Wall clock time and date at job start Mon Mar 30 2020 02:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38304 * 120.04229 * 2 1 4 4 C 1.38125 * 120.15621 * 179.97438 * 3 2 1 5 5 C 1.38504 * 120.31085 * 0.02562 * 4 3 2 6 6 C 1.38607 * 119.56675 * 0.10152 * 5 4 3 7 7 C 1.38029 * 120.04358 * 179.97438 * 2 1 3 8 8 N 1.39918 * 120.84183 * 179.76358 * 6 5 4 9 9 C 1.46921 * 118.92322 * 13.37727 * 8 6 5 10 10 C 1.53439 * 107.84215 * 315.34710 * 9 8 6 11 11 H 1.08998 * 109.57425 * 303.45035 * 10 9 8 12 12 C 1.50696 * 109.57454 * 183.05663 * 10 9 8 13 13 H 1.08001 * 120.00156 * 239.99761 * 12 10 9 14 14 C 1.37882 * 119.99711 * 60.00641 * 12 10 9 15 15 N 1.31508 * 120.00219 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99635 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47447 * 90.00089 * 16 14 12 18 18 H 1.48503 * 109.47193 * 209.99573 * 16 14 12 19 19 H 1.48501 * 109.47620 * 329.99794 * 16 14 12 20 20 C 1.50593 * 118.92933 * 180.18231 * 5 4 3 21 21 H 1.09004 * 109.46881 * 90.00200 * 1 2 3 22 22 H 1.09005 * 109.47112 * 209.99280 * 1 2 3 23 23 H 1.08997 * 109.47091 * 329.99990 * 1 2 3 24 24 H 1.07998 * 119.92595 * 359.90202 * 3 2 1 25 25 H 1.07999 * 119.84787 * 180.02562 * 4 3 2 26 26 H 1.07997 * 119.98153 * 0.03264 * 7 2 1 27 27 H 0.97003 * 120.53531 * 193.38982 * 8 6 5 28 28 H 1.09002 * 109.79760 * 74.95295 * 9 8 6 29 29 H 1.09003 * 109.79277 * 195.74924 * 9 8 6 30 30 H 0.96998 * 120.00082 * 179.97438 * 15 14 12 31 31 H 1.09007 * 109.30235 * 320.79664 * 20 5 4 32 32 H 1.09002 * 109.29945 * 80.37930 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1994 1.1972 0.0000 4 6 3.5807 1.2000 0.0005 5 6 4.2821 0.0057 0.0005 6 6 3.5888 -1.1946 -0.0021 7 6 2.1981 -1.1948 0.0005 8 7 4.2704 -2.4166 -0.0072 9 6 5.7096 -2.4287 0.2879 10 6 6.3601 -1.2817 -0.4967 11 1 6.1409 -1.3952 -1.5584 12 6 7.8513 -1.3043 -0.2809 13 1 8.3461 -0.4517 0.1602 14 6 8.5840 -2.4136 -0.6467 15 7 7.9815 -3.4520 -1.1835 16 14 10.4326 -2.4414 -0.3798 17 1 10.7304 -2.9960 0.9652 18 1 11.0699 -3.2911 -1.4176 19 1 10.9674 -1.0592 -0.4748 20 6 5.7875 0.0450 0.0053 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5137 23 1 -0.3633 0.8900 0.5138 24 1 1.6589 2.1322 -0.0016 25 1 4.1163 2.1378 0.0010 26 1 1.6585 -2.1304 0.0004 27 1 3.8003 -3.2423 -0.2025 28 1 5.8687 -2.2820 1.3563 29 1 6.1420 -3.3800 -0.0224 30 1 8.4970 -4.2322 -1.4412 31 1 6.1289 0.8525 -0.6424 32 1 6.1399 0.2244 1.0211 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084768032.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:43 Heat of formation + Delta-G solvation = -8.069668 kcal Electronic energy + Delta-G solvation = -14213.089089 eV Core-core repulsion = 11943.560443 eV Total energy + Delta-G solvation = -2269.528647 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.80258 -37.66894 -35.05253 -34.06557 -32.22565 -30.33589 -28.40716 -26.26256 -25.03564 -23.40532 -22.45875 -20.04858 -18.57011 -17.78594 -16.83299 -16.25499 -16.17319 -15.39256 -14.79481 -14.58331 -14.36502 -14.24419 -14.02405 -13.53024 -13.29234 -12.94186 -12.81979 -12.60183 -12.41418 -12.14975 -11.82632 -11.67993 -11.10589 -11.06644 -10.72920 -10.41318 -9.30745 -8.17955 -8.07347 -6.29221 0.60692 0.85783 1.42457 1.43285 1.53775 2.41248 2.82479 3.03118 3.16202 4.06343 4.12143 4.32881 4.45220 4.57953 4.60688 4.72958 4.78107 4.92861 4.94452 4.99544 5.08256 5.12498 5.27477 5.36000 5.53325 5.59622 5.78506 5.81293 5.85544 5.91804 6.11934 6.31057 6.63047 6.81163 7.12985 7.39604 8.90389 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.065699 B = 0.007037 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.080659 B = 3978.028816 C = 4316.365095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.056 4.056 3 C -0.186 4.186 4 C -0.083 4.083 5 C -0.183 4.183 6 C 0.203 3.797 7 C -0.210 4.210 8 N -0.750 5.750 9 C 0.137 3.863 10 C 0.035 3.965 11 H -0.008 1.008 12 C -0.535 4.535 13 H 0.057 0.943 14 C 0.015 3.985 15 N -0.918 5.918 16 Si 0.960 3.040 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.269 1.269 20 C -0.057 4.057 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.141 0.859 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.398 0.602 28 H 0.023 0.977 29 H 0.085 0.915 30 H 0.264 0.736 31 H 0.057 0.943 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.497 5.078 2.686 12.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.057 4.057 3 C -0.206 4.206 4 C -0.101 4.101 5 C -0.188 4.188 6 C 0.099 3.901 7 C -0.232 4.232 8 N -0.379 5.379 9 C 0.013 3.987 10 C 0.016 3.984 11 H 0.011 0.989 12 C -0.573 4.573 13 H 0.075 0.925 14 C -0.184 4.184 15 N -0.557 5.557 16 Si 0.785 3.215 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.094 4.094 21 H 0.096 0.904 22 H 0.089 0.911 23 H 0.099 0.901 24 H 0.159 0.841 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.233 0.767 28 H 0.041 0.959 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.245 4.899 2.663 12.552 hybrid contribution 1.203 -0.704 -0.145 1.402 sum -10.042 4.195 2.517 11.170 Atomic orbital electron populations 1.20788 0.88919 1.03530 1.02982 1.19982 0.97272 0.92065 0.96339 1.20957 0.93355 0.98274 1.07969 1.21066 0.94845 0.96499 0.97738 1.19743 0.95852 0.92898 1.10274 1.18030 0.91715 0.86420 0.93937 1.20718 0.91078 0.99195 1.12250 1.44998 1.09271 1.05664 1.77960 1.21566 0.78192 1.02812 0.96155 1.18869 0.94128 0.91636 0.93746 0.98936 1.21476 0.92895 1.01690 1.41276 0.92450 1.25778 1.03095 0.95171 0.94322 1.69965 1.37208 1.05987 1.42556 0.85520 0.79800 0.78188 0.77951 1.19827 1.20872 1.19325 1.20303 0.90424 0.98733 0.99919 0.90358 0.91064 0.90147 0.84135 0.85291 0.85347 0.76730 0.95901 0.89713 0.92709 0.92422 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.01 71.24 0.71 -1.31 16 2 C -0.06 -1.58 5.88 -19.90 -0.12 -1.69 16 3 C -0.19 -5.33 9.69 22.26 0.22 -5.11 16 4 C -0.08 -2.80 9.66 22.31 0.22 -2.59 16 5 C -0.18 -7.50 5.76 -19.75 -0.11 -7.61 16 6 C 0.20 8.13 6.48 38.14 0.25 8.37 16 7 C -0.21 -6.88 9.53 22.42 0.21 -6.67 16 8 N -0.75 -31.41 5.80 -337.67 -1.96 -33.37 16 9 C 0.14 6.73 6.19 86.45 0.54 7.27 16 10 C 0.04 1.86 2.28 -11.40 -0.03 1.83 16 11 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 12 C -0.54 -29.69 8.56 25.60 0.22 -29.48 16 13 H 0.06 3.12 7.75 -2.91 -0.02 3.09 16 14 C 0.02 0.84 5.30 84.66 0.45 1.28 16 15 N -0.92 -52.21 11.32 21.45 0.24 -51.97 16 16 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 20 C -0.06 -2.56 5.03 29.80 0.15 -2.41 16 21 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 22 H 0.07 1.24 8.09 -2.38 -0.02 1.22 16 23 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 24 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 25 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 26 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 27 H 0.40 14.58 8.86 -92.71 -0.82 13.76 16 28 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 4.51 6.05 -2.39 -0.01 4.50 16 30 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.06 2.52 8.12 -2.38 -0.02 2.50 16 32 H 0.05 2.41 8.11 -2.39 -0.02 2.39 16 Total: -1.00 -61.03 264.33 3.30 -57.73 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.29 Total: 20.63 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 2.70 Total: -38.11 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -1.72 Total: -85.34 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -61.03 3.30 -57.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084768032.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.658 kcal (2) G-P(sol) polarization free energy of solvation -61.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds