Wall clock time and date at job start Mon Mar 30 2020 02:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38258 * 120.03114 * 2 1 4 4 C 1.38107 * 119.93364 * 180.30062 * 3 2 1 5 5 C 1.38496 * 120.21222 * 359.43709 * 4 3 2 6 6 C 1.38213 * 119.85318 * 0.55781 * 5 4 3 7 7 C 1.38098 * 120.03428 * 180.02562 * 2 1 3 8 8 C 1.51369 * 109.76209 * 179.69954 * 6 5 4 9 9 N 1.46904 * 110.30194 * 136.20900 * 8 6 5 10 10 C 1.50692 * 110.30539 * 258.26801 * 8 6 5 11 11 H 1.08001 * 120.00565 * 359.97438 * 10 8 6 12 12 C 1.37880 * 119.99844 * 180.02562 * 10 8 6 13 13 N 1.31519 * 119.99845 * 180.02562 * 12 10 8 14 14 Si 1.86794 * 120.00273 * 359.97438 * 12 10 8 15 15 H 1.48496 * 109.47340 * 90.00143 * 14 12 10 16 16 H 1.48497 * 109.47440 * 210.00674 * 14 12 10 17 17 H 1.48499 * 109.46952 * 330.00396 * 14 12 10 18 18 C 1.54349 * 105.16738 * 17.19310 * 8 6 5 19 19 C 1.51372 * 130.39033 * 180.19377 * 5 4 3 20 20 H 1.08998 * 109.46700 * 90.00418 * 1 2 3 21 21 H 1.08995 * 109.46712 * 210.00357 * 1 2 3 22 22 H 1.08992 * 109.47320 * 330.00650 * 1 2 3 23 23 H 1.08002 * 120.03017 * 0.02562 * 3 2 1 24 24 H 1.07996 * 119.88894 * 179.72263 * 4 3 2 25 25 H 1.07995 * 119.89258 * 359.95836 * 7 2 1 26 26 H 1.00895 * 111.00111 * 180.02562 * 9 8 6 27 27 H 1.00903 * 111.00149 * 303.95622 * 9 8 6 28 28 H 0.97001 * 119.99738 * 180.02562 * 13 12 10 29 29 H 1.08995 * 110.82495 * 91.87910 * 18 8 6 30 30 H 1.08999 * 110.82124 * 215.42865 * 18 8 6 31 31 H 1.09000 * 110.30223 * 44.22331 * 19 5 4 32 32 H 1.09003 * 110.38197 * 282.11736 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1970 0.0000 4 6 3.5800 1.1946 -0.0063 5 6 4.2750 -0.0034 -0.0008 6 6 3.5833 -1.2000 -0.0007 7 6 2.1983 -1.1956 -0.0005 8 6 4.5605 -2.3560 -0.0017 9 7 4.1306 -3.3876 0.9517 10 6 4.6777 -2.9404 -1.3858 11 1 4.1025 -2.5228 -2.1989 12 6 5.5185 -4.0091 -1.6139 13 7 5.6211 -4.5189 -2.8219 14 14 6.5128 -4.7321 -0.2075 15 1 5.7294 -5.8083 0.4507 16 1 7.7810 -5.2954 -0.7362 17 1 6.8186 -3.6671 0.7812 18 6 5.9083 -1.7458 0.4379 19 6 5.7644 -0.2733 -0.0018 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3632 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6600 2.1329 0.0004 24 1 4.1198 2.1300 -0.0108 25 1 1.6571 -2.1301 -0.0003 26 1 4.7753 -4.1636 0.9598 27 1 4.0190 -3.0009 1.8770 28 1 6.2123 -5.2710 -2.9822 29 1 6.0320 -1.8172 1.5184 30 1 6.7384 -2.2256 -0.0807 31 1 6.2684 0.3840 0.7068 32 1 6.1746 -0.1355 -1.0022 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084347042.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:23 Heat of formation + Delta-G solvation = 32.796488 kcal Electronic energy + Delta-G solvation = -14652.289919 eV Core-core repulsion = 12384.533361 eV Total energy + Delta-G solvation = -2267.756557 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.64466 -36.34114 -32.98117 -31.78639 -30.15893 -29.66193 -26.47916 -25.52354 -23.36980 -21.95115 -20.14544 -18.99599 -16.39470 -15.89308 -15.28023 -14.81125 -14.26951 -13.83718 -13.59542 -13.26870 -12.82947 -12.76824 -12.44019 -11.81839 -11.64031 -11.48005 -11.35146 -11.31998 -10.68206 -10.45513 -10.27388 -9.83882 -9.43030 -9.24484 -8.68323 -8.07968 -7.71094 -7.59401 -6.15494 -4.16530 1.98070 2.09555 3.16842 3.20072 3.30014 4.28720 4.39361 4.99419 5.20387 5.32987 5.43233 5.55736 5.67755 5.74318 5.88729 5.91316 5.97983 6.08266 6.20445 6.25325 6.38332 6.54490 6.62788 6.72962 6.82162 6.93434 7.07204 7.20208 7.45595 7.49629 7.68076 8.21077 8.29184 8.56221 8.90498 9.44798 10.97411 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.038313 B = 0.010426 C = 0.009595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.644793 B = 2685.001570 C = 2917.579432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.103 4.103 3 C -0.136 4.136 4 C -0.115 4.115 5 C -0.106 4.106 6 C -0.035 4.035 7 C -0.090 4.090 8 C 0.247 3.753 9 N -0.833 5.833 10 C -0.485 4.485 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.893 5.893 14 Si 0.860 3.140 15 H -0.276 1.276 16 H -0.294 1.294 17 H -0.246 1.246 18 C -0.154 4.154 19 C -0.068 4.068 20 H 0.064 0.936 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.121 0.879 26 H 0.320 0.680 27 H 0.312 0.688 28 H 0.265 0.735 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 8.360 7.591 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.103 4.103 3 C -0.154 4.154 4 C -0.133 4.133 5 C -0.107 4.107 6 C -0.036 4.036 7 C -0.109 4.109 8 C 0.156 3.844 9 N -0.367 5.367 10 C -0.524 4.524 11 H 0.097 0.903 12 C -0.126 4.126 13 N -0.530 5.530 14 Si 0.689 3.311 15 H -0.203 1.203 16 H -0.221 1.221 17 H -0.171 1.171 18 C -0.195 4.195 19 C -0.106 4.106 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.130 0.870 24 H 0.128 0.872 25 H 0.139 0.861 26 H 0.138 0.862 27 H 0.124 0.876 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.985 8.125 7.006 11.444 hybrid contribution 1.496 -0.338 1.005 1.834 sum -2.489 7.787 8.011 11.445 Atomic orbital electron populations 1.20691 0.91873 1.01941 1.01789 1.19734 0.95459 0.93223 1.01889 1.20681 0.93759 0.96915 1.04071 1.20439 0.93784 0.96544 1.02541 1.20655 0.96363 0.93305 1.00360 1.20612 0.93319 0.95035 0.94589 1.20527 0.93378 0.97092 0.99875 1.18469 0.86333 0.86522 0.93097 1.59493 1.55675 1.11656 1.09864 1.20661 1.25353 1.15111 0.91237 0.90334 1.24972 0.96350 0.96017 0.95285 1.69877 1.38259 1.24572 1.20309 0.87568 0.79684 0.80081 0.83730 1.20311 1.22113 1.17090 1.23607 1.01983 0.95591 0.98271 1.20889 0.91541 0.96769 1.01353 0.91716 0.91872 0.92309 0.86990 0.87230 0.86138 0.86192 0.87636 0.92476 0.93737 0.90442 0.92541 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 36.01 0.36 -1.05 16 2 C -0.10 -1.76 5.88 -104.66 -0.62 -2.37 16 3 C -0.14 -2.21 9.70 -39.62 -0.38 -2.59 16 4 C -0.11 -1.98 10.04 -39.53 -0.40 -2.38 16 5 C -0.11 -2.11 6.14 -104.21 -0.64 -2.75 16 6 C -0.03 -0.76 5.00 -104.20 -0.52 -1.28 16 7 C -0.09 -1.82 9.66 -39.54 -0.38 -2.20 16 8 C 0.25 5.77 0.72 -132.87 -0.10 5.68 16 9 N -0.83 -18.49 8.88 -0.29 0.00 -18.49 16 10 C -0.49 -13.57 8.83 -34.44 -0.30 -13.88 16 11 H 0.08 2.46 8.01 -52.49 -0.42 2.04 16 12 C 0.08 2.16 5.38 -17.82 -0.10 2.07 16 13 N -0.89 -26.97 13.96 55.43 0.77 -26.19 16 14 Si 0.86 20.42 23.06 -169.99 -3.92 16.50 16 15 H -0.28 -6.50 6.98 56.52 0.39 -6.10 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.25 -5.31 4.61 56.52 0.26 -5.05 16 18 C -0.15 -3.27 4.27 -25.32 -0.11 -3.38 16 19 C -0.07 -1.30 6.76 -26.85 -0.18 -1.48 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 21 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 22 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 23 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 24 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 25 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 26 H 0.32 7.20 3.98 -39.29 -0.16 7.05 16 27 H 0.31 6.04 8.94 -39.29 -0.35 5.69 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.04 0.86 7.97 -51.93 -0.41 0.45 16 30 H 0.08 1.73 5.05 -51.93 -0.26 1.46 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 254.02 15.07 3.83 3.83 Total: -1.00 -30.13 254.02 -6.95 -37.08 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -4.26 Total: 12.89 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -3.36 Total: -25.62 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.77 Total: -44.68 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -3.92 Total: 16.50 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.13 -6.95 -37.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084347042.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.880 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds