 1.70076 1.16081 1.34043 1.38236 0.84910 0.75344 0.77197 0.80046 1.19729 1.25171 1.18896 0.90635 0.90138 0.90895 0.85049 0.88080 0.83751 0.88162 0.90016 0.92014 0.88655 0.84303 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 10.02 71.24 0.71 -1.32 16 2 C -0.10 -2.98 5.88 -19.91 -0.12 -3.09 16 3 C -0.14 -4.72 9.71 22.22 0.22 -4.51 16 4 C -0.12 -5.05 8.73 22.33 0.19 -4.85 16 5 C -0.11 -4.61 5.47 -19.87 -0.11 -4.72 16 6 C -0.10 -3.43 5.77 -19.85 -0.11 -3.55 16 7 C -0.13 -3.73 9.31 22.33 0.21 -3.52 16 8 C -0.10 -2.89 5.82 29.82 0.17 -2.72 16 9 C 0.05 1.51 6.62 86.22 0.57 2.08 16 10 N -0.69 -29.16 4.07 -499.67 -2.03 -31.19 16 11 C 0.22 10.65 1.90 43.45 0.08 10.73 16 12 H 0.03 1.77 7.23 -2.39 -0.02 1.76 16 13 C -0.52 -29.87 8.43 25.60 0.22 -29.65 16 14 H 0.04 2.45 6.95 -2.91 -0.02 2.43 16 15 C 0.03 1.65 5.47 84.66 0.46 2.11 16 16 N -0.94 -59.75 13.96 21.45 0.30 -59.45 16 17 Si 1.00 49.60 25.96 68.60 1.78 51.38 16 18 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.32 -16.12 7.11 99.48 0.71 -15.41 16 20 H -0.26 -12.72 6.56 99.48 0.65 -12.07 16 21 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.08 1.28 8.09 -2.38 -0.02 1.26 16 23 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 24 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 25 H 0.10 4.73 7.08 -2.91 -0.02 4.71 16 26 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 27 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 2.02 8.05 -2.39 -0.02 2.01 16 30 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.34 14.45 8.55 -89.69 -0.77 13.69 16 32 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 Total: -1.00 -67.70 258.88 2.83 -64.86 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.29 Total: 17.40 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 2.50 Total: -43.01 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -1.73 Total: -90.64 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.78 Total: 51.38 kcal Total: -67.70 2.83 -64.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075640095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.679 kcal (2) G-P(sol) polarization free energy of solvation -67.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds