Wall clock time and date at job start Mon Mar 30 2020 02:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 120.06732 * 2 1 4 4 C 1.38033 * 119.82838 * 180.10025 * 3 2 1 5 5 C 1.38674 * 120.34840 * 0.02562 * 4 3 2 6 6 C 1.37835 * 119.85483 * 359.84278 * 5 4 3 7 7 C 1.38010 * 120.06357 * 180.02562 * 2 1 3 8 8 C 1.50619 * 121.85831 * 180.24641 * 6 5 4 9 9 H 1.09005 * 109.27071 * 102.82176 * 8 6 5 10 10 C 1.50701 * 109.27277 * 222.33371 * 8 6 5 11 11 H 1.07997 * 119.99769 * 27.81526 * 10 8 6 12 12 C 1.37874 * 119.99691 * 207.82100 * 10 8 6 13 13 N 1.31515 * 120.00511 * 353.32655 * 12 10 8 14 14 Si 1.86805 * 119.99925 * 173.33316 * 12 10 8 15 15 H 1.48504 * 109.46854 * 89.99600 * 14 12 10 16 16 H 1.48503 * 109.46845 * 330.00116 * 14 12 10 17 17 H 1.48494 * 109.47301 * 209.99341 * 14 12 10 18 18 N 1.46626 * 110.50019 * 342.59827 * 8 6 5 19 19 C 1.47161 * 110.26054 * 52.46196 * 18 8 6 20 20 C 1.50718 * 118.48556 * 179.76509 * 5 4 3 21 21 H 1.09003 * 109.47187 * 89.99349 * 1 2 3 22 22 H 1.08997 * 109.47414 * 209.99979 * 1 2 3 23 23 H 1.09001 * 109.46932 * 330.00320 * 1 2 3 24 24 H 1.08006 * 120.08753 * 0.07522 * 3 2 1 25 25 H 1.08003 * 119.82671 * 180.02562 * 4 3 2 26 26 H 1.08002 * 119.81133 * 359.95555 * 7 2 1 27 27 H 0.97000 * 119.99881 * 354.58663 * 13 12 10 28 28 H 1.00902 * 111.00424 * 175.88498 * 18 8 6 29 29 H 1.08998 * 109.64057 * 169.01751 * 19 18 8 30 30 H 1.08999 * 109.62826 * 48.41661 * 19 18 8 31 31 H 1.08999 * 109.38861 * 283.35898 * 20 5 4 32 32 H 1.09005 * 109.38653 * 43.06635 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1965 0.0000 4 6 3.5800 1.1908 -0.0021 5 6 4.2757 -0.0088 -0.0047 6 6 3.5858 -1.2021 -0.0020 7 6 2.1984 -1.1944 -0.0005 8 6 4.2953 -2.5307 0.0008 9 1 4.2636 -2.9534 1.0051 10 6 3.6019 -3.4669 -0.9550 11 1 3.0667 -3.0714 -1.8056 12 6 3.6507 -4.8285 -0.7435 13 7 4.4084 -5.3187 0.2132 14 14 2.6408 -5.9771 -1.8160 15 1 3.4423 -6.3826 -2.9986 16 1 1.4106 -5.2786 -2.2677 17 1 2.2668 -7.1831 -1.0345 18 7 5.6932 -2.3671 -0.4105 19 6 6.3447 -1.3265 0.4008 20 6 5.7822 0.0339 -0.0124 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6622 2.1334 0.0012 25 1 4.1211 2.1255 -0.0017 26 1 1.6563 -2.1286 -0.0002 27 1 4.9924 -4.7315 0.7183 28 1 6.1935 -3.2411 -0.3471 29 1 7.4205 -1.3461 0.2266 30 1 6.1385 -1.5027 1.4565 31 1 6.1321 0.2809 -1.0147 32 1 6.1262 0.7955 0.6875 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083661841.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:35 Heat of formation + Delta-G solvation = 7.782484 kcal Electronic energy + Delta-G solvation = -14504.659352 eV Core-core repulsion = 12235.818106 eV Total energy + Delta-G solvation = -2268.841246 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.34547 -36.13887 -33.54082 -31.74110 -30.78917 -29.03097 -26.30629 -24.90800 -22.82689 -21.70942 -21.08013 -18.49190 -17.09013 -15.55680 -15.11908 -14.77740 -13.82241 -13.78385 -13.64462 -13.51952 -13.19280 -12.60160 -12.21790 -11.97725 -11.81389 -11.37640 -11.22332 -10.85523 -10.80634 -10.59219 -10.25261 -10.11415 -9.69654 -8.86459 -8.51259 -8.05519 -7.72013 -7.23313 -6.45069 -4.19404 2.01727 2.13362 3.41660 3.43312 3.60084 4.38116 4.50325 5.04564 5.31652 5.34306 5.44558 5.58500 5.62309 5.67791 5.88410 5.94190 6.04681 6.07188 6.13322 6.26199 6.37367 6.41785 6.51973 6.77507 6.78711 6.91394 7.11520 7.25029 7.39350 7.68607 7.98186 8.29546 8.39564 8.55765 8.75810 9.51611 10.89542 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.025090 B = 0.011865 C = 0.008478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.706385 B = 2359.378769 C = 3301.971931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.106 4.106 3 C -0.140 4.140 4 C -0.129 4.129 5 C -0.093 4.093 6 C -0.030 4.030 7 C -0.097 4.097 8 C 0.224 3.776 9 H 0.016 0.984 10 C -0.568 4.568 11 H 0.056 0.944 12 C 0.022 3.978 13 N -0.908 5.908 14 Si 1.071 2.929 15 H -0.287 1.287 16 H -0.287 1.287 17 H -0.284 1.284 18 N -0.679 5.679 19 C 0.045 3.955 20 C -0.067 4.067 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.128 0.872 27 H 0.265 0.735 28 H 0.338 0.662 29 H 0.061 0.939 30 H 0.019 0.981 31 H 0.072 0.928 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 9.446 0.668 9.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.106 4.106 3 C -0.158 4.158 4 C -0.147 4.147 5 C -0.093 4.093 6 C -0.031 4.031 7 C -0.115 4.115 8 C 0.118 3.882 9 H 0.033 0.967 10 C -0.607 4.607 11 H 0.074 0.926 12 C -0.182 4.182 13 N -0.545 5.545 14 Si 0.899 3.101 15 H -0.213 1.213 16 H -0.213 1.213 17 H -0.209 1.209 18 N -0.312 5.312 19 C -0.085 4.085 20 C -0.105 4.105 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.146 0.854 27 H 0.076 0.924 28 H 0.156 0.844 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.091 0.909 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.874 8.283 -0.057 8.768 hybrid contribution 0.675 1.267 0.981 1.738 sum -2.199 9.550 0.924 9.843 Atomic orbital electron populations 1.20696 0.92001 1.01923 1.01700 1.19811 0.95509 0.93439 1.01850 1.20707 0.94018 0.96831 1.04288 1.20894 0.94126 0.96883 1.02808 1.19642 0.95419 0.92659 1.01621 1.20101 0.93696 0.94879 0.94401 1.21134 0.94004 0.97313 0.99044 1.18272 0.85036 0.89228 0.95707 0.96680 1.21866 1.34243 0.92208 1.12382 0.92554 1.25953 0.97484 0.97093 0.97699 1.70838 1.23904 1.38892 1.20822 0.83505 0.75715 0.75484 0.75372 1.21346 1.21270 1.20944 1.61389 1.04261 1.10286 1.55237 1.21950 0.97681 0.93714 0.95128 1.20426 0.91726 0.97095 1.01226 0.91802 0.91811 0.92406 0.87284 0.87293 0.85368 0.92388 0.84364 0.92077 0.96247 0.90912 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.02 36.01 0.36 -1.17 16 2 C -0.11 -1.94 5.87 -104.70 -0.62 -2.55 16 3 C -0.14 -2.40 9.71 -39.65 -0.38 -2.78 16 4 C -0.13 -2.29 9.66 -39.50 -0.38 -2.67 16 5 C -0.09 -1.90 5.77 -104.60 -0.60 -2.50 16 6 C -0.03 -0.69 5.46 -104.62 -0.57 -1.27 16 7 C -0.10 -2.09 8.66 -39.48 -0.34 -2.43 16 8 C 0.22 5.68 2.07 -70.20 -0.15 5.54 16 9 H 0.02 0.44 7.03 -51.93 -0.37 0.07 16 10 C -0.57 -15.59 7.35 -34.44 -0.25 -15.84 16 11 H 0.06 1.59 7.71 -52.49 -0.40 1.19 16 12 C 0.02 0.62 5.45 -17.82 -0.10 0.52 16 13 N -0.91 -26.28 13.55 55.43 0.75 -25.53 16 14 Si 1.07 24.66 29.91 -169.99 -5.08 19.58 16 15 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 N -0.68 -15.87 6.46 -109.29 -0.71 -16.57 16 19 C 0.05 0.88 6.58 -3.73 -0.02 0.85 16 20 C -0.07 -1.21 5.95 -27.93 -0.17 -1.38 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 23 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 24 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 25 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 26 H 0.13 2.88 7.34 -52.49 -0.39 2.49 16 27 H 0.27 7.60 6.28 -40.82 -0.26 7.34 16 28 H 0.34 8.08 8.21 -39.29 -0.32 7.75 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.02 0.38 8.05 -51.93 -0.42 -0.03 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 263.25 15.07 3.97 3.97 Total: -1.00 -29.38 263.25 -8.62 -38.00 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.32 Total: 6.24 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -3.22 Total: -25.69 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 0.05 Total: -42.10 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.08 Total: 19.58 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.38 -8.62 -38.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083661841.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.786 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds