Wall clock time and date at job start Mon Mar 30 2020 02:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00015 * 2 1 4 4 H 1.48495 * 109.46981 * 270.00405 * 3 2 1 5 5 H 1.48501 * 109.46643 * 30.00549 * 3 2 1 6 6 H 1.48496 * 109.46792 * 150.00478 * 3 2 1 7 7 C 1.37872 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00043 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00208 * 179.97438 * 7 2 1 10 10 H 1.08992 * 110.64416 * 61.69112 * 9 7 2 11 11 C 1.54595 * 110.72219 * 298.54401 * 9 7 2 12 12 C 1.53991 * 105.14011 * 219.68549 * 11 9 7 13 13 N 1.47896 * 107.05864 * 358.77597 * 12 11 9 14 14 C 1.39668 * 111.00488 * 145.84763 * 13 12 11 15 15 C 1.38911 * 120.07941 * 119.84612 * 14 13 12 16 16 C 1.38110 * 119.92390 * 179.77219 * 15 14 13 17 17 C 1.38278 * 120.07458 * 0.50974 * 16 15 14 18 18 C 1.38286 * 120.15262 * 359.74270 * 17 16 15 19 19 C 1.38103 * 120.07395 * 359.97438 * 18 17 16 20 20 C 1.48530 * 105.82158 * 25.32744 * 13 12 11 21 21 H 0.97003 * 119.99776 * 359.97438 * 1 2 3 22 22 H 1.09009 * 110.30710 * 338.59929 * 11 9 7 23 23 H 1.09001 * 110.30848 * 100.76361 * 11 9 7 24 24 H 1.09002 * 109.91713 * 118.12696 * 12 11 9 25 25 H 1.09005 * 109.91677 * 239.22424 * 12 11 9 26 26 H 1.08006 * 120.03710 * 0.02562 * 15 14 13 27 27 H 1.08002 * 119.95707 * 180.24880 * 16 15 14 28 28 H 1.08000 * 119.92617 * 179.77255 * 17 16 15 29 29 H 1.08003 * 119.96174 * 179.97438 * 18 17 16 30 30 H 1.08001 * 120.04046 * 180.02562 * 19 18 17 31 31 H 1.08998 * 110.67096 * 202.36118 * 20 13 12 32 32 H 1.09002 * 110.66509 * 79.23400 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8962 -0.7106 0.8968 11 6 4.0581 -0.5028 -1.2714 12 6 5.2702 -1.3503 -1.7005 13 7 5.4130 -2.4371 -0.7076 14 6 5.8781 -3.6080 -1.3105 15 6 7.0781 -4.1738 -0.8988 16 6 7.5327 -5.3342 -1.4939 17 6 6.7999 -5.9271 -2.5057 18 6 5.6075 -5.3636 -2.9216 19 6 5.1442 -4.2065 -2.3268 20 6 4.0598 -2.6375 -0.1290 21 1 -0.4850 0.8401 0.0004 22 1 3.3014 -0.5003 -2.0560 23 1 4.3707 0.5161 -1.0429 24 1 5.0965 -1.7722 -2.6904 25 1 6.1689 -0.7336 -1.7123 26 1 7.6530 -3.7089 -0.1114 27 1 8.4636 -5.7768 -1.1715 28 1 7.1594 -6.8325 -2.9719 29 1 5.0378 -5.8291 -3.7124 30 1 4.2126 -3.7672 -2.6517 31 1 4.1263 -3.1119 0.8500 32 1 3.4372 -3.2273 -0.8019 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084450141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:27 Heat of formation + Delta-G solvation = 16.535729 kcal Electronic energy + Delta-G solvation = -14260.435764 eV Core-core repulsion = 11991.974088 eV Total energy + Delta-G solvation = -2268.461677 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.09621 -38.70738 -35.17947 -33.24527 -31.80660 -30.30750 -29.46628 -26.35870 -23.85260 -23.14795 -21.58427 -21.36498 -18.98119 -18.01101 -17.04652 -16.63921 -16.10884 -15.70416 -15.16814 -15.06715 -14.60140 -14.32048 -14.05524 -13.61071 -13.29714 -12.98913 -12.69941 -12.51650 -12.18458 -12.07283 -11.79901 -11.75153 -11.50095 -11.08314 -10.76259 -9.83136 -9.53663 -9.52322 -8.32118 -6.37099 0.37411 0.50307 1.32685 1.36582 1.47245 2.32986 2.84228 2.98366 3.05440 3.86581 4.05001 4.11434 4.12698 4.22074 4.29929 4.42448 4.59697 4.60753 4.71646 4.79081 4.88710 4.98418 5.04568 5.16204 5.20576 5.50164 5.52147 5.53836 5.61818 5.66397 5.81511 5.98446 6.26356 6.52636 6.68475 7.28944 8.84475 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.057383 B = 0.007330 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.833661 B = 3818.758774 C = 4005.590184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.017 3.983 3 Si 0.943 3.057 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.246 1.246 7 C -0.518 4.518 8 H 0.032 0.968 9 C 0.012 3.988 10 H 0.037 0.963 11 C -0.138 4.138 12 C 0.051 3.949 13 N -0.492 5.492 14 C 0.064 3.936 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.125 4.125 18 C -0.117 4.117 19 C -0.168 4.168 20 C 0.066 3.934 21 H 0.267 0.733 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.133 0.867 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.137 0.863 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.125 -7.854 -5.335 18.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.181 4.181 3 Si 0.768 3.232 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.169 1.169 7 C -0.556 4.556 8 H 0.051 0.949 9 C -0.007 4.007 10 H 0.055 0.945 11 C -0.177 4.177 12 C -0.075 4.075 13 N -0.213 5.213 14 C -0.030 4.030 15 C -0.128 4.128 16 C -0.130 4.130 17 C -0.143 4.143 18 C -0.135 4.135 19 C -0.188 4.188 20 C -0.060 4.060 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.151 0.849 27 H 0.172 0.828 28 H 0.170 0.830 29 H 0.155 0.845 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 16.355 -7.598 -4.934 18.697 hybrid contribution -1.224 0.684 -0.527 1.498 sum 15.131 -6.915 -5.461 17.510 Atomic orbital electron populations 1.70048 1.08235 1.28146 1.52454 1.25838 0.95380 1.02984 0.93883 0.85890 0.79358 0.78571 0.79400 1.18729 1.21956 1.16933 1.21177 0.90807 0.93075 1.50589 0.94920 1.19970 0.93484 0.92935 0.94341 0.94535 1.22795 0.96575 0.98894 0.99399 1.22886 0.98550 0.92735 0.93327 1.62469 1.24536 1.04696 1.29638 1.19373 0.95989 0.92750 0.94889 1.21221 0.94716 0.96377 1.00438 1.21455 1.00798 0.94707 0.96062 1.21524 0.94530 1.00806 0.97453 1.21297 0.97211 0.94985 1.00049 1.21775 1.00292 0.98339 0.98422 1.23090 0.86505 0.97802 0.98588 0.92439 0.92594 0.92072 0.93396 0.89137 0.84925 0.82763 0.82983 0.84471 0.87832 0.91046 0.94762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 2 C 0.02 0.96 5.46 84.65 0.46 1.43 16 3 Si 0.94 44.54 24.72 68.60 1.70 46.24 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.25 -10.85 6.38 99.48 0.63 -10.21 16 7 C -0.52 -29.90 9.00 25.60 0.23 -29.67 16 8 H 0.03 2.09 8.03 -2.91 -0.02 2.06 16 9 C 0.01 0.58 2.46 -10.33 -0.03 0.55 16 10 H 0.04 1.77 7.36 -2.39 -0.02 1.75 16 11 C -0.14 -5.81 4.69 31.47 0.15 -5.66 16 12 C 0.05 1.81 6.51 86.45 0.56 2.38 16 13 N -0.49 -17.99 5.28 -682.81 -3.60 -21.59 16 14 C 0.06 2.06 4.85 38.22 0.19 2.25 16 15 C -0.11 -2.87 9.97 22.40 0.22 -2.65 16 16 C -0.11 -2.28 10.04 22.25 0.22 -2.06 16 17 C -0.13 -2.48 10.04 22.29 0.22 -2.26 16 18 C -0.12 -2.82 10.04 22.25 0.22 -2.60 16 19 C -0.17 -5.19 7.90 22.40 0.18 -5.02 16 20 C 0.07 2.80 5.82 86.65 0.50 3.30 16 21 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 22 H 0.06 2.50 7.80 -2.38 -0.02 2.48 16 23 H 0.06 2.44 5.94 -2.39 -0.01 2.42 16 24 H 0.05 1.63 6.69 -2.39 -0.02 1.61 16 25 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 26 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 27 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 28 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.10 3.52 7.05 -2.91 -0.02 3.50 16 31 H 0.07 2.95 8.14 -2.39 -0.02 2.94 16 32 H 0.03 1.52 6.55 -2.39 -0.02 1.50 16 Total: -1.00 -65.56 257.57 2.55 -63.01 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.02 Total: 11.59 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 3.14 Total: -40.00 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -3.30 Total: -80.84 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.70 Total: 46.24 kcal Total: -65.56 2.55 -63.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084450141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.549 kcal (2) G-P(sol) polarization free energy of solvation -65.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds