Wall clock time and date at job start Mon Mar 30 2020 02:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38304 * 120.04229 * 2 1 4 4 C 1.38125 * 120.15621 * 179.97438 * 3 2 1 5 5 C 1.38504 * 120.31085 * 0.02562 * 4 3 2 6 6 C 1.38607 * 119.56675 * 0.10152 * 5 4 3 7 7 C 1.38029 * 120.04358 * 179.97438 * 2 1 3 8 8 N 1.39918 * 120.84183 * 179.76358 * 6 5 4 9 9 C 1.46921 * 118.92322 * 13.37727 * 8 6 5 10 10 C 1.53439 * 107.84215 * 315.34710 * 9 8 6 11 11 H 1.08998 * 109.57425 * 303.45035 * 10 9 8 12 12 C 1.50696 * 109.57454 * 183.05663 * 10 9 8 13 13 H 1.08001 * 120.00156 * 239.99761 * 12 10 9 14 14 C 1.37882 * 119.99711 * 60.00641 * 12 10 9 15 15 N 1.31508 * 120.00219 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99635 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47447 * 90.00089 * 16 14 12 18 18 H 1.48503 * 109.47193 * 209.99573 * 16 14 12 19 19 H 1.48501 * 109.47620 * 329.99794 * 16 14 12 20 20 C 1.50593 * 118.92933 * 180.18231 * 5 4 3 21 21 H 1.09004 * 109.46881 * 90.00200 * 1 2 3 22 22 H 1.09005 * 109.47112 * 209.99280 * 1 2 3 23 23 H 1.08997 * 109.47091 * 329.99990 * 1 2 3 24 24 H 1.07998 * 119.92595 * 359.90202 * 3 2 1 25 25 H 1.07999 * 119.84787 * 180.02562 * 4 3 2 26 26 H 1.07997 * 119.98153 * 0.03264 * 7 2 1 27 27 H 0.97003 * 120.53531 * 193.38982 * 8 6 5 28 28 H 1.09002 * 109.79760 * 74.95295 * 9 8 6 29 29 H 1.09003 * 109.79277 * 195.74924 * 9 8 6 30 30 H 0.96998 * 120.00082 * 179.97438 * 15 14 12 31 31 H 1.09007 * 109.30235 * 320.79664 * 20 5 4 32 32 H 1.09002 * 109.29945 * 80.37930 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.1972 0.0000 4 6 3.5807 1.2000 0.0005 5 6 4.2821 0.0057 0.0005 6 6 3.5888 -1.1946 -0.0021 7 6 2.1981 -1.1948 0.0005 8 7 4.2704 -2.4166 -0.0072 9 6 5.7096 -2.4287 0.2879 10 6 6.3601 -1.2817 -0.4967 11 1 6.1409 -1.3952 -1.5584 12 6 7.8513 -1.3043 -0.2809 13 1 8.3461 -0.4517 0.1602 14 6 8.5840 -2.4136 -0.6467 15 7 7.9815 -3.4520 -1.1835 16 14 10.4326 -2.4414 -0.3798 17 1 10.7304 -2.9960 0.9652 18 1 11.0699 -3.2911 -1.4176 19 1 10.9674 -1.0592 -0.4748 20 6 5.7875 0.0450 0.0053 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5137 23 1 -0.3633 0.8900 0.5138 24 1 1.6589 2.1322 -0.0016 25 1 4.1163 2.1378 0.0010 26 1 1.6585 -2.1304 0.0004 27 1 3.8003 -3.2423 -0.2025 28 1 5.8687 -2.2820 1.3563 29 1 6.1420 -3.3800 -0.0224 30 1 8.4970 -4.2322 -1.4412 31 1 6.1289 0.8525 -0.6424 32 1 6.1399 0.2244 1.0211 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084768032.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:43 Heat of formation + Delta-G solvation = 7.312327 kcal Electronic energy + Delta-G solvation = -14212.422076 eV Core-core repulsion = 11943.560443 eV Total energy + Delta-G solvation = -2268.861633 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.32570 -36.06910 -33.22471 -32.52709 -30.57399 -28.85702 -26.90584 -24.43836 -23.41390 -21.95093 -20.86377 -18.38879 -16.68602 -16.09231 -15.23346 -14.77374 -14.42061 -13.74031 -13.46980 -13.28006 -12.79586 -12.54771 -12.34121 -12.05505 -11.87992 -11.65300 -11.00791 -10.97956 -10.76671 -10.42381 -10.27706 -9.94934 -9.29490 -9.23989 -8.92210 -8.44343 -7.91434 -6.55855 -6.09064 -4.15285 1.97946 2.24374 3.26426 3.33624 3.37075 4.33733 4.42066 4.44726 5.23003 5.29577 5.35574 5.62900 5.71275 5.79844 5.92822 6.02052 6.14844 6.35671 6.44998 6.47485 6.58642 6.88226 6.89308 7.01481 7.05001 7.16402 7.30242 7.50823 7.54611 7.81454 7.91214 8.15185 8.40896 8.64616 8.89034 9.50080 10.97150 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.065699 B = 0.007037 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.080659 B = 3978.028816 C = 4316.365095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.059 4.059 3 C -0.191 4.191 4 C -0.080 4.080 5 C -0.148 4.148 6 C 0.231 3.769 7 C -0.208 4.208 8 N -0.747 5.747 9 C 0.120 3.880 10 C 0.036 3.964 11 H 0.032 0.968 12 C -0.512 4.512 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.066 4.066 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.107 0.893 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.388 0.612 28 H 0.032 0.968 29 H 0.107 0.893 30 H 0.262 0.738 31 H 0.058 0.942 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.913 4.023 2.266 10.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.060 4.060 3 C -0.211 4.211 4 C -0.099 4.099 5 C -0.153 4.153 6 C 0.125 3.875 7 C -0.231 4.231 8 N -0.373 5.373 9 C -0.003 4.003 10 C 0.017 3.983 11 H 0.050 0.950 12 C -0.551 4.551 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.103 4.103 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.125 0.875 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.221 0.779 28 H 0.050 0.950 29 H 0.125 0.875 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.628 3.825 2.242 10.600 hybrid contribution 0.834 -0.437 0.011 0.942 sum -8.793 3.388 2.253 9.689 Atomic orbital electron populations 1.20714 0.92215 1.01915 1.01611 1.19447 0.94891 0.92905 0.98731 1.20526 0.94006 0.96617 1.09960 1.20827 0.93732 0.96877 0.98419 1.19712 0.96874 0.91327 1.07354 1.17726 0.90394 0.86997 0.92390 1.20440 0.92234 0.97422 1.13025 1.45259 1.10587 1.04612 1.76852 1.22051 0.76224 1.04739 0.97241 1.18962 0.94338 0.89151 0.95861 0.94978 1.21165 0.91625 1.01446 1.40814 0.92256 1.25006 0.98683 0.95627 0.94731 1.69836 1.35657 1.05585 1.42150 0.86540 0.85223 0.78094 0.77862 1.20619 1.21208 1.19823 1.20504 0.88616 1.00671 1.00556 0.91793 0.92186 0.92109 0.87463 0.86946 0.87185 0.77886 0.95002 0.87488 0.92818 0.92357 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 36.01 0.36 -0.92 16 2 C -0.06 -0.93 5.88 -104.67 -0.62 -1.55 16 3 C -0.19 -3.07 9.69 -39.60 -0.38 -3.45 16 4 C -0.08 -1.41 9.66 -39.52 -0.38 -1.79 16 5 C -0.15 -3.02 5.76 -104.44 -0.60 -3.62 16 6 C 0.23 4.63 6.48 -83.72 -0.54 4.09 16 7 C -0.21 -3.61 9.53 -39.35 -0.38 -3.99 16 8 N -0.75 -15.25 5.80 -58.08 -0.34 -15.59 16 9 C 0.12 2.83 6.19 -3.59 -0.02 2.81 16 10 C 0.04 0.90 2.28 -91.56 -0.21 0.70 16 11 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 12 C -0.51 -13.76 8.56 -34.44 -0.29 -14.06 16 13 H 0.06 1.57 7.75 -52.49 -0.41 1.16 16 14 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 15 N -0.89 -24.73 11.32 55.43 0.63 -24.10 16 16 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 C -0.07 -1.46 5.03 -27.95 -0.14 -1.60 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 23 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 24 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 25 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 26 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 27 H 0.39 6.97 8.86 -40.82 -0.36 6.61 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.11 2.72 6.05 -51.93 -0.31 2.40 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.06 1.23 8.12 -51.92 -0.42 0.81 16 32 H 0.06 1.27 8.11 -51.93 -0.42 0.85 16 LS Contribution 264.33 15.07 3.98 3.98 Total: -1.00 -27.89 264.33 -8.48 -36.37 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.44 Total: 5.44 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -3.30 Total: -21.85 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.29 Total: -39.69 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.89 -8.48 -36.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084768032.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.684 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds