Wall clock time and date at job start Mon Mar 30 2020 02:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37858 * 119.78945 * 2 1 4 4 C 1.38262 * 119.95141 * 180.02562 * 3 2 1 5 5 C 1.38099 * 119.89259 * 0.12820 * 4 3 2 6 6 C 1.38570 * 120.48351 * 359.95155 * 5 4 3 7 7 C 1.38419 * 119.86345 * 359.80243 * 6 5 4 8 8 N 1.39754 * 123.02885 * 180.75219 * 7 6 5 9 9 C 1.46431 * 112.90209 * 339.80030 * 8 7 6 10 10 C 1.53377 * 108.78998 * 53.37808 * 9 8 7 11 11 H 1.08999 * 109.76708 * 51.28929 * 10 9 8 12 12 C 1.50704 * 109.76500 * 172.06355 * 10 9 8 13 13 H 1.08008 * 119.99602 * 120.00249 * 12 10 9 14 14 C 1.37875 * 120.00265 * 300.00025 * 12 10 9 15 15 N 1.31522 * 119.99899 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99945 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47199 * 59.99984 * 16 14 12 18 18 H 1.48509 * 109.46803 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47158 * 299.99597 * 16 14 12 20 20 C 1.50805 * 118.13002 * 179.73881 * 6 5 4 21 21 H 1.08999 * 109.47320 * 270.02364 * 1 2 3 22 22 H 1.09001 * 109.47547 * 30.02464 * 1 2 3 23 23 H 1.09002 * 109.47095 * 150.02521 * 1 2 3 24 24 H 1.08007 * 120.02389 * 359.97438 * 3 2 1 25 25 H 1.08002 * 120.05512 * 180.15567 * 4 3 2 26 26 H 1.07999 * 119.76073 * 179.97438 * 5 4 3 27 27 H 1.00895 * 111.23145 * 214.24392 * 8 7 6 28 28 H 1.09002 * 109.61000 * 293.54253 * 9 8 7 29 29 H 1.09000 * 109.60338 * 173.21040 * 9 8 7 30 30 H 0.96994 * 119.99653 * 180.02562 * 15 14 12 31 31 H 1.08995 * 109.43821 * 44.32572 * 20 6 5 32 32 H 1.09003 * 109.43857 * 284.43772 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1919 1.1964 0.0000 4 6 3.5745 1.2003 -0.0005 5 6 4.2661 0.0050 -0.0037 6 6 3.5846 -1.2015 -0.0054 7 6 2.2004 -1.2112 0.0002 8 7 1.4470 -2.3882 0.0143 9 6 2.2041 -3.5550 -0.4435 10 6 3.4989 -3.6550 0.3724 11 1 3.2685 -3.6090 1.4368 12 6 4.2009 -4.9508 0.0575 13 1 5.1993 -4.9378 -0.3545 14 6 3.5689 -6.1528 0.2954 15 7 2.3534 -6.1686 0.7976 16 14 4.4394 -7.7590 -0.0943 17 1 5.6912 -7.8487 0.6993 18 1 3.5519 -8.8990 0.2494 19 1 4.7665 -7.8061 -1.5421 20 6 4.3928 -2.4746 -0.0150 21 1 -0.3634 0.0004 1.0276 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6488 2.1300 -0.0004 25 1 4.1128 2.1366 0.0020 26 1 5.3461 0.0105 -0.0046 27 1 0.5931 -2.2817 -0.5125 28 1 2.4455 -3.4426 -1.5005 29 1 1.6095 -4.4568 -0.2980 30 1 1.9089 -7.0142 0.9653 31 1 5.2116 -2.3899 0.6994 32 1 4.7985 -2.6393 -1.0132 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084768006.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:50 Heat of formation + Delta-G solvation = 11.382410 kcal Electronic energy + Delta-G solvation = -14404.276286 eV Core-core repulsion = 12135.591144 eV Total energy + Delta-G solvation = -2268.685141 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.66217 -35.93454 -33.84546 -32.53642 -30.04578 -29.29112 -26.37088 -25.04805 -23.53072 -21.65537 -20.50112 -18.43204 -16.88117 -16.03630 -15.43841 -14.54424 -14.38997 -14.14866 -13.35305 -13.13278 -12.69546 -12.47360 -12.44577 -12.06316 -11.86369 -11.60872 -10.96547 -10.94613 -10.78665 -10.45807 -10.34976 -9.93292 -9.41297 -9.13319 -9.00051 -8.39696 -7.99711 -6.90596 -6.05368 -4.13424 1.88454 2.04028 3.28887 3.33918 3.36366 4.26458 4.38134 4.83992 5.24554 5.27850 5.31932 5.50953 5.60683 5.86583 5.90289 6.03329 6.09579 6.29095 6.36613 6.39746 6.54672 6.69440 6.86302 6.94982 6.97504 7.01651 7.17519 7.41567 7.56733 7.80002 7.88301 8.11318 8.14088 8.38496 8.90992 9.52037 11.00165 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.049959 B = 0.008042 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.326828 B = 3480.712829 C = 3959.379185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.151 4.151 3 C -0.103 4.103 4 C -0.167 4.167 5 C -0.100 4.100 6 C -0.118 4.118 7 C 0.148 3.852 8 N -0.629 5.629 9 C 0.058 3.942 10 C 0.051 3.949 11 H 0.038 0.962 12 C -0.516 4.516 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.887 5.887 16 Si 0.894 3.106 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.073 4.073 21 H 0.066 0.934 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.344 0.656 28 H 0.015 0.985 29 H 0.115 0.885 30 H 0.262 0.738 31 H 0.060 0.940 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.682 10.251 -2.712 10.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.154 4.154 3 C -0.122 4.122 4 C -0.187 4.187 5 C -0.119 4.119 6 C -0.121 4.121 7 C 0.045 3.955 8 N -0.252 5.252 9 C -0.068 4.068 10 C 0.032 3.968 11 H 0.056 0.944 12 C -0.555 4.555 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.525 5.525 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.110 4.110 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.170 0.830 28 H 0.034 0.966 29 H 0.133 0.867 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.790 9.856 -2.039 10.222 hybrid contribution 0.422 -0.698 -0.909 1.221 sum -1.368 9.158 -2.947 9.717 Atomic orbital electron populations 1.20582 0.91807 1.01444 1.01900 1.19703 0.95553 0.92297 1.07861 1.20601 0.94149 0.96412 1.01031 1.20755 0.94155 0.97336 1.06460 1.20928 0.99182 0.91836 0.99975 1.19888 0.92226 0.96235 1.03760 1.18677 0.91680 0.89610 0.95497 1.56886 1.08840 1.03262 1.56206 1.22478 0.98260 0.90696 0.95380 1.18764 0.90092 0.91537 0.96361 0.94394 1.21114 1.01315 0.90258 1.42807 0.92363 1.25015 0.94989 0.99180 0.94804 1.69862 1.12488 1.26351 1.43812 0.86632 0.79562 0.82868 0.78806 1.20185 1.21234 1.20267 1.20721 0.97740 0.91840 1.00744 0.91564 0.92384 0.92153 0.87066 0.87146 0.86836 0.82968 0.96648 0.86680 0.92758 0.92153 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.68 36.01 0.35 -1.03 16 2 C -0.15 -2.56 5.90 -104.27 -0.62 -3.18 16 3 C -0.10 -1.60 9.67 -39.71 -0.38 -1.98 16 4 C -0.17 -2.61 10.05 -39.62 -0.40 -3.01 16 5 C -0.10 -1.75 9.63 -39.51 -0.38 -2.13 16 6 C -0.12 -2.38 5.74 -104.38 -0.60 -2.98 16 7 C 0.15 2.96 6.23 -83.68 -0.52 2.44 16 8 N -0.63 -13.06 6.34 -58.41 -0.37 -13.43 16 9 C 0.06 1.37 5.75 -3.88 -0.02 1.35 16 10 C 0.05 1.30 2.32 -91.55 -0.21 1.09 16 11 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 12 C -0.52 -14.00 8.55 -34.44 -0.29 -14.29 16 13 H 0.06 1.54 7.75 -52.48 -0.41 1.14 16 14 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 15 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 16 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.07 -1.60 5.10 -27.81 -0.14 -1.74 16 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.06 0.66 8.08 -51.93 -0.42 0.25 16 23 H 0.06 0.80 6.01 -51.93 -0.31 0.49 16 24 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 25 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.34 6.16 6.41 -39.29 -0.25 5.91 16 28 H 0.02 0.36 8.11 -51.93 -0.42 -0.06 16 29 H 0.12 3.00 5.95 -51.93 -0.31 2.69 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 LS Contribution 259.72 15.07 3.91 3.91 Total: -1.00 -28.41 259.72 -8.38 -36.78 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.21 Total: 5.01 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -3.32 Total: -23.88 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.26 Total: -37.69 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.41 -8.38 -36.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084768006.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.166 kcal (2) G-P(sol) polarization free energy of solvation -28.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds