Wall clock time and date at job start Mon Mar 30 2020 02:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38308 * 120.04314 * 2 1 4 4 C 1.38129 * 120.16141 * 180.08195 * 3 2 1 5 5 C 1.38505 * 120.30299 * 0.02562 * 4 3 2 6 6 C 1.38610 * 119.56813 * 359.80685 * 5 4 3 7 7 C 1.38018 * 120.04212 * 179.97438 * 2 1 3 8 8 N 1.39911 * 120.84020 * 180.30048 * 6 5 4 9 9 C 1.46926 * 118.92139 * 346.43836 * 8 6 5 10 10 C 1.53428 * 107.79944 * 44.67595 * 9 8 6 11 11 C 1.50590 * 118.93017 * 179.56848 * 5 4 3 12 12 H 1.09000 * 109.30500 * 279.85855 * 11 5 4 13 13 C 1.50698 * 109.30076 * 39.23463 * 11 5 4 14 14 H 1.07998 * 120.00125 * 35.44665 * 13 11 5 15 15 C 1.37881 * 119.99978 * 215.44963 * 13 11 5 16 16 N 1.31519 * 119.99935 * 184.59419 * 15 13 11 17 17 Si 1.86796 * 120.00025 * 4.59444 * 15 13 11 18 18 H 1.48501 * 109.47157 * 84.81319 * 17 15 13 19 19 H 1.48499 * 109.47030 * 204.81062 * 17 15 13 20 20 H 1.48497 * 109.47326 * 324.81487 * 17 15 13 21 21 H 1.09000 * 109.46690 * 270.02349 * 1 2 3 22 22 H 1.09001 * 109.46732 * 30.02184 * 1 2 3 23 23 H 1.08998 * 109.46941 * 150.02249 * 1 2 3 24 24 H 1.07997 * 119.92392 * 0.05189 * 3 2 1 25 25 H 1.07995 * 119.84760 * 179.97438 * 4 3 2 26 26 H 1.08001 * 119.99171 * 359.97438 * 7 2 1 27 27 H 0.97003 * 120.53738 * 166.16588 * 8 6 5 28 28 H 1.08998 * 109.79676 * 164.25698 * 9 8 6 29 29 H 1.09003 * 109.79180 * 285.10496 * 9 8 6 30 30 H 1.09004 * 109.57272 * 177.00846 * 10 9 8 31 31 H 1.09000 * 109.68122 * 56.68684 * 10 9 8 32 32 H 0.96995 * 120.00010 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1995 1.1973 0.0000 4 6 3.5808 1.2001 -0.0017 5 6 4.2821 0.0057 -0.0040 6 6 3.5889 -1.1945 -0.0004 7 6 2.1980 -1.1948 0.0005 8 7 4.2704 -2.4164 0.0037 9 6 5.7084 -2.4290 -0.2973 10 6 6.3611 -1.2809 0.4838 11 6 5.7875 0.0449 -0.0157 12 1 6.1353 0.2277 -1.0324 13 6 6.2637 1.1615 0.8773 14 1 5.7238 1.3965 1.7826 15 6 7.3886 1.8832 0.5384 16 7 7.8564 2.7966 1.3610 17 14 8.2481 1.5637 -1.0890 18 1 7.5884 2.3523 -2.1605 19 1 9.6734 1.9671 -0.9836 20 1 8.1659 0.1177 -1.4167 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6590 2.1322 0.0008 25 1 4.1164 2.1379 -0.0021 26 1 1.6586 -2.1304 0.0014 27 1 3.8018 -3.2414 0.2059 28 1 6.1421 -3.3797 0.0126 29 1 5.8631 -2.2829 -1.3663 30 1 7.4391 -1.2963 0.3228 31 1 6.1489 -1.3931 1.5470 32 1 8.6480 3.3040 1.1228 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083965650.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:36 Heat of formation + Delta-G solvation = 12.550292 kcal Electronic energy + Delta-G solvation = -14455.331742 eV Core-core repulsion = 12186.697244 eV Total energy + Delta-G solvation = -2268.634498 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.35281 -36.07368 -33.73321 -31.77261 -31.07707 -29.00301 -26.72967 -25.44632 -22.75793 -21.31200 -21.19468 -18.52079 -16.91810 -16.58747 -15.20877 -15.10870 -14.26516 -13.57700 -13.46120 -13.09857 -12.93308 -12.84844 -12.35450 -12.05789 -11.88051 -11.68228 -11.44088 -10.94008 -10.58664 -10.50200 -10.06120 -9.84353 -9.52766 -9.25098 -9.03625 -8.57848 -7.71682 -6.67150 -6.07963 -4.06430 2.19462 2.35859 3.27668 3.36391 3.36992 4.05697 4.40582 4.60481 5.20556 5.39457 5.49631 5.62389 5.73086 5.87034 5.90560 5.94740 6.03871 6.11132 6.14790 6.32999 6.42506 6.63715 6.74103 6.92147 7.00683 7.12067 7.24932 7.34999 7.56527 7.68082 7.78151 8.05020 8.37713 8.54990 8.99103 9.54182 11.05032 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.010486 C = 0.008667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.958603 B = 2669.621272 C = 3229.891847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.071 4.071 3 C -0.182 4.182 4 C -0.055 4.055 5 C -0.112 4.112 6 C 0.202 3.798 7 C -0.202 4.202 8 N -0.756 5.756 9 C 0.120 3.880 10 C -0.128 4.128 11 C 0.053 3.947 12 H 0.039 0.961 13 C -0.502 4.502 14 H 0.075 0.925 15 C 0.071 3.929 16 N -0.899 5.899 17 Si 0.874 3.126 18 H -0.275 1.275 19 H -0.290 1.290 20 H -0.265 1.265 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.108 0.892 25 H 0.130 0.870 26 H 0.106 0.894 27 H 0.391 0.609 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.653 -8.272 -4.173 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.074 4.074 5 C -0.116 4.116 6 C 0.100 3.900 7 C -0.225 4.225 8 N -0.388 5.388 9 C -0.005 4.005 10 C -0.167 4.167 11 C 0.034 3.966 12 H 0.056 0.944 13 C -0.540 4.540 14 H 0.093 0.907 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.701 3.299 18 H -0.201 1.201 19 H -0.216 1.216 20 H -0.190 1.190 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.126 0.874 25 H 0.148 0.852 26 H 0.124 0.876 27 H 0.224 0.776 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.294 -8.095 -4.192 12.325 hybrid contribution 0.439 -0.406 -0.663 0.893 sum -7.855 -8.502 -4.855 12.552 Atomic orbital electron populations 1.20686 0.92363 1.01719 1.01459 1.19421 0.94778 0.92975 1.00023 1.20740 0.94462 0.96539 1.08405 1.21119 0.92795 0.98581 0.94900 1.19901 0.97206 0.90629 1.03899 1.17697 0.90449 0.86278 0.95526 1.20299 0.92008 0.97188 1.12997 1.44554 1.08663 1.05590 1.80014 1.21636 0.80779 0.99312 0.98760 1.22155 0.99346 0.95298 0.99883 1.18018 0.87625 0.94137 0.96804 0.94366 1.20921 1.10776 1.13887 1.08378 0.90664 1.25066 0.96543 0.94861 0.96607 1.69900 1.23594 1.24163 1.36051 0.86914 0.78810 0.79175 0.84971 1.20116 1.21593 1.19006 0.91959 0.92138 0.92459 0.87425 0.85168 0.87580 0.77557 0.91778 0.93476 0.91978 0.91857 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 36.01 0.36 -0.99 16 2 C -0.07 -1.21 5.88 -104.67 -0.62 -1.82 16 3 C -0.18 -3.36 9.69 -39.60 -0.38 -3.75 16 4 C -0.06 -1.19 9.09 -39.52 -0.36 -1.55 16 5 C -0.11 -2.48 5.46 -104.44 -0.57 -3.05 16 6 C 0.20 3.92 6.48 -83.72 -0.54 3.37 16 7 C -0.20 -3.51 9.53 -39.35 -0.38 -3.89 16 8 N -0.76 -12.69 5.80 -58.09 -0.34 -13.02 16 9 C 0.12 2.03 7.11 -3.59 -0.03 2.00 16 10 C -0.13 -2.68 5.38 -26.58 -0.14 -2.82 16 11 C 0.05 1.25 1.91 -93.05 -0.18 1.08 16 12 H 0.04 0.93 5.28 -51.93 -0.27 0.66 16 13 C -0.50 -13.82 7.43 -34.44 -0.26 -14.07 16 14 H 0.08 2.30 8.04 -52.49 -0.42 1.87 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 17 Si 0.87 21.17 26.93 -169.99 -4.58 16.59 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.27 -6.09 6.67 56.52 0.38 -5.71 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 23 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 24 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 25 H 0.13 2.97 7.25 -52.49 -0.38 2.59 16 26 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 27 H 0.39 5.35 8.86 -40.82 -0.36 4.98 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 31 H 0.06 1.38 8.12 -51.93 -0.42 0.96 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 261.52 15.07 3.94 3.94 Total: -1.00 -29.92 261.52 -7.77 -37.69 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.39 Total: 4.67 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -3.18 Total: -23.59 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.44 Total: -39.30 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.58 Total: 16.59 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.92 -7.77 -37.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083965650.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.237 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds