Wall clock time and date at job start Mon Mar 30 2020 02:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 120.00590 * 2 1 4 4 C 1.53002 * 109.47434 * 125.00030 * 3 2 1 5 5 H 1.09005 * 109.46523 * 55.00567 * 4 3 2 6 6 N 1.46891 * 109.47096 * 295.00533 * 4 3 2 7 7 C 1.50702 * 109.47222 * 175.00060 * 4 3 2 8 8 C 1.38654 * 119.87437 * 80.00347 * 7 4 3 9 9 C 1.38607 * 120.50170 * 179.97438 * 8 7 4 10 10 C 1.37638 * 120.24699 * 359.97438 * 9 8 7 11 11 C 1.40690 * 119.74564 * 0.02562 * 10 9 8 12 12 C 1.41396 * 120.24559 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99973 * 24.28451 * 12 11 10 14 14 C 1.39946 * 120.00274 * 204.28140 * 12 11 10 15 15 N 1.30824 * 119.99777 * 17.71723 * 14 12 11 16 16 Si 1.86807 * 120.00013 * 197.71232 * 14 12 11 17 17 H 1.48496 * 109.47043 * 60.00035 * 16 14 12 18 18 H 1.48498 * 109.46903 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47185 * 300.00232 * 16 14 12 20 20 C 1.37597 * 119.87395 * 259.72388 * 7 4 3 21 21 H 1.08005 * 119.99617 * 359.97438 * 1 2 3 22 22 H 1.07992 * 120.00527 * 180.02562 * 1 2 3 23 23 H 1.08005 * 119.99617 * 180.02562 * 2 1 3 24 24 H 1.09003 * 109.46871 * 5.00405 * 3 2 1 25 25 H 1.09006 * 109.47244 * 245.00542 * 3 2 1 26 26 H 1.00905 * 111.00355 * 299.99510 * 6 4 3 27 27 H 1.00900 * 111.00409 * 63.95138 * 6 4 3 28 28 H 1.08000 * 119.74839 * 359.95877 * 8 7 4 29 29 H 1.08000 * 119.87492 * 180.02562 * 9 8 7 30 30 H 1.08007 * 120.12854 * 180.02562 * 10 9 8 31 31 H 0.97003 * 119.99808 * 180.02562 * 15 14 12 32 32 H 1.08000 * 120.13118 * 0.02562 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0352 1.3329 1.1816 5 1 3.6828 0.4571 1.1402 6 7 2.2767 1.3221 2.4395 7 6 3.8750 2.5823 1.1120 8 6 3.3552 3.7893 1.5541 9 6 4.1163 4.9463 1.4966 10 6 5.3991 4.9083 0.9992 11 6 5.9369 3.6891 0.5478 12 6 7.2534 3.6381 0.0343 13 1 7.9767 4.3846 0.3275 14 6 7.6191 2.6202 -0.8537 15 7 6.6966 1.9336 -1.4775 16 14 9.4246 2.2419 -1.1485 17 1 10.0631 1.8469 0.1326 18 1 9.5442 1.1299 -2.1254 19 1 10.1016 3.4487 -1.6875 20 6 5.1566 2.5199 0.6153 21 1 -0.5400 0.9354 0.0004 22 1 -0.5400 -0.9352 0.0004 23 1 1.8499 -0.9354 -0.0004 24 1 1.3587 2.1316 0.0896 25 1 2.6214 1.4025 -0.9315 26 1 1.6683 2.1247 2.5019 27 1 1.7550 0.4643 2.5399 28 1 2.3496 3.8283 1.9461 29 1 3.7015 5.8810 1.8442 30 1 5.9907 5.8109 0.9557 31 1 6.9501 1.2278 -2.0928 32 1 5.5610 1.5779 0.2753 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104486565.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:25 Heat of formation + Delta-G solvation = 7.404372 kcal Electronic energy + Delta-G solvation = -14029.914488 eV Core-core repulsion = 11761.056846 eV Total energy + Delta-G solvation = -2268.857642 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.88293 -37.55220 -35.44521 -33.90756 -31.38032 -31.08240 -28.43690 -27.11991 -24.09204 -22.85750 -21.03516 -20.70159 -18.87147 -17.53786 -16.63240 -16.44884 -16.19722 -15.44043 -15.05659 -14.67919 -14.41772 -14.22749 -14.19315 -13.41334 -12.92111 -12.85487 -12.79017 -12.50787 -12.29869 -11.99941 -11.94626 -11.35106 -11.15793 -10.99570 -10.39921 -9.57433 -9.26934 -9.09402 -8.60541 -6.31959 0.99940 1.14152 1.37418 1.38995 1.48387 1.55869 2.21490 2.75345 3.68285 3.80362 3.97251 4.13437 4.37239 4.43801 4.47650 4.59816 4.75672 4.84965 5.01751 5.07598 5.13749 5.17941 5.36919 5.57261 5.70261 5.72368 5.85867 6.06087 6.13667 6.19209 6.38712 6.43303 6.68984 6.77567 6.97529 7.08323 8.35501 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.030026 B = 0.008464 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.313664 B = 3307.317354 C = 3983.699634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.163 4.163 3 C -0.113 4.113 4 C 0.152 3.848 5 H 0.064 0.936 6 N -0.835 5.835 7 C -0.063 4.063 8 C -0.222 4.222 9 C -0.099 4.099 10 C -0.250 4.250 11 C 0.076 3.924 12 C -0.506 4.506 13 H 0.071 0.929 14 C 0.037 3.963 15 N -0.824 5.824 16 Si 0.979 3.021 17 H -0.262 1.262 18 H -0.266 1.266 19 H -0.260 1.260 20 C -0.181 4.181 21 H 0.098 0.902 22 H 0.117 0.883 23 H 0.111 0.889 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.343 0.657 27 H 0.346 0.654 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.287 0.713 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.907 -4.176 1.583 9.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.181 4.181 3 C -0.153 4.153 4 C 0.040 3.960 5 H 0.082 0.918 6 N -0.366 5.366 7 C -0.064 4.064 8 C -0.241 4.241 9 C -0.117 4.117 10 C -0.270 4.270 11 C 0.074 3.926 12 C -0.536 4.536 13 H 0.089 0.911 14 C -0.178 4.178 15 N -0.450 5.450 16 Si 0.800 3.200 17 H -0.187 1.187 18 H -0.190 1.190 19 H -0.184 1.184 20 C -0.201 4.201 21 H 0.117 0.883 22 H 0.135 0.865 23 H 0.129 0.871 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.157 0.843 27 H 0.160 0.840 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.245 -4.317 1.768 8.617 hybrid contribution 0.190 -0.033 -1.026 1.044 sum -7.055 -4.350 0.742 8.321 Atomic orbital electron populations 1.24008 0.95147 1.02779 0.99935 1.22931 0.96535 0.97578 1.01021 1.21425 0.98289 0.96351 0.99189 1.19981 0.93252 0.94740 0.87977 0.91785 1.58853 1.34289 1.08145 1.35336 1.19658 0.94078 0.94793 0.97844 1.20433 1.00384 0.92500 1.10795 1.20877 0.94065 0.97945 0.98853 1.21177 0.97153 0.96542 1.12133 1.17967 0.93496 0.91554 0.89619 1.19770 0.97083 1.11659 1.25050 0.91055 1.26703 1.04044 0.93904 0.93142 1.69873 1.37039 1.18059 1.20046 0.85306 0.76891 0.78889 0.78931 1.18679 1.19034 1.18433 1.21111 0.94938 0.97983 1.06087 0.88340 0.86511 0.87091 0.91370 0.92798 0.84259 0.83969 0.86644 0.86345 0.88942 0.90287 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.73 14.32 67.78 0.97 -2.76 16 2 C -0.16 -4.13 8.69 25.65 0.22 -3.91 16 3 C -0.11 -3.67 5.28 29.85 0.16 -3.51 16 4 C 0.15 5.59 3.03 44.17 0.13 5.73 16 5 H 0.06 2.52 7.99 -2.38 -0.02 2.50 16 6 N -0.84 -25.51 9.02 -171.81 -1.55 -27.06 16 7 C -0.06 -2.90 4.95 -19.92 -0.10 -2.99 16 8 C -0.22 -9.58 9.30 22.46 0.21 -9.37 16 9 C -0.10 -4.48 10.02 22.22 0.22 -4.25 16 10 C -0.25 -12.88 9.80 22.73 0.22 -12.66 16 11 C 0.08 4.27 5.57 -21.29 -0.12 4.15 16 12 C -0.51 -28.42 9.05 23.46 0.21 -28.21 16 13 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 14 C 0.04 1.91 5.14 85.26 0.44 2.35 16 15 N -0.82 -43.97 10.95 21.83 0.24 -43.73 16 16 Si 0.98 39.35 29.60 68.60 2.03 41.38 16 17 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 18 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 20 C -0.18 -9.76 8.31 22.73 0.19 -9.57 16 21 H 0.10 1.93 7.84 -2.91 -0.02 1.91 16 22 H 0.12 1.89 8.06 -2.91 -0.02 1.86 16 23 H 0.11 2.71 8.06 -2.91 -0.02 2.69 16 24 H 0.07 2.11 7.79 -2.39 -0.02 2.09 16 25 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.34 9.67 7.33 -89.69 -0.66 9.01 16 27 H 0.35 8.75 8.29 -89.69 -0.74 8.01 16 28 H 0.12 4.19 6.64 -2.91 -0.02 4.17 16 29 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 30 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 31 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 32 H 0.10 5.58 6.13 -2.91 -0.02 5.56 16 Total: -1.00 -60.29 272.95 3.20 -57.09 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.28 Total: 37.32 kcal Atomic # 6 Polarization: -67.77 SS G_CDS: 2.76 Total: -65.01 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -1.31 Total: -70.79 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -60.29 3.20 -57.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104486565.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.497 kcal (2) G-P(sol) polarization free energy of solvation -60.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds