Wall clock time and date at job start Mon Mar 30 2020 02:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00015 * 2 1 4 4 H 1.48495 * 109.46981 * 270.00405 * 3 2 1 5 5 H 1.48501 * 109.46643 * 30.00549 * 3 2 1 6 6 H 1.48496 * 109.46792 * 150.00478 * 3 2 1 7 7 C 1.37872 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00043 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00208 * 179.97438 * 7 2 1 10 10 H 1.08992 * 110.64416 * 61.69112 * 9 7 2 11 11 C 1.54595 * 110.72219 * 298.54401 * 9 7 2 12 12 C 1.53991 * 105.14011 * 219.68549 * 11 9 7 13 13 N 1.47896 * 107.05864 * 358.77597 * 12 11 9 14 14 C 1.39668 * 111.00488 * 145.84763 * 13 12 11 15 15 C 1.38911 * 120.07941 * 119.84612 * 14 13 12 16 16 C 1.38110 * 119.92390 * 179.77219 * 15 14 13 17 17 C 1.38278 * 120.07458 * 0.50974 * 16 15 14 18 18 C 1.38286 * 120.15262 * 359.74270 * 17 16 15 19 19 C 1.38103 * 120.07395 * 359.97438 * 18 17 16 20 20 C 1.48530 * 105.82158 * 25.32744 * 13 12 11 21 21 H 0.97003 * 119.99776 * 359.97438 * 1 2 3 22 22 H 1.09009 * 110.30710 * 338.59929 * 11 9 7 23 23 H 1.09001 * 110.30848 * 100.76361 * 11 9 7 24 24 H 1.09002 * 109.91713 * 118.12696 * 12 11 9 25 25 H 1.09005 * 109.91677 * 239.22424 * 12 11 9 26 26 H 1.08006 * 120.03710 * 0.02562 * 15 14 13 27 27 H 1.08002 * 119.95707 * 180.24880 * 16 15 14 28 28 H 1.08000 * 119.92617 * 179.77255 * 17 16 15 29 29 H 1.08003 * 119.96174 * 179.97438 * 18 17 16 30 30 H 1.08001 * 120.04046 * 180.02562 * 19 18 17 31 31 H 1.08998 * 110.67096 * 202.36118 * 20 13 12 32 32 H 1.09002 * 110.66509 * 79.23400 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8962 -0.7106 0.8968 11 6 4.0581 -0.5028 -1.2714 12 6 5.2702 -1.3503 -1.7005 13 7 5.4130 -2.4371 -0.7076 14 6 5.8781 -3.6080 -1.3105 15 6 7.0781 -4.1738 -0.8988 16 6 7.5327 -5.3342 -1.4939 17 6 6.7999 -5.9271 -2.5057 18 6 5.6075 -5.3636 -2.9216 19 6 5.1442 -4.2065 -2.3268 20 6 4.0598 -2.6375 -0.1290 21 1 -0.4850 0.8401 0.0004 22 1 3.3014 -0.5003 -2.0560 23 1 4.3707 0.5161 -1.0429 24 1 5.0965 -1.7722 -2.6904 25 1 6.1689 -0.7336 -1.7123 26 1 7.6530 -3.7089 -0.1114 27 1 8.4636 -5.7768 -1.1715 28 1 7.1594 -6.8325 -2.9719 29 1 5.0378 -5.8291 -3.7124 30 1 4.2126 -3.7672 -2.6517 31 1 4.1263 -3.1119 0.8500 32 1 3.4372 -3.2273 -0.8019 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084450141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:28 Heat of formation + Delta-G solvation = 35.162871 kcal Electronic energy + Delta-G solvation = -14259.628031 eV Core-core repulsion = 11991.974088 eV Total energy + Delta-G solvation = -2267.653943 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.79479 -37.35735 -33.29505 -31.48605 -30.75672 -28.64257 -28.07377 -24.45610 -22.61044 -21.92050 -20.17300 -19.55618 -17.29886 -16.41884 -15.68427 -15.19979 -14.45027 -14.30250 -13.76412 -13.52599 -13.25084 -12.67869 -12.62393 -12.03102 -11.80248 -11.44494 -11.20790 -11.04114 -10.66128 -10.57461 -10.02845 -9.92873 -9.60615 -9.04618 -8.77754 -8.58552 -8.38667 -8.07355 -6.10246 -4.10242 1.46298 1.55195 3.27837 3.37361 3.40266 3.90546 4.39336 4.41145 5.07441 5.09519 5.21299 5.24121 5.44681 5.58918 5.66248 5.74689 5.85244 5.95784 6.13323 6.20619 6.25853 6.47880 6.54911 6.63459 6.64468 6.72949 6.82669 6.95166 7.04584 7.20406 7.48348 7.75913 7.85768 8.48664 8.92230 9.52099 11.02722 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.057383 B = 0.007330 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.833661 B = 3818.758774 C = 4005.590184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.017 3.983 10 H 0.041 0.959 11 C -0.142 4.142 12 C 0.046 3.954 13 N -0.496 5.496 14 C 0.097 3.903 15 C -0.103 4.103 16 C -0.119 4.119 17 C -0.135 4.135 18 C -0.113 4.113 19 C -0.150 4.150 20 C 0.057 3.943 21 H 0.264 0.736 22 H 0.071 0.929 23 H 0.052 0.948 24 H 0.041 0.959 25 H 0.068 0.932 26 H 0.126 0.874 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.071 0.929 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.004 -7.351 -4.627 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.129 4.129 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.187 1.187 7 C -0.551 4.551 8 H 0.092 0.908 9 C -0.003 4.003 10 H 0.059 0.941 11 C -0.180 4.180 12 C -0.080 4.080 13 N -0.218 5.218 14 C 0.003 3.997 15 C -0.122 4.122 16 C -0.137 4.137 17 C -0.153 4.153 18 C -0.132 4.132 19 C -0.170 4.170 20 C -0.068 4.068 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.144 0.856 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.090 0.910 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.209 -7.075 -4.218 15.567 hybrid contribution -0.246 0.707 -0.727 1.043 sum 12.964 -6.368 -4.945 15.266 Atomic orbital electron populations 1.69903 1.06305 1.27002 1.50646 1.24969 0.94641 0.99024 0.94272 0.86911 0.80197 0.83584 0.78489 1.20331 1.21997 1.18749 1.20941 0.88354 0.94571 1.51274 0.90790 1.20062 0.96314 0.90556 0.93339 0.94114 1.22942 0.95717 0.98075 1.01276 1.22907 0.99179 0.92876 0.93080 1.62510 1.26695 1.03451 1.29121 1.19254 0.94405 0.92615 0.93468 1.21044 0.95461 0.95557 1.00093 1.21048 0.99837 0.95929 0.96924 1.21079 0.95693 1.00239 0.98272 1.21014 0.96382 0.95910 0.99863 1.21831 1.00646 0.96882 0.97600 1.23337 0.85093 0.99852 0.98563 0.92620 0.90986 0.92945 0.94047 0.91385 0.85614 0.86197 0.86501 0.86413 0.85841 0.91044 0.93355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 2 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 3 Si 0.88 21.59 24.72 -169.99 -4.20 17.39 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.26 -6.23 6.38 56.52 0.36 -5.87 16 7 C -0.51 -14.24 9.00 -34.44 -0.31 -14.55 16 8 H 0.07 2.22 8.03 -52.49 -0.42 1.80 16 9 C 0.02 0.40 2.46 -89.91 -0.22 0.17 16 10 H 0.04 0.99 7.36 -51.93 -0.38 0.61 16 11 C -0.14 -3.03 4.69 -25.38 -0.12 -3.15 16 12 C 0.05 0.84 6.51 -2.76 -0.02 0.82 16 13 N -0.50 -9.27 5.28 -167.17 -0.88 -10.15 16 14 C 0.10 1.62 4.85 -83.79 -0.41 1.21 16 15 C -0.10 -1.49 9.97 -39.38 -0.39 -1.88 16 16 C -0.12 -1.45 10.04 -39.61 -0.40 -1.85 16 17 C -0.13 -1.61 10.04 -39.55 -0.40 -2.01 16 18 C -0.11 -1.50 10.04 -39.61 -0.40 -1.89 16 19 C -0.15 -2.35 7.90 -39.38 -0.31 -2.67 16 20 C 0.06 1.18 5.82 -1.90 -0.01 1.17 16 21 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.07 1.61 7.80 -51.92 -0.40 1.20 16 23 H 0.05 1.10 5.94 -51.93 -0.31 0.79 16 24 H 0.04 0.72 6.69 -51.93 -0.35 0.37 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 27 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 30 H 0.12 2.03 7.05 -52.49 -0.37 1.66 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.05 1.02 6.55 -51.93 -0.34 0.68 16 LS Contribution 257.57 15.07 3.88 3.88 Total: -1.00 -29.60 257.57 -7.80 -37.40 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.29 Total: 0.69 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -3.08 Total: -22.64 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.11 Total: -36.71 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.20 Total: 17.39 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.60 -7.80 -37.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084450141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.558 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds