Wall clock time and date at job start Mon Mar 30 2020 02:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 120.00590 * 2 1 4 4 C 1.53002 * 109.47434 * 125.00030 * 3 2 1 5 5 H 1.09005 * 109.46523 * 55.00567 * 4 3 2 6 6 N 1.46891 * 109.47096 * 295.00533 * 4 3 2 7 7 C 1.50702 * 109.47222 * 175.00060 * 4 3 2 8 8 C 1.38654 * 119.87437 * 80.00347 * 7 4 3 9 9 C 1.38607 * 120.50170 * 179.97438 * 8 7 4 10 10 C 1.37638 * 120.24699 * 359.97438 * 9 8 7 11 11 C 1.40690 * 119.74564 * 0.02562 * 10 9 8 12 12 C 1.41396 * 120.24559 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99973 * 24.28451 * 12 11 10 14 14 C 1.39946 * 120.00274 * 204.28140 * 12 11 10 15 15 N 1.30824 * 119.99777 * 17.71723 * 14 12 11 16 16 Si 1.86807 * 120.00013 * 197.71232 * 14 12 11 17 17 H 1.48496 * 109.47043 * 60.00035 * 16 14 12 18 18 H 1.48498 * 109.46903 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47185 * 300.00232 * 16 14 12 20 20 C 1.37597 * 119.87395 * 259.72388 * 7 4 3 21 21 H 1.08005 * 119.99617 * 359.97438 * 1 2 3 22 22 H 1.07992 * 120.00527 * 180.02562 * 1 2 3 23 23 H 1.08005 * 119.99617 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.46871 * 5.00405 * 3 2 1 25 25 H 1.09006 * 109.47244 * 245.00542 * 3 2 1 26 26 H 1.00905 * 111.00355 * 299.99510 * 6 4 3 27 27 H 1.00900 * 111.00409 * 63.95138 * 6 4 3 28 28 H 1.08000 * 119.74839 * 359.95877 * 8 7 4 29 29 H 1.08000 * 119.87492 * 180.02562 * 9 8 7 30 30 H 1.08007 * 120.12854 * 180.02562 * 10 9 8 31 31 H 0.97003 * 119.99808 * 180.02562 * 15 14 12 32 32 H 1.08000 * 120.13118 * 0.02562 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0352 1.3329 1.1816 5 1 3.6828 0.4571 1.1402 6 7 2.2767 1.3221 2.4395 7 6 3.8750 2.5823 1.1120 8 6 3.3552 3.7893 1.5541 9 6 4.1163 4.9463 1.4966 10 6 5.3991 4.9083 0.9992 11 6 5.9369 3.6891 0.5478 12 6 7.2534 3.6381 0.0343 13 1 7.9767 4.3846 0.3275 14 6 7.6191 2.6202 -0.8537 15 7 6.6966 1.9336 -1.4775 16 14 9.4246 2.2419 -1.1485 17 1 10.0631 1.8469 0.1326 18 1 9.5442 1.1299 -2.1254 19 1 10.1016 3.4487 -1.6875 20 6 5.1566 2.5199 0.6153 21 1 -0.5400 0.9354 0.0004 22 1 -0.5400 -0.9352 0.0004 23 1 1.8499 -0.9354 -0.0004 24 1 1.3587 2.1316 0.0896 25 1 2.6214 1.4025 -0.9315 26 1 1.6683 2.1247 2.5019 27 1 1.7550 0.4643 2.5399 28 1 2.3496 3.8283 1.9461 29 1 3.7015 5.8810 1.8442 30 1 5.9907 5.8109 0.9557 31 1 6.9501 1.2278 -2.0928 32 1 5.5610 1.5779 0.2753 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104486565.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:25 Heat of formation + Delta-G solvation = 23.037086 kcal Electronic energy + Delta-G solvation = -14029.236602 eV Core-core repulsion = 11761.056846 eV Total energy + Delta-G solvation = -2268.179757 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.15990 -36.02317 -33.63370 -32.58763 -29.49305 -29.36839 -27.08743 -25.18000 -22.53637 -20.97899 -19.60674 -19.26386 -16.97346 -15.87564 -15.18118 -14.91966 -14.55794 -13.73370 -13.48410 -13.27665 -13.06233 -12.64156 -12.45189 -11.57895 -11.43441 -11.17977 -11.07518 -10.85516 -10.65364 -10.56064 -10.29596 -9.50633 -9.38585 -9.33010 -9.10589 -8.18728 -7.33311 -7.26627 -6.71439 -4.31065 2.37481 2.83277 3.04925 3.08637 3.11839 3.28254 3.96441 4.63920 5.04362 5.18340 5.30525 5.61008 5.76703 5.82878 5.94825 6.10130 6.22109 6.41727 6.48304 6.55557 6.75428 6.88200 6.95006 7.11285 7.30139 7.44092 7.57670 7.69163 7.91760 7.95214 8.09768 8.17620 8.34857 8.67259 8.94443 9.02620 10.23043 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.030026 B = 0.008464 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.313664 B = 3307.317354 C = 3983.699634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.141 4.141 3 C -0.125 4.125 4 C 0.145 3.855 5 H 0.078 0.922 6 N -0.837 5.837 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.098 4.098 10 C -0.227 4.227 11 C 0.109 3.891 12 C -0.466 4.466 13 H 0.076 0.924 14 C 0.077 3.923 15 N -0.796 5.796 16 Si 0.906 3.094 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.153 4.153 21 H 0.092 0.908 22 H 0.092 0.908 23 H 0.107 0.893 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.336 0.664 27 H 0.329 0.671 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.279 0.721 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.435 -3.573 1.165 7.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.159 4.159 3 C -0.165 4.165 4 C 0.034 3.966 5 H 0.096 0.904 6 N -0.365 5.365 7 C -0.064 4.064 8 C -0.243 4.243 9 C -0.117 4.117 10 C -0.246 4.246 11 C 0.107 3.893 12 C -0.495 4.495 13 H 0.094 0.906 14 C -0.140 4.140 15 N -0.422 5.422 16 Si 0.731 3.269 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.173 4.173 21 H 0.111 0.889 22 H 0.111 0.889 23 H 0.125 0.875 24 H 0.082 0.918 25 H 0.102 0.898 26 H 0.149 0.851 27 H 0.141 0.859 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.745 -3.715 1.343 6.972 hybrid contribution -0.096 -0.249 -0.942 0.979 sum -5.841 -3.963 0.401 7.070 Atomic orbital electron populations 1.23772 0.95941 1.01339 1.03667 1.23139 0.95952 0.99012 0.97754 1.21637 0.98886 0.94211 1.01721 1.20183 0.93078 0.97449 0.85868 0.90425 1.58972 1.33793 1.06811 1.36936 1.19219 0.94760 0.92549 0.99866 1.20025 0.99140 0.93137 1.12029 1.20481 0.94952 0.96159 1.00068 1.20976 0.95772 0.96909 1.10976 1.17562 0.92715 0.90381 0.88669 1.19519 0.96611 1.10103 1.23308 0.90618 1.25870 0.99421 0.94679 0.94017 1.69815 1.34938 1.17704 1.19749 0.86409 0.82904 0.78728 0.78907 1.18857 1.20412 1.19089 1.21144 0.93257 0.98942 1.03949 0.88922 0.88927 0.87549 0.91800 0.89793 0.85058 0.85907 0.89898 0.89641 0.89234 0.90988 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.53 14.32 29.01 0.42 -2.11 16 2 C -0.14 -1.93 8.69 -36.03 -0.31 -2.24 16 3 C -0.13 -2.08 5.28 -27.89 -0.15 -2.23 16 4 C 0.15 2.71 3.03 -68.87 -0.21 2.50 16 5 H 0.08 1.50 7.99 -51.93 -0.41 1.09 16 6 N -0.84 -13.69 9.02 -5.66 -0.05 -13.74 16 7 C -0.06 -1.45 4.95 -104.70 -0.52 -1.96 16 8 C -0.22 -4.99 9.30 -39.29 -0.37 -5.36 16 9 C -0.10 -2.27 10.02 -39.66 -0.40 -2.66 16 10 C -0.23 -5.71 9.80 -38.88 -0.38 -6.09 16 11 C 0.11 2.95 5.57 -106.83 -0.60 2.36 16 12 C -0.47 -12.53 9.05 -37.74 -0.34 -12.87 16 13 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 14 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 15 N -0.80 -20.54 10.95 55.55 0.61 -19.93 16 16 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 17 H -0.26 -5.48 7.11 56.52 0.40 -5.07 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 C -0.15 -3.97 8.31 -38.87 -0.32 -4.29 16 21 H 0.09 1.09 7.84 -52.48 -0.41 0.68 16 22 H 0.09 0.95 8.06 -52.49 -0.42 0.53 16 23 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 24 H 0.06 1.05 7.79 -51.93 -0.40 0.64 16 25 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 26 H 0.34 5.26 7.33 -39.29 -0.29 4.97 16 27 H 0.33 4.60 8.29 -39.29 -0.33 4.28 16 28 H 0.08 1.64 6.64 -52.49 -0.35 1.29 16 29 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 31 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 32 H 0.12 3.14 6.13 -52.49 -0.32 2.82 16 LS Contribution 272.95 15.07 4.11 4.11 Total: -1.00 -27.20 272.95 -7.80 -35.01 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -4.18 Total: 13.81 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: -3.26 Total: -33.10 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.56 Total: -33.67 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.20 -7.80 -35.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104486565.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.045 kcal (2) G-P(sol) polarization free energy of solvation -27.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds