Wall clock time and date at job start Mon Mar 30 2020 02:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 120.06732 * 2 1 4 4 C 1.38033 * 119.82838 * 180.10025 * 3 2 1 5 5 C 1.38674 * 120.34840 * 0.02562 * 4 3 2 6 6 C 1.37835 * 119.85483 * 359.84278 * 5 4 3 7 7 C 1.38010 * 120.06357 * 180.02562 * 2 1 3 8 8 C 1.50619 * 121.85831 * 180.24641 * 6 5 4 9 9 H 1.09005 * 109.27071 * 102.82176 * 8 6 5 10 10 C 1.50701 * 109.27277 * 222.33371 * 8 6 5 11 11 H 1.07997 * 119.99769 * 27.81526 * 10 8 6 12 12 C 1.37874 * 119.99691 * 207.82100 * 10 8 6 13 13 N 1.31515 * 120.00511 * 353.32655 * 12 10 8 14 14 Si 1.86805 * 119.99925 * 173.33316 * 12 10 8 15 15 H 1.48504 * 109.46854 * 89.99600 * 14 12 10 16 16 H 1.48503 * 109.46845 * 330.00116 * 14 12 10 17 17 H 1.48494 * 109.47301 * 209.99341 * 14 12 10 18 18 N 1.46626 * 110.50019 * 342.59827 * 8 6 5 19 19 C 1.47161 * 110.26054 * 52.46196 * 18 8 6 20 20 C 1.50718 * 118.48556 * 179.76509 * 5 4 3 21 21 H 1.09003 * 109.47187 * 89.99349 * 1 2 3 22 22 H 1.08997 * 109.47414 * 209.99979 * 1 2 3 23 23 H 1.09001 * 109.46932 * 330.00320 * 1 2 3 24 24 H 1.08006 * 120.08753 * 0.07522 * 3 2 1 25 25 H 1.08003 * 119.82671 * 180.02562 * 4 3 2 26 26 H 1.08002 * 119.81133 * 359.95555 * 7 2 1 27 27 H 0.97000 * 119.99881 * 354.58663 * 13 12 10 28 28 H 1.00902 * 111.00424 * 175.88498 * 18 8 6 29 29 H 1.08998 * 109.64057 * 169.01751 * 19 18 8 30 30 H 1.08999 * 109.62826 * 48.41661 * 19 18 8 31 31 H 1.08999 * 109.38861 * 283.35898 * 20 5 4 32 32 H 1.09005 * 109.38653 * 43.06635 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1965 0.0000 4 6 3.5800 1.1908 -0.0021 5 6 4.2757 -0.0088 -0.0047 6 6 3.5858 -1.2021 -0.0020 7 6 2.1984 -1.1944 -0.0005 8 6 4.2953 -2.5307 0.0008 9 1 4.2636 -2.9534 1.0051 10 6 3.6019 -3.4669 -0.9550 11 1 3.0667 -3.0714 -1.8056 12 6 3.6507 -4.8285 -0.7435 13 7 4.4084 -5.3187 0.2132 14 14 2.6408 -5.9771 -1.8160 15 1 3.4423 -6.3826 -2.9986 16 1 1.4106 -5.2786 -2.2677 17 1 2.2668 -7.1831 -1.0345 18 7 5.6932 -2.3671 -0.4105 19 6 6.3447 -1.3265 0.4008 20 6 5.7822 0.0339 -0.0124 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6622 2.1334 0.0012 25 1 4.1211 2.1255 -0.0017 26 1 1.6563 -2.1286 -0.0002 27 1 4.9924 -4.7315 0.7183 28 1 6.1935 -3.2411 -0.3471 29 1 7.4205 -1.3461 0.2266 30 1 6.1385 -1.5027 1.4565 31 1 6.1321 0.2809 -1.0147 32 1 6.1262 0.7955 0.6875 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083661841.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:34 Heat of formation + Delta-G solvation = -10.570490 kcal Electronic energy + Delta-G solvation = -14505.455196 eV Core-core repulsion = 12235.818106 eV Total energy + Delta-G solvation = -2269.637090 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89775 -37.78065 -35.37914 -33.36162 -32.43692 -30.54388 -27.91963 -26.69271 -24.56924 -23.25604 -22.68750 -20.07568 -19.07629 -17.26221 -16.61727 -16.37528 -15.68749 -15.52232 -15.25367 -15.10836 -14.51461 -14.15994 -13.78058 -13.53454 -13.13765 -12.90689 -12.82309 -12.64329 -12.51059 -12.10587 -11.95447 -11.77989 -11.28873 -10.85803 -10.57587 -9.64051 -9.21678 -9.10783 -8.63777 -6.40135 0.53775 0.61585 1.51405 1.58819 1.77848 2.52493 2.92146 3.04039 3.65842 3.89315 4.01382 4.16656 4.22424 4.26571 4.48105 4.59421 4.64282 4.69818 4.74392 4.84326 4.87492 4.96077 5.04392 5.12738 5.30425 5.36092 5.61385 5.72908 5.76650 6.01815 6.13213 6.26123 6.42899 6.61412 6.65819 7.38136 8.69136 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.025090 B = 0.011865 C = 0.008478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.706385 B = 2359.378769 C = 3301.971931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.106 4.106 3 C -0.132 4.132 4 C -0.123 4.123 5 C -0.111 4.111 6 C -0.072 4.072 7 C -0.125 4.125 8 C 0.229 3.771 9 H -0.027 1.027 10 C -0.575 4.575 11 H 0.040 0.960 12 C -0.024 4.024 13 N -0.931 5.931 14 Si 1.116 2.884 15 H -0.275 1.275 16 H -0.273 1.273 17 H -0.281 1.281 18 N -0.686 5.686 19 C 0.043 3.957 20 C -0.064 4.064 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.088 0.912 24 H 0.152 0.848 25 H 0.149 0.851 26 H 0.101 0.899 27 H 0.254 0.746 28 H 0.327 0.673 29 H 0.089 0.911 30 H 0.010 0.990 31 H 0.079 0.921 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 12.226 0.097 12.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.149 4.149 4 C -0.141 4.141 5 C -0.111 4.111 6 C -0.072 4.072 7 C -0.144 4.144 8 C 0.122 3.878 9 H -0.010 1.010 10 C -0.614 4.614 11 H 0.059 0.941 12 C -0.223 4.223 13 N -0.569 5.569 14 Si 0.938 3.062 15 H -0.200 1.200 16 H -0.198 1.198 17 H -0.206 1.206 18 N -0.317 5.317 19 C -0.087 4.087 20 C -0.101 4.101 21 H 0.093 0.907 22 H 0.078 0.922 23 H 0.107 0.893 24 H 0.170 0.830 25 H 0.166 0.834 26 H 0.119 0.881 27 H 0.064 0.936 28 H 0.144 0.856 29 H 0.108 0.892 30 H 0.028 0.972 31 H 0.097 0.903 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.476 11.093 -0.627 11.641 hybrid contribution 0.858 0.527 1.194 1.562 sum -2.618 11.620 0.567 11.924 Atomic orbital electron populations 1.20763 0.89269 1.03293 1.02815 1.20212 0.97591 0.92617 1.00210 1.21226 0.94126 0.97814 1.01765 1.21330 0.94743 0.97194 1.00795 1.19966 0.96834 0.92617 1.01674 1.20066 0.94456 0.94783 0.97940 1.21086 0.93851 0.97958 1.01514 1.18046 0.86337 0.90606 0.92811 1.00958 1.22026 1.34229 0.93015 1.12082 0.94144 1.27277 0.97885 0.98940 0.98169 1.70936 1.25114 1.38737 1.22123 0.82947 0.75106 0.73919 0.74276 1.20023 1.19778 1.20639 1.61287 1.03606 1.10653 1.56187 1.22120 0.99127 0.93429 0.93997 1.20491 0.90320 0.96728 1.02540 0.90673 0.92223 0.89320 0.83009 0.83366 0.88119 0.93559 0.85580 0.89234 0.97216 0.90258 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.75 10.02 71.24 0.71 -2.04 16 2 C -0.11 -3.69 5.87 -19.91 -0.12 -3.81 16 3 C -0.13 -3.95 9.71 22.23 0.22 -3.74 16 4 C -0.12 -3.88 9.66 22.33 0.22 -3.67 16 5 C -0.11 -4.35 5.77 -19.85 -0.11 -4.46 16 6 C -0.07 -3.40 5.46 -19.87 -0.11 -3.51 16 7 C -0.13 -5.58 8.66 22.34 0.19 -5.39 16 8 C 0.23 12.27 2.07 43.45 0.09 12.36 16 9 H -0.03 -1.60 7.03 -2.38 -0.02 -1.62 16 10 C -0.57 -33.15 7.35 25.60 0.19 -32.96 16 11 H 0.04 2.40 7.71 -2.91 -0.02 2.37 16 12 C -0.02 -1.38 5.45 84.65 0.46 -0.92 16 13 N -0.93 -56.40 13.55 21.45 0.29 -56.11 16 14 Si 1.12 50.86 29.91 68.60 2.05 52.91 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 N -0.69 -33.17 6.46 -499.67 -3.23 -36.39 16 19 C 0.04 1.64 6.58 86.22 0.57 2.21 16 20 C -0.06 -2.15 5.95 29.82 0.18 -1.97 16 21 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.06 1.60 8.09 -2.39 -0.02 1.58 16 23 H 0.09 1.79 8.09 -2.39 -0.02 1.77 16 24 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 25 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 26 H 0.10 4.86 7.34 -2.91 -0.02 4.84 16 27 H 0.25 15.51 6.28 -92.71 -0.58 14.93 16 28 H 0.33 16.45 8.21 -89.69 -0.74 15.72 16 29 H 0.09 2.88 8.14 -2.39 -0.02 2.87 16 30 H 0.01 0.39 8.05 -2.39 -0.02 0.37 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 Total: -1.00 -67.15 263.25 2.16 -65.00 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.56 Total: 22.48 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 2.48 Total: -47.89 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -2.94 Total: -92.50 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.05 Total: 52.91 kcal Total: -67.15 2.16 -65.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083661841.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.425 kcal (2) G-P(sol) polarization free energy of solvation -67.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds