Wall clock time and date at job start Mon Mar 30 2020 02:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38308 * 120.04314 * 2 1 4 4 C 1.38129 * 120.16141 * 180.08195 * 3 2 1 5 5 C 1.38505 * 120.30299 * 0.02562 * 4 3 2 6 6 C 1.38610 * 119.56813 * 359.80685 * 5 4 3 7 7 C 1.38018 * 120.04212 * 179.97438 * 2 1 3 8 8 N 1.39911 * 120.84020 * 180.30048 * 6 5 4 9 9 C 1.46926 * 118.92139 * 346.43836 * 8 6 5 10 10 C 1.53428 * 107.79944 * 44.67595 * 9 8 6 11 11 C 1.50590 * 118.93017 * 179.56848 * 5 4 3 12 12 H 1.09000 * 109.30500 * 279.85855 * 11 5 4 13 13 C 1.50698 * 109.30076 * 39.23463 * 11 5 4 14 14 H 1.07998 * 120.00125 * 35.44665 * 13 11 5 15 15 C 1.37881 * 119.99978 * 215.44963 * 13 11 5 16 16 N 1.31519 * 119.99935 * 184.59419 * 15 13 11 17 17 Si 1.86796 * 120.00025 * 4.59444 * 15 13 11 18 18 H 1.48501 * 109.47157 * 84.81319 * 17 15 13 19 19 H 1.48499 * 109.47030 * 204.81062 * 17 15 13 20 20 H 1.48497 * 109.47326 * 324.81487 * 17 15 13 21 21 H 1.09000 * 109.46690 * 270.02349 * 1 2 3 22 22 H 1.09001 * 109.46732 * 30.02184 * 1 2 3 23 23 H 1.08998 * 109.46941 * 150.02249 * 1 2 3 24 24 H 1.07997 * 119.92392 * 0.05189 * 3 2 1 25 25 H 1.07995 * 119.84760 * 179.97438 * 4 3 2 26 26 H 1.08001 * 119.99171 * 359.97438 * 7 2 1 27 27 H 0.97003 * 120.53738 * 166.16588 * 8 6 5 28 28 H 1.08998 * 109.79676 * 164.25698 * 9 8 6 29 29 H 1.09003 * 109.79180 * 285.10496 * 9 8 6 30 30 H 1.09004 * 109.57272 * 177.00846 * 10 9 8 31 31 H 1.09000 * 109.68122 * 56.68684 * 10 9 8 32 32 H 0.96995 * 120.00010 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1995 1.1973 0.0000 4 6 3.5808 1.2001 -0.0017 5 6 4.2821 0.0057 -0.0040 6 6 3.5889 -1.1945 -0.0004 7 6 2.1980 -1.1948 0.0005 8 7 4.2704 -2.4164 0.0037 9 6 5.7084 -2.4290 -0.2973 10 6 6.3611 -1.2809 0.4838 11 6 5.7875 0.0449 -0.0157 12 1 6.1353 0.2277 -1.0324 13 6 6.2637 1.1615 0.8773 14 1 5.7238 1.3965 1.7826 15 6 7.3886 1.8832 0.5384 16 7 7.8564 2.7966 1.3610 17 14 8.2481 1.5637 -1.0890 18 1 7.5884 2.3523 -2.1605 19 1 9.6734 1.9671 -0.9836 20 1 8.1659 0.1177 -1.4167 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6590 2.1322 0.0008 25 1 4.1164 2.1379 -0.0021 26 1 1.6586 -2.1304 0.0014 27 1 3.8018 -3.2414 0.2059 28 1 6.1421 -3.3797 0.0126 29 1 5.8631 -2.2829 -1.3663 30 1 7.4391 -1.2963 0.3228 31 1 6.1489 -1.3931 1.5470 32 1 8.6480 3.3040 1.1228 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083965650.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:36 Heat of formation + Delta-G solvation = -6.293641 kcal Electronic energy + Delta-G solvation = -14456.148876 eV Core-core repulsion = 12186.697244 eV Total energy + Delta-G solvation = -2269.451632 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85303 -37.53204 -35.53438 -33.62766 -32.54062 -30.54070 -28.19276 -27.13613 -24.31652 -22.91660 -22.76897 -20.07789 -19.04364 -18.00749 -16.76711 -16.62667 -16.15398 -14.99740 -14.81614 -14.77818 -14.44848 -14.27990 -14.14562 -13.55416 -13.36792 -12.95292 -12.84589 -12.75242 -12.38707 -12.00880 -11.82939 -11.65015 -11.17933 -11.09798 -10.71738 -10.63685 -9.22771 -8.28146 -8.10510 -6.30000 0.70713 0.86686 1.33482 1.34637 1.45518 2.34314 2.73890 3.04847 3.11960 4.09824 4.18557 4.30276 4.34089 4.41886 4.54436 4.63364 4.71737 4.78127 4.90224 4.95305 5.04414 5.08978 5.16326 5.36949 5.44653 5.50234 5.58605 5.71167 5.89115 6.07282 6.15084 6.38065 6.56807 6.76712 7.14503 7.33246 8.89153 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.010486 C = 0.008667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.958603 B = 2669.621272 C = 3229.891847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.063 4.063 3 C -0.191 4.191 4 C -0.080 4.080 5 C -0.154 4.154 6 C 0.198 3.802 7 C -0.199 4.199 8 N -0.747 5.747 9 C 0.127 3.873 10 C -0.127 4.127 11 C 0.053 3.947 12 H 0.032 0.968 13 C -0.497 4.497 14 H 0.024 0.976 15 C 0.011 3.989 16 N -0.951 5.951 17 Si 0.939 3.061 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.240 1.240 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.124 0.876 25 H 0.096 0.904 26 H 0.142 0.858 27 H 0.410 0.590 28 H 0.106 0.894 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.399 -11.138 -5.779 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.064 4.064 3 C -0.211 4.211 4 C -0.099 4.099 5 C -0.158 4.158 6 C 0.095 3.905 7 C -0.221 4.221 8 N -0.380 5.380 9 C 0.002 3.998 10 C -0.166 4.166 11 C 0.034 3.966 12 H 0.049 0.951 13 C -0.535 4.535 14 H 0.043 0.957 15 C -0.185 4.185 16 N -0.591 5.591 17 Si 0.763 3.237 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.163 1.163 21 H 0.094 0.906 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.142 0.858 25 H 0.114 0.886 26 H 0.160 0.840 27 H 0.247 0.753 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.062 -11.008 -5.798 16.001 hybrid contribution 0.842 0.514 -0.065 0.989 sum -9.220 -10.494 -5.863 15.149 Atomic orbital electron populations 1.20761 0.88825 1.03503 1.02859 1.19940 0.97271 0.91972 0.97192 1.20941 0.93201 0.98496 1.08452 1.21007 0.94428 0.97379 0.97109 1.19830 0.96349 0.92255 1.07383 1.17802 0.91532 0.86157 0.94973 1.20710 0.91170 0.98868 1.11384 1.44512 1.08637 1.05480 1.79361 1.21614 0.80606 0.99235 0.98331 1.22019 0.99540 0.95667 0.99381 1.17952 0.89383 0.94020 0.95260 0.95054 1.21063 1.10006 1.15267 1.07164 0.95740 1.25921 0.97501 0.94639 1.00485 1.70059 1.24626 1.25955 1.38497 0.85851 0.77361 0.80472 0.79976 1.19761 1.21224 1.16340 0.90557 0.90958 0.90206 0.85777 0.88571 0.83979 0.75290 0.87611 0.92930 0.92137 0.93667 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.18 10.01 71.24 0.71 -1.47 16 2 C -0.06 -1.95 5.88 -19.90 -0.12 -2.07 16 3 C -0.19 -7.01 9.69 22.26 0.22 -6.79 16 4 C -0.08 -3.61 9.09 22.31 0.20 -3.41 16 5 C -0.15 -6.91 5.46 -19.75 -0.11 -7.02 16 6 C 0.20 7.30 6.48 38.14 0.25 7.54 16 7 C -0.20 -6.21 9.53 22.42 0.21 -5.99 16 8 N -0.75 -22.54 5.80 -337.68 -1.96 -24.50 16 9 C 0.13 3.88 7.11 86.44 0.61 4.49 16 10 C -0.13 -5.24 5.38 30.69 0.16 -5.07 16 11 C 0.05 2.54 1.91 -12.37 -0.02 2.52 16 12 H 0.03 1.53 5.28 -2.39 -0.01 1.52 16 13 C -0.50 -29.02 7.43 25.60 0.19 -28.83 16 14 H 0.02 1.62 8.04 -2.91 -0.02 1.60 16 15 C 0.01 0.65 5.47 84.65 0.46 1.11 16 16 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 17 Si 0.94 44.63 26.93 68.60 1.85 46.48 16 18 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.24 -10.33 6.67 99.48 0.66 -9.67 16 21 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 23 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 24 H 0.12 3.99 8.06 -2.91 -0.02 3.96 16 25 H 0.10 4.81 7.25 -2.91 -0.02 4.79 16 26 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 27 H 0.41 9.34 8.86 -92.71 -0.82 8.52 16 28 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 31 H 0.04 1.98 8.12 -2.39 -0.02 1.96 16 32 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -69.22 261.52 3.21 -66.01 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.25 Total: 16.98 kcal Atomic # 6 Polarization: -47.77 SS G_CDS: 2.78 Total: -44.99 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -1.66 Total: -84.48 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.85 Total: 46.48 kcal Total: -69.22 3.21 -66.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083965650.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.714 kcal (2) G-P(sol) polarization free energy of solvation -69.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds