Wall clock time and date at job start Mon Mar 30 2020 02:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38258 * 120.03114 * 2 1 4 4 C 1.38107 * 119.93364 * 180.30062 * 3 2 1 5 5 C 1.38496 * 120.21222 * 359.43709 * 4 3 2 6 6 C 1.38213 * 119.85318 * 0.55781 * 5 4 3 7 7 C 1.38098 * 120.03428 * 180.02562 * 2 1 3 8 8 C 1.51369 * 109.76209 * 179.69954 * 6 5 4 9 9 N 1.46904 * 110.30194 * 136.20900 * 8 6 5 10 10 C 1.50692 * 110.30539 * 258.26801 * 8 6 5 11 11 H 1.08001 * 120.00565 * 359.97438 * 10 8 6 12 12 C 1.37880 * 119.99844 * 180.02562 * 10 8 6 13 13 N 1.31519 * 119.99845 * 180.02562 * 12 10 8 14 14 Si 1.86794 * 120.00273 * 359.97438 * 12 10 8 15 15 H 1.48496 * 109.47340 * 90.00143 * 14 12 10 16 16 H 1.48497 * 109.47440 * 210.00674 * 14 12 10 17 17 H 1.48499 * 109.46952 * 330.00396 * 14 12 10 18 18 C 1.54349 * 105.16738 * 17.19310 * 8 6 5 19 19 C 1.51372 * 130.39033 * 180.19377 * 5 4 3 20 20 H 1.08998 * 109.46700 * 90.00418 * 1 2 3 21 21 H 1.08995 * 109.46712 * 210.00357 * 1 2 3 22 22 H 1.08992 * 109.47320 * 330.00650 * 1 2 3 23 23 H 1.08002 * 120.03017 * 0.02562 * 3 2 1 24 24 H 1.07996 * 119.88894 * 179.72263 * 4 3 2 25 25 H 1.07995 * 119.89258 * 359.95836 * 7 2 1 26 26 H 1.00895 * 111.00111 * 180.02562 * 9 8 6 27 27 H 1.00903 * 111.00149 * 303.95622 * 9 8 6 28 28 H 0.97001 * 119.99738 * 180.02562 * 13 12 10 29 29 H 1.08995 * 110.82495 * 91.87910 * 18 8 6 30 30 H 1.08999 * 110.82124 * 215.42865 * 18 8 6 31 31 H 1.09000 * 110.30223 * 44.22331 * 19 5 4 32 32 H 1.09003 * 110.38197 * 282.11736 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1970 0.0000 4 6 3.5800 1.1946 -0.0063 5 6 4.2750 -0.0034 -0.0008 6 6 3.5833 -1.2000 -0.0007 7 6 2.1983 -1.1956 -0.0005 8 6 4.5605 -2.3560 -0.0017 9 7 4.1306 -3.3876 0.9517 10 6 4.6777 -2.9404 -1.3858 11 1 4.1025 -2.5228 -2.1989 12 6 5.5185 -4.0091 -1.6139 13 7 5.6211 -4.5189 -2.8219 14 14 6.5128 -4.7321 -0.2075 15 1 5.7294 -5.8083 0.4507 16 1 7.7810 -5.2954 -0.7362 17 1 6.8186 -3.6671 0.7812 18 6 5.9083 -1.7458 0.4379 19 6 5.7644 -0.2733 -0.0018 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3632 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 1.6600 2.1329 0.0004 24 1 4.1198 2.1300 -0.0108 25 1 1.6571 -2.1301 -0.0003 26 1 4.7753 -4.1636 0.9598 27 1 4.0190 -3.0009 1.8770 28 1 6.2123 -5.2710 -2.9822 29 1 6.0320 -1.8172 1.5184 30 1 6.7384 -2.2256 -0.0807 31 1 6.2684 0.3840 0.7068 32 1 6.1746 -0.1355 -1.0022 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084347042.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:23 Heat of formation + Delta-G solvation = 12.024025 kcal Electronic energy + Delta-G solvation = -14653.190680 eV Core-core repulsion = 12384.533361 eV Total energy + Delta-G solvation = -2268.657319 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.15418 -37.89307 -34.72636 -33.69132 -31.58704 -31.10751 -28.36363 -26.98071 -25.10021 -23.39914 -21.68738 -20.60159 -18.40980 -17.78137 -16.77938 -16.20852 -15.86892 -15.40764 -15.36012 -14.75884 -14.40014 -14.24969 -14.00725 -13.22544 -13.20118 -13.03308 -12.88459 -12.75654 -12.42390 -12.15200 -11.75335 -11.43196 -11.40954 -10.97965 -10.81642 -9.53761 -9.34923 -9.11744 -8.33827 -6.40390 0.57609 0.66655 1.26508 1.29117 1.39099 2.26380 2.94614 2.98618 3.72256 3.86962 3.98861 4.15594 4.28628 4.30858 4.44119 4.55063 4.73389 4.82206 4.88482 4.90322 4.99996 5.02340 5.13381 5.22106 5.35358 5.46073 5.52990 5.64837 5.80426 5.99543 6.19244 6.33600 6.46402 6.52787 6.88481 7.25790 8.83065 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.038313 B = 0.010426 C = 0.009595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.644793 B = 2685.001570 C = 2917.579432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.103 4.103 3 C -0.130 4.130 4 C -0.112 4.112 5 C -0.123 4.123 6 C -0.072 4.072 7 C -0.116 4.116 8 C 0.244 3.756 9 N -0.840 5.840 10 C -0.490 4.490 11 H 0.022 0.978 12 C 0.016 3.984 13 N -0.947 5.947 14 Si 0.925 3.075 15 H -0.270 1.270 16 H -0.298 1.298 17 H -0.208 1.208 18 C -0.155 4.155 19 C -0.065 4.065 20 H 0.071 0.929 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.153 0.847 24 H 0.143 0.857 25 H 0.103 0.897 26 H 0.318 0.682 27 H 0.332 0.668 28 H 0.266 0.734 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 10.589 10.067 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.103 4.103 3 C -0.147 4.147 4 C -0.130 4.130 5 C -0.124 4.124 6 C -0.073 4.073 7 C -0.134 4.134 8 C 0.152 3.848 9 N -0.375 5.375 10 C -0.528 4.528 11 H 0.040 0.960 12 C -0.181 4.181 13 N -0.587 5.587 14 Si 0.751 3.249 15 H -0.196 1.196 16 H -0.225 1.225 17 H -0.131 1.131 18 C -0.195 4.195 19 C -0.102 4.102 20 H 0.089 0.911 21 H 0.083 0.917 22 H 0.106 0.894 23 H 0.170 0.830 24 H 0.161 0.839 25 H 0.121 0.879 26 H 0.136 0.864 27 H 0.146 0.854 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.158 10.382 9.507 14.678 hybrid contribution 1.390 -0.943 0.151 1.686 sum -2.769 9.439 9.657 13.785 Atomic orbital electron populations 1.20759 0.89159 1.03532 1.02671 1.20158 0.97515 0.92465 1.00125 1.21176 0.93668 0.98042 1.01841 1.20856 0.94497 0.96816 1.00847 1.20857 0.96540 0.93688 1.01310 1.20651 0.94007 0.95242 0.97388 1.20610 0.93156 0.97924 1.01725 1.18351 0.88606 0.87159 0.90634 1.59252 1.55780 1.11591 1.10919 1.20815 1.24206 1.15149 0.92644 0.95962 1.25891 0.97694 0.96401 0.98148 1.70055 1.39832 1.25650 1.23122 0.86503 0.77460 0.80033 0.80910 1.19646 1.22545 1.13117 1.23503 0.99669 0.96836 0.99526 1.20859 0.91748 0.96023 1.01584 0.91052 0.91708 0.89373 0.82983 0.83935 0.87899 0.86447 0.85442 0.92518 0.91223 0.91908 0.88928 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.48 10.01 71.24 0.71 -1.77 16 2 C -0.10 -3.29 5.88 -19.89 -0.12 -3.41 16 3 C -0.13 -3.70 9.70 22.24 0.22 -3.48 16 4 C -0.11 -3.48 10.04 22.30 0.22 -3.26 16 5 C -0.12 -4.69 6.14 -19.60 -0.12 -4.81 16 6 C -0.07 -3.15 5.00 -19.59 -0.10 -3.25 16 7 C -0.12 -4.67 9.66 22.30 0.22 -4.45 16 8 C 0.24 11.43 0.72 2.70 0.00 11.44 16 9 N -0.84 -36.73 8.88 -154.83 -1.37 -38.10 16 10 C -0.49 -28.68 8.83 25.60 0.23 -28.45 16 11 H 0.02 1.49 8.01 -2.91 -0.02 1.47 16 12 C 0.02 0.95 5.38 84.65 0.46 1.41 16 13 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 14 Si 0.93 42.66 23.06 68.60 1.58 44.25 16 15 H -0.27 -12.10 6.98 99.48 0.69 -11.41 16 16 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 17 H -0.21 -8.29 4.61 99.48 0.46 -7.83 16 18 C -0.16 -6.32 4.27 31.51 0.13 -6.19 16 19 C -0.06 -2.35 6.76 30.52 0.21 -2.15 16 20 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 21 H 0.06 1.51 8.09 -2.39 -0.02 1.49 16 22 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 23 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 24 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 25 H 0.10 4.35 8.06 -2.91 -0.02 4.32 16 26 H 0.32 13.87 3.98 -89.70 -0.36 13.52 16 27 H 0.33 12.31 8.94 -89.69 -0.80 11.51 16 28 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.07 2.47 7.97 -2.39 -0.02 2.45 16 30 H 0.06 2.71 5.05 -2.39 -0.01 2.69 16 31 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -69.33 254.02 2.27 -67.05 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: -0.29 Total: 34.94 kcal Atomic # 6 Polarization: -50.43 SS G_CDS: 2.06 Total: -48.37 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -1.08 Total: -97.87 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.58 Total: 44.25 kcal Total: -69.33 2.27 -67.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084347042.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.078 kcal (2) G-P(sol) polarization free energy of solvation -69.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds