Wall clock time and date at job start Mon Mar 30 2020 02:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 120.00098 * 2 1 4 4 C 1.52998 * 109.47121 * 124.99866 * 3 2 1 5 5 H 1.09000 * 109.47144 * 305.00267 * 4 3 2 6 6 N 1.46907 * 109.46735 * 65.00137 * 4 3 2 7 7 C 1.50694 * 109.46927 * 184.99845 * 4 3 2 8 8 C 1.37641 * 120.13110 * 265.02157 * 7 4 3 9 9 C 1.38610 * 120.25171 * 179.97438 * 8 7 4 10 10 C 1.38664 * 120.50044 * 0.02562 * 9 8 7 11 11 C 1.37598 * 120.24472 * 359.73888 * 10 9 8 12 12 C 1.40696 * 120.12917 * 85.00302 * 7 4 3 13 13 C 1.41404 * 120.24120 * 359.97438 * 12 7 4 14 14 H 1.07992 * 120.00108 * 334.69800 * 13 12 7 15 15 C 1.39946 * 120.00031 * 154.69294 * 13 12 7 16 16 N 1.30832 * 120.00122 * 342.98284 * 15 13 12 17 17 Si 1.86797 * 120.00107 * 162.98038 * 15 13 12 18 18 H 1.48497 * 109.47049 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47403 * 120.00072 * 17 15 13 20 20 H 1.48503 * 109.47061 * 240.00307 * 17 15 13 21 21 H 1.07998 * 119.99775 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.00101 * 179.97438 * 1 2 3 23 23 H 1.07998 * 119.99775 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47000 * 4.99773 * 3 2 1 25 25 H 1.09001 * 109.47026 * 245.00576 * 3 2 1 26 26 H 1.00900 * 110.99814 * 296.04443 * 6 4 3 27 27 H 1.00890 * 111.00108 * 59.99928 * 6 4 3 28 28 H 1.07995 * 119.87387 * 0.02562 * 8 7 4 29 29 H 1.08003 * 119.75275 * 179.97438 * 9 8 7 30 30 H 1.08000 * 119.87502 * 180.02562 * 10 9 8 31 31 H 1.08000 * 120.12353 * 180.27468 * 11 10 9 32 32 H 0.96994 * 119.99932 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.4883 1.1468 2.1060 6 7 4.0575 0.2940 0.9996 7 6 3.6991 2.6839 1.2541 8 6 4.9267 2.8828 0.6643 9 6 5.5395 4.1245 0.7290 10 6 4.9253 5.1790 1.3874 11 6 3.6958 5.0042 1.9800 12 6 3.0664 3.7468 1.9245 13 6 1.8047 3.5544 2.5333 14 1 1.1427 2.7817 2.1715 15 6 1.4138 4.3654 3.6048 16 7 2.3081 5.0616 4.2585 17 14 -0.3847 4.4539 4.1017 18 1 -1.1881 3.5793 3.2102 19 1 -0.5329 3.9986 5.5073 20 1 -0.8629 5.8547 3.9820 21 1 -0.5400 0.9353 -0.0004 22 1 -0.5400 -0.9353 -0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3587 2.1316 0.0895 25 1 2.6213 1.4026 -0.9314 26 1 3.6440 -0.6263 1.0124 27 1 4.5784 0.4444 0.1488 28 1 5.4140 2.0687 0.1485 29 1 6.5030 4.2715 0.2637 30 1 5.4116 6.1423 1.4312 31 1 3.2172 5.8281 2.4884 32 1 2.0371 5.6239 5.0008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104492907.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:27 Heat of formation + Delta-G solvation = 11.041320 kcal Electronic energy + Delta-G solvation = -14315.311920 eV Core-core repulsion = 12046.611988 eV Total energy + Delta-G solvation = -2268.699932 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.93051 -37.27592 -35.49480 -33.94358 -31.74609 -30.59522 -28.37529 -27.09179 -24.19420 -22.68427 -20.92190 -20.49734 -19.11816 -17.61096 -16.67393 -16.29890 -16.00312 -15.52368 -15.23942 -14.53309 -14.42084 -14.15001 -13.68624 -13.27428 -13.18350 -12.96600 -12.73185 -12.40706 -12.26603 -12.07293 -11.88077 -11.28217 -11.03302 -10.95308 -10.32317 -9.50395 -9.21610 -9.05094 -8.58303 -6.27101 1.00459 1.16703 1.37426 1.44501 1.50809 1.53317 2.21175 2.79116 3.71960 3.94133 4.00606 4.21972 4.43880 4.55124 4.57238 4.59057 4.78785 4.88251 5.01262 5.14219 5.25376 5.30573 5.42744 5.58415 5.72193 5.80272 5.94490 6.03602 6.19132 6.24054 6.41751 6.51020 6.73492 6.84267 7.01948 7.12513 8.38470 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.018681 B = 0.013960 C = 0.008605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.478532 B = 2005.219580 C = 3253.321777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C -0.114 4.114 4 C 0.170 3.830 5 H 0.058 0.942 6 N -0.841 5.841 7 C -0.192 4.192 8 C -0.085 4.085 9 C -0.245 4.245 10 C -0.118 4.118 11 C -0.195 4.195 12 C 0.085 3.915 13 C -0.485 4.485 14 H 0.079 0.921 15 C 0.034 3.966 16 N -0.829 5.829 17 Si 0.972 3.028 18 H -0.256 1.256 19 H -0.268 1.268 20 H -0.267 1.267 21 H 0.085 0.915 22 H 0.118 0.882 23 H 0.126 0.874 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.345 0.655 27 H 0.342 0.658 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 -6.679 -5.723 9.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.175 4.175 3 C -0.153 4.153 4 C 0.059 3.941 5 H 0.076 0.924 6 N -0.372 5.372 7 C -0.193 4.193 8 C -0.103 4.103 9 C -0.264 4.264 10 C -0.137 4.137 11 C -0.215 4.215 12 C 0.082 3.918 13 C -0.515 4.515 14 H 0.098 0.902 15 C -0.180 4.180 16 N -0.456 5.456 17 Si 0.793 3.207 18 H -0.179 1.179 19 H -0.193 1.193 20 H -0.192 1.192 21 H 0.103 0.897 22 H 0.136 0.864 23 H 0.143 0.857 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.159 0.841 27 H 0.156 0.844 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.284 -6.264 -4.836 8.236 hybrid contribution -1.106 0.363 -0.279 1.197 sum -3.389 -5.901 -5.114 8.512 Atomic orbital electron populations 1.23998 0.95998 1.02266 1.01061 1.23028 0.96397 0.98030 1.00048 1.21429 0.99034 0.95884 0.98998 1.19643 0.89728 0.88609 0.96151 0.92396 1.58892 1.28533 1.05117 1.44700 1.19892 0.96925 0.94572 1.07951 1.20635 0.94623 0.96160 0.98873 1.20765 1.01833 0.94553 1.09215 1.20941 0.95734 0.98300 0.98696 1.21281 0.97411 0.97720 1.05066 1.17773 0.92944 0.90859 0.90194 1.19774 1.01591 1.16238 1.13910 0.90250 1.26714 1.03198 0.93063 0.95030 1.69912 1.36787 1.22515 1.16378 0.85309 0.77540 0.79167 0.78671 1.17905 1.19347 1.19203 0.89674 0.86383 0.85661 0.93045 0.91300 0.84120 0.84410 0.86255 0.86827 0.87870 0.88592 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.13 14.32 67.78 0.97 -4.16 16 2 C -0.16 -4.33 9.09 25.64 0.23 -4.09 16 3 C -0.11 -3.92 5.14 29.85 0.15 -3.76 16 4 C 0.17 6.70 2.37 44.17 0.10 6.80 16 5 H 0.06 2.61 7.05 -2.39 -0.02 2.59 16 6 N -0.84 -26.99 8.79 -171.80 -1.51 -28.50 16 7 C -0.19 -9.05 5.11 -19.41 -0.10 -9.15 16 8 C -0.08 -3.70 9.26 22.22 0.21 -3.49 16 9 C -0.24 -10.86 10.05 22.46 0.23 -10.63 16 10 C -0.12 -5.72 10.02 22.22 0.22 -5.50 16 11 C -0.20 -10.60 8.69 22.73 0.20 -10.40 16 12 C 0.08 4.57 5.56 -21.29 -0.12 4.45 16 13 C -0.49 -25.86 8.10 23.46 0.19 -25.67 16 14 H 0.08 4.07 6.16 -2.91 -0.02 4.05 16 15 C 0.03 1.74 5.15 85.26 0.44 2.18 16 16 N -0.83 -44.56 10.98 21.83 0.24 -44.32 16 17 Si 0.97 38.91 29.59 68.60 2.03 40.94 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 19 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 21 H 0.08 2.41 7.84 -2.91 -0.02 2.39 16 22 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 23 H 0.13 2.81 7.19 -2.91 -0.02 2.79 16 24 H 0.05 2.03 7.06 -2.39 -0.02 2.01 16 25 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.34 9.05 7.75 -89.69 -0.70 8.36 16 27 H 0.34 9.80 7.21 -89.70 -0.65 9.15 16 28 H 0.12 4.40 6.28 -2.91 -0.02 4.38 16 29 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 30 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 31 H 0.10 5.47 6.21 -2.91 -0.02 5.46 16 32 H 0.28 13.88 8.30 -92.71 -0.77 13.11 16 Total: -1.00 -59.49 266.92 3.27 -56.22 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -0.21 Total: 39.08 kcal Atomic # 6 Polarization: -66.15 SS G_CDS: 2.72 Total: -63.43 kcal Atomic # 7 Polarization: -71.54 SS G_CDS: -1.27 Total: -72.82 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -59.49 3.27 -56.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104492907.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.264 kcal (2) G-P(sol) polarization free energy of solvation -59.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds