Wall clock time and date at job start Mon Mar 30 2020 02:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38304 * 120.04916 * 2 1 4 4 C 1.38122 * 120.16254 * 179.88185 * 3 2 1 5 5 C 1.38492 * 120.30742 * 0.02562 * 4 3 2 6 6 C 1.38602 * 119.56738 * 0.14744 * 5 4 3 7 7 C 1.38023 * 120.04080 * 179.97438 * 2 1 3 8 8 N 1.39918 * 120.84225 * 179.54134 * 6 5 4 9 9 C 1.46929 * 118.92480 * 13.64953 * 8 6 5 10 10 C 1.53432 * 107.79670 * 315.30967 * 9 8 6 11 11 C 1.50596 * 118.94183 * 180.43022 * 5 4 3 12 12 H 1.08998 * 109.30696 * 80.26252 * 11 5 4 13 13 C 1.50703 * 109.29918 * 320.88749 * 11 5 4 14 14 H 1.08005 * 120.00015 * 324.87593 * 13 11 5 15 15 C 1.37873 * 120.00390 * 144.87247 * 13 11 5 16 16 N 1.31525 * 119.99779 * 5.09609 * 15 13 11 17 17 Si 1.86803 * 120.00475 * 185.09146 * 15 13 11 18 18 H 1.48503 * 109.46431 * 60.00382 * 17 15 13 19 19 H 1.48500 * 109.47009 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47063 * 300.00599 * 17 15 13 21 21 H 1.08997 * 109.47306 * 89.99952 * 1 2 3 22 22 H 1.08997 * 109.47165 * 210.00061 * 1 2 3 23 23 H 1.09005 * 109.47103 * 329.99838 * 1 2 3 24 24 H 1.08003 * 119.91687 * 359.91352 * 3 2 1 25 25 H 1.08001 * 119.84463 * 180.02562 * 4 3 2 26 26 H 1.08002 * 119.98801 * 359.97438 * 7 2 1 27 27 H 0.97005 * 120.54095 * 193.66622 * 8 6 5 28 28 H 1.09000 * 109.79096 * 74.88371 * 9 8 6 29 29 H 1.08993 * 109.79076 * 195.73260 * 9 8 6 30 30 H 1.09004 * 109.57167 * 182.97971 * 10 9 8 31 31 H 1.08998 * 109.57171 * 303.22934 * 10 9 8 32 32 H 0.96998 * 119.99776 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1996 1.1972 0.0000 4 6 3.5808 1.1999 0.0025 5 6 4.2820 0.0056 0.0044 6 6 3.5888 -1.1946 0.0008 7 6 2.1980 -1.1948 0.0005 8 7 4.2703 -2.4165 -0.0070 9 6 5.7087 -2.4300 0.2922 10 6 6.3606 -1.2804 -0.4873 11 6 5.7875 0.0445 0.0170 12 1 6.1348 0.2245 1.0343 13 6 6.2642 1.1635 -0.8728 14 1 5.7218 1.4044 -1.7751 15 6 7.3929 1.8797 -0.5350 16 7 8.1100 1.5234 0.5083 17 14 7.9036 3.3561 -1.5591 18 1 6.8177 4.3690 -1.5430 19 1 9.1417 3.9479 -0.9915 20 1 8.1575 2.9248 -2.9572 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6590 2.1322 -0.0014 25 1 4.1164 2.1377 0.0029 26 1 1.6585 -2.1304 0.0014 27 1 3.8007 -3.2415 -0.2069 28 1 5.8646 -2.2862 1.3614 29 1 6.1418 -3.3801 -0.0202 30 1 7.4387 -1.2960 -0.3275 31 1 6.1473 -1.3928 -1.5503 32 1 8.9043 2.0270 0.7458 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083965652.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:38 Heat of formation + Delta-G solvation = -7.312695 kcal Electronic energy + Delta-G solvation = -14403.632917 eV Core-core repulsion = 12134.137096 eV Total energy + Delta-G solvation = -2269.495822 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76793 -37.45124 -35.53027 -33.39831 -32.37144 -30.36225 -28.09733 -27.02340 -24.41545 -23.06684 -22.71185 -20.03002 -18.47890 -17.93569 -16.82837 -16.56712 -16.10587 -15.07631 -14.77054 -14.49740 -14.32959 -14.22450 -14.05634 -13.33127 -13.18081 -12.86416 -12.81600 -12.73424 -12.43672 -12.17916 -11.90828 -11.59165 -11.04812 -10.99367 -10.63093 -10.45521 -9.20120 -8.18887 -8.01018 -6.21802 0.76308 0.90742 1.39256 1.40561 1.48565 2.41641 2.77009 3.13938 3.18106 4.15903 4.23908 4.35858 4.45938 4.49914 4.61252 4.67970 4.77015 4.86443 4.97051 5.03092 5.16640 5.21047 5.25228 5.48505 5.55821 5.63702 5.71737 5.81389 5.92557 6.13014 6.22303 6.41741 6.62036 6.90859 7.18695 7.43462 8.94736 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.030277 B = 0.010146 C = 0.007979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.564251 B = 2759.128744 C = 3508.342584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.067 4.067 3 C -0.189 4.189 4 C -0.082 4.082 5 C -0.151 4.151 6 C 0.191 3.809 7 C -0.199 4.199 8 N -0.747 5.747 9 C 0.130 3.870 10 C -0.112 4.112 11 C 0.075 3.925 12 H 0.021 0.979 13 C -0.512 4.512 14 H 0.044 0.956 15 C 0.014 3.986 16 N -0.925 5.925 17 Si 0.950 3.050 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.272 1.272 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.127 0.873 25 H 0.099 0.901 26 H 0.139 0.861 27 H 0.409 0.591 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.117 -6.198 -0.800 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.068 4.068 3 C -0.209 4.209 4 C -0.101 4.101 5 C -0.156 4.156 6 C 0.089 3.911 7 C -0.222 4.222 8 N -0.380 5.380 9 C 0.005 3.995 10 C -0.151 4.151 11 C 0.056 3.944 12 H 0.039 0.961 13 C -0.550 4.550 14 H 0.062 0.938 15 C -0.185 4.185 16 N -0.564 5.564 17 Si 0.776 3.224 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.197 1.197 21 H 0.095 0.905 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.145 0.855 25 H 0.118 0.882 26 H 0.157 0.843 27 H 0.245 0.755 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.753 -6.138 -0.653 12.399 hybrid contribution 0.859 0.803 -0.467 1.265 sum -9.894 -5.335 -1.120 11.296 Atomic orbital electron populations 1.20744 0.88843 1.03380 1.02853 1.19921 0.97226 0.91990 0.97666 1.20944 0.93191 0.98415 1.08336 1.20992 0.94281 0.97346 0.97505 1.20108 0.97106 0.92225 1.06127 1.17875 0.91565 0.86251 0.95411 1.20691 0.91090 0.98877 1.11520 1.44489 1.08422 1.05561 1.79523 1.21535 0.80763 0.99231 0.97973 1.21785 0.98984 0.96013 0.98325 1.17578 0.87326 0.93364 0.96117 0.96103 1.21234 1.09815 1.16209 1.07750 0.93809 1.25717 0.96436 0.99970 0.96345 1.70047 1.16898 1.41200 1.28293 0.85728 0.77634 0.79990 0.79071 1.19611 1.20752 1.19722 0.90458 0.90482 0.90946 0.85548 0.88237 0.84276 0.75466 0.94045 0.88171 0.93529 0.94142 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 10.01 71.24 0.71 -1.49 16 2 C -0.07 -2.14 5.88 -19.90 -0.12 -2.25 16 3 C -0.19 -6.94 9.69 22.26 0.22 -6.72 16 4 C -0.08 -3.73 9.08 22.30 0.20 -3.52 16 5 C -0.15 -7.12 5.46 -19.75 -0.11 -7.23 16 6 C 0.19 7.51 6.48 38.14 0.25 7.75 16 7 C -0.20 -6.54 9.53 22.42 0.21 -6.33 16 8 N -0.75 -24.96 5.80 -337.68 -1.96 -26.92 16 9 C 0.13 4.61 7.11 86.44 0.61 5.23 16 10 C -0.11 -5.16 5.38 30.71 0.17 -4.99 16 11 C 0.07 3.94 2.33 -12.35 -0.03 3.91 16 12 H 0.02 1.26 7.37 -2.39 -0.02 1.24 16 13 C -0.51 -29.13 6.88 25.60 0.18 -28.95 16 14 H 0.04 2.52 7.80 -2.91 -0.02 2.50 16 15 C 0.01 0.77 5.45 84.65 0.46 1.23 16 16 N -0.92 -54.98 12.84 21.45 0.28 -54.71 16 17 Si 0.95 44.70 29.54 68.60 2.03 46.72 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 23 H 0.07 1.41 8.09 -2.38 -0.02 1.39 16 24 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 25 H 0.10 4.87 7.24 -2.91 -0.02 4.85 16 26 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 27 H 0.41 10.48 8.86 -92.70 -0.82 9.66 16 28 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.04 1.88 8.13 -2.39 -0.02 1.86 16 32 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -64.92 265.35 3.38 -61.54 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.28 Total: 16.73 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 2.76 Total: -43.37 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -1.68 Total: -81.62 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -64.92 3.38 -61.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083965652.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.226 kcal (2) G-P(sol) polarization free energy of solvation -64.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds