Wall clock time and date at job start Mon Mar 30 2020 02:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37858 * 119.78945 * 2 1 4 4 C 1.38262 * 119.95141 * 180.02562 * 3 2 1 5 5 C 1.38099 * 119.89259 * 0.12820 * 4 3 2 6 6 C 1.38570 * 120.48351 * 359.95155 * 5 4 3 7 7 C 1.38419 * 119.86345 * 359.80243 * 6 5 4 8 8 N 1.39754 * 123.02885 * 180.75219 * 7 6 5 9 9 C 1.46431 * 112.90209 * 339.80030 * 8 7 6 10 10 C 1.53377 * 108.78998 * 53.37808 * 9 8 7 11 11 H 1.08999 * 109.76708 * 51.28929 * 10 9 8 12 12 C 1.50704 * 109.76500 * 172.06355 * 10 9 8 13 13 H 1.08008 * 119.99602 * 120.00249 * 12 10 9 14 14 C 1.37875 * 120.00265 * 300.00025 * 12 10 9 15 15 N 1.31522 * 119.99899 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99945 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47199 * 59.99984 * 16 14 12 18 18 H 1.48509 * 109.46803 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47158 * 299.99597 * 16 14 12 20 20 C 1.50805 * 118.13002 * 179.73881 * 6 5 4 21 21 H 1.08999 * 109.47320 * 270.02364 * 1 2 3 22 22 H 1.09001 * 109.47547 * 30.02464 * 1 2 3 23 23 H 1.09002 * 109.47095 * 150.02521 * 1 2 3 24 24 H 1.08007 * 120.02389 * 359.97438 * 3 2 1 25 25 H 1.08002 * 120.05512 * 180.15567 * 4 3 2 26 26 H 1.07999 * 119.76073 * 179.97438 * 5 4 3 27 27 H 1.00895 * 111.23145 * 214.24392 * 8 7 6 28 28 H 1.09002 * 109.61000 * 293.54253 * 9 8 7 29 29 H 1.09000 * 109.60338 * 173.21040 * 9 8 7 30 30 H 0.96994 * 119.99653 * 180.02562 * 15 14 12 31 31 H 1.08995 * 109.43821 * 44.32572 * 20 6 5 32 32 H 1.09003 * 109.43857 * 284.43772 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1919 1.1964 0.0000 4 6 3.5745 1.2003 -0.0005 5 6 4.2661 0.0050 -0.0037 6 6 3.5846 -1.2015 -0.0054 7 6 2.2004 -1.2112 0.0002 8 7 1.4470 -2.3882 0.0143 9 6 2.2041 -3.5550 -0.4435 10 6 3.4989 -3.6550 0.3724 11 1 3.2685 -3.6090 1.4368 12 6 4.2009 -4.9508 0.0575 13 1 5.1993 -4.9378 -0.3545 14 6 3.5689 -6.1528 0.2954 15 7 2.3534 -6.1686 0.7976 16 14 4.4394 -7.7590 -0.0943 17 1 5.6912 -7.8487 0.6993 18 1 3.5519 -8.8990 0.2494 19 1 4.7665 -7.8061 -1.5421 20 6 4.3928 -2.4746 -0.0150 21 1 -0.3634 0.0004 1.0276 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6488 2.1300 -0.0004 25 1 4.1128 2.1366 0.0020 26 1 5.3461 0.0105 -0.0046 27 1 0.5931 -2.2817 -0.5125 28 1 2.4455 -3.4426 -1.5005 29 1 1.6095 -4.4568 -0.2980 30 1 1.9089 -7.0142 0.9653 31 1 5.2116 -2.3899 0.6994 32 1 4.7985 -2.6393 -1.0132 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084768006.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:49 Heat of formation + Delta-G solvation = -4.780868 kcal Electronic energy + Delta-G solvation = -14404.977178 eV Core-core repulsion = 12135.591144 eV Total energy + Delta-G solvation = -2269.386034 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.12749 -37.55396 -35.42867 -34.34426 -31.62773 -30.87708 -27.63154 -26.95962 -25.25490 -23.30769 -21.86181 -20.12744 -18.66901 -17.79161 -17.00661 -16.30022 -15.99565 -15.59946 -14.83181 -14.53747 -14.42991 -14.05403 -13.99308 -13.58546 -13.18989 -13.15335 -12.77609 -12.58876 -12.38364 -12.11944 -11.88944 -11.72953 -11.15626 -10.97082 -10.88775 -10.42890 -9.34952 -8.41315 -8.13234 -6.29794 0.55383 0.67425 1.42125 1.43393 1.51436 2.41133 2.90729 3.10032 3.37091 3.99229 4.02563 4.24643 4.42963 4.46473 4.55970 4.63459 4.69925 4.80743 4.86251 4.91380 5.00177 5.14003 5.20716 5.38483 5.47870 5.54970 5.70554 5.73929 5.80939 5.89381 6.07479 6.28445 6.48652 6.62631 6.81395 7.39402 8.91330 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.049959 B = 0.008042 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.326828 B = 3480.712829 C = 3959.379185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.152 4.152 3 C -0.100 4.100 4 C -0.157 4.157 5 C -0.108 4.108 6 C -0.149 4.149 7 C 0.113 3.887 8 N -0.635 5.635 9 C 0.074 3.926 10 C 0.050 3.950 11 H -0.006 1.006 12 C -0.540 4.540 13 H 0.058 0.942 14 C 0.015 3.985 15 N -0.913 5.913 16 Si 0.960 3.040 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.064 4.064 21 H 0.069 0.931 22 H 0.087 0.913 23 H 0.058 0.942 24 H 0.150 0.850 25 H 0.148 0.852 26 H 0.130 0.870 27 H 0.356 0.644 28 H 0.010 0.990 29 H 0.088 0.912 30 H 0.263 0.737 31 H 0.059 0.941 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 12.257 -3.288 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.155 4.155 3 C -0.118 4.118 4 C -0.176 4.176 5 C -0.126 4.126 6 C -0.153 4.153 7 C 0.011 3.989 8 N -0.261 5.261 9 C -0.053 4.053 10 C 0.031 3.969 11 H 0.012 0.988 12 C -0.578 4.578 13 H 0.076 0.924 14 C -0.184 4.184 15 N -0.552 5.552 16 Si 0.785 3.215 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.194 1.194 20 C -0.101 4.101 21 H 0.088 0.912 22 H 0.106 0.894 23 H 0.077 0.923 24 H 0.168 0.832 25 H 0.165 0.835 26 H 0.148 0.852 27 H 0.184 0.816 28 H 0.028 0.972 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.731 11.892 -2.618 12.299 hybrid contribution 0.395 -1.184 -0.709 1.435 sum -1.337 10.708 -3.327 11.292 Atomic orbital electron populations 1.20649 0.89638 1.02882 1.02511 1.20090 0.97304 0.91636 1.06457 1.21096 0.94442 0.97219 0.99036 1.21213 0.94564 0.97919 1.03896 1.21150 1.00209 0.91533 0.99749 1.19917 0.92639 0.96368 1.06366 1.18929 0.91928 0.90244 0.97776 1.56794 1.09222 1.03043 1.57002 1.22032 0.97385 0.91200 0.94707 1.18648 0.91668 0.92668 0.93895 0.98782 1.21459 1.01602 0.91546 1.43221 0.92379 1.25811 0.95629 1.02511 0.94497 1.70009 1.13710 1.27110 1.44360 0.85587 0.78442 0.78607 0.78883 1.19691 1.20764 1.19406 1.20517 0.97367 0.91890 1.00352 0.91246 0.89381 0.92301 0.83233 0.83474 0.85235 0.81622 0.97157 0.89396 0.92734 0.92208 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.48 9.68 71.24 0.69 -1.79 16 2 C -0.15 -4.81 5.90 -19.63 -0.12 -4.92 16 3 C -0.10 -2.67 9.67 22.19 0.21 -2.45 16 4 C -0.16 -4.26 10.05 22.24 0.22 -4.04 16 5 C -0.11 -3.55 9.63 22.32 0.21 -3.34 16 6 C -0.15 -6.07 5.74 -19.71 -0.11 -6.18 16 7 C 0.11 4.49 6.23 38.24 0.24 4.73 16 8 N -0.64 -27.13 6.34 -338.72 -2.15 -29.28 16 9 C 0.07 3.68 5.75 86.52 0.50 4.18 16 10 C 0.05 2.66 2.32 -11.40 -0.03 2.64 16 11 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 12 C -0.54 -30.32 8.55 25.60 0.22 -30.10 16 13 H 0.06 3.17 7.75 -2.91 -0.02 3.14 16 14 C 0.01 0.83 5.29 84.65 0.45 1.27 16 15 N -0.91 -52.95 11.32 21.45 0.24 -52.71 16 16 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 C -0.06 -2.90 5.10 29.90 0.15 -2.74 16 21 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 22 H 0.09 1.65 8.08 -2.39 -0.02 1.63 16 23 H 0.06 1.47 6.01 -2.39 -0.01 1.45 16 24 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 25 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 26 H 0.13 3.73 8.06 -2.91 -0.02 3.70 16 27 H 0.36 12.98 6.41 -89.70 -0.58 12.40 16 28 H 0.01 0.50 8.11 -2.39 -0.02 0.48 16 29 H 0.09 4.83 5.95 -2.39 -0.01 4.81 16 30 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.06 2.63 8.08 -2.39 -0.02 2.61 16 Total: -1.00 -63.10 259.72 3.30 -59.80 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.54 Total: 19.47 kcal Atomic # 6 Polarization: -45.39 SS G_CDS: 2.64 Total: -42.75 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -1.90 Total: -81.98 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -63.10 3.30 -59.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084768006.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.022 kcal (2) G-P(sol) polarization free energy of solvation -63.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds