Wall clock time and date at job start Mon Mar 30 2020 02:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86799 * 120.00383 * 2 1 4 4 H 1.48500 * 109.47204 * 270.00191 * 3 2 1 5 5 H 1.48502 * 109.46752 * 30.00032 * 3 2 1 6 6 H 1.48498 * 109.47248 * 149.99967 * 3 2 1 7 7 C 1.39952 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99759 * 195.02256 * 7 2 1 9 9 C 1.41389 * 120.00018 * 15.02115 * 7 2 1 10 10 C 1.40734 * 120.24472 * 25.73778 * 9 7 2 11 11 C 1.37599 * 119.74343 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.25259 * 0.02562 * 11 10 9 13 13 C 1.38617 * 120.49710 * 359.72164 * 12 11 10 14 14 C 1.37635 * 120.24889 * 0.55327 * 13 12 11 15 15 C 1.50705 * 120.12697 * 179.72197 * 14 13 12 16 16 H 1.09005 * 109.46788 * 144.72700 * 15 14 13 17 17 N 1.46899 * 109.47087 * 24.72849 * 15 14 13 18 18 C 1.52994 * 109.47060 * 264.72792 * 15 14 13 19 19 C 1.53008 * 117.49860 * 248.61984 * 18 15 14 20 20 C 1.52996 * 59.99929 * 252.51172 * 19 18 15 21 21 H 0.97002 * 119.99769 * 359.97438 * 1 2 3 22 22 H 1.07994 * 120.12731 * 0.04505 * 10 9 7 23 23 H 1.08007 * 119.87189 * 179.97438 * 11 10 9 24 24 H 1.07997 * 119.75577 * 180.02562 * 12 11 10 25 25 H 1.08003 * 119.87404 * 180.30705 * 13 12 11 26 26 H 1.00890 * 111.00074 * 300.00062 * 17 15 14 27 27 H 1.00906 * 110.99482 * 63.95175 * 17 15 14 28 28 H 1.08994 * 115.55420 * 34.33350 * 18 15 14 29 29 H 1.09000 * 117.49676 * 0.02562 * 19 18 15 30 30 H 1.09002 * 117.49187 * 145.02214 * 19 18 15 31 31 H 1.09002 * 117.50408 * 252.50736 * 20 19 18 32 32 H 1.09003 * 117.49879 * 107.49131 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4400 0.7000 7 6 2.0079 -1.2121 -0.0005 8 1 3.0603 -1.2282 0.2419 9 6 1.3371 -2.4154 -0.3184 10 6 0.1871 -2.3931 -1.1294 11 6 -0.4579 -3.5703 -1.4318 12 6 0.0207 -4.7752 -0.9405 13 6 1.1555 -4.8097 -0.1452 14 6 1.8135 -3.6440 0.1748 15 6 3.0434 -3.6840 1.0449 16 1 3.7461 -2.9183 0.7161 17 7 3.6751 -5.0060 0.9393 18 6 2.6478 -3.4225 2.4995 19 6 3.1048 -2.1054 3.1300 20 6 3.7640 -3.4219 3.5459 21 1 -0.4850 0.8401 0.0004 22 1 -0.1875 -1.4556 -1.5130 23 1 -1.3409 -3.5555 -2.0537 24 1 -0.4916 -5.6945 -1.1833 25 1 1.5224 -5.7545 0.2280 26 1 3.0433 -5.7335 1.2385 27 1 4.0035 -5.1759 0.0004 28 1 1.6763 -3.8144 2.8002 29 1 3.6869 -1.4251 2.5083 30 1 2.4335 -1.6305 3.8456 31 1 3.5266 -3.8132 4.5352 32 1 4.7801 -3.6079 3.1981 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104503338.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:33 Heat of formation + Delta-G solvation = 35.155367 kcal Electronic energy + Delta-G solvation = -14529.476100 eV Core-core repulsion = 12261.821832 eV Total energy + Delta-G solvation = -2267.654268 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.40749 -36.38300 -33.76452 -32.96648 -29.87640 -28.67933 -25.46138 -24.42501 -21.64081 -20.95534 -20.46422 -18.94083 -17.25524 -15.70016 -15.22072 -14.90478 -14.57597 -13.83333 -13.49298 -13.10198 -12.58975 -12.49142 -11.68890 -11.63681 -11.35614 -11.11426 -10.88279 -10.74939 -10.43565 -10.29034 -9.75921 -9.58479 -9.39846 -9.34210 -9.18747 -8.03683 -7.37167 -7.35335 -6.73691 -4.35068 2.76696 2.94780 3.06939 3.09622 3.22133 3.92694 4.54190 4.64579 5.29691 5.40581 5.69434 5.73340 5.84140 6.11339 6.20078 6.26343 6.37309 6.42891 6.50702 6.58600 6.76818 6.80639 6.94622 7.13875 7.24125 7.33667 7.60295 7.73092 7.88864 8.05606 8.07073 8.08772 8.29801 8.62240 8.89794 8.96631 10.20276 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.014399 C = 0.009407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.042109 B = 1944.081166 C = 2975.791132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.077 3.923 3 Si 0.902 3.098 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.451 4.451 8 H 0.079 0.921 9 C 0.121 3.879 10 C -0.162 4.162 11 C -0.109 4.109 12 C -0.241 4.241 13 C -0.096 4.096 14 C -0.223 4.223 15 C 0.183 3.817 16 H 0.079 0.921 17 N -0.844 5.844 18 C -0.117 4.117 19 C -0.165 4.165 20 C -0.181 4.181 21 H 0.279 0.721 22 H 0.119 0.881 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.332 0.668 27 H 0.334 0.666 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.557 -2.338 2.103 4.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.480 4.480 8 H 0.097 0.903 9 C 0.118 3.882 10 C -0.181 4.181 11 C -0.128 4.128 12 C -0.260 4.260 13 C -0.115 4.115 14 C -0.227 4.227 15 C 0.072 3.928 16 H 0.096 0.904 17 N -0.371 5.371 18 C -0.136 4.136 19 C -0.202 4.202 20 C -0.218 4.218 21 H 0.090 0.910 22 H 0.137 0.863 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.144 0.856 27 H 0.146 0.854 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.901 -1.892 2.667 5.090 hybrid contribution -0.763 0.602 -0.691 1.193 sum 3.137 -1.290 1.977 3.926 Atomic orbital electron populations 1.69815 1.07497 1.28976 1.35897 1.25858 0.94678 1.01081 0.92401 0.86395 0.80622 0.80998 0.79265 1.19415 1.20361 1.18506 1.19511 0.96927 0.90623 1.40990 0.90345 1.17409 0.91081 0.91557 0.88124 1.21394 0.98993 0.96656 1.01083 1.20698 0.98571 0.93515 0.99972 1.20314 1.00920 0.96203 1.08601 1.20284 0.96159 0.95886 0.99148 1.20368 1.02231 0.93897 1.06163 1.19513 0.92242 0.90031 0.91008 0.90354 1.59150 1.43741 1.04417 1.29771 1.22041 0.97278 1.01112 0.93176 1.22803 1.03409 0.90830 1.03176 1.22813 0.98460 1.01975 0.98599 0.91020 0.86328 0.89662 0.89802 0.89734 0.85590 0.85421 0.89153 0.88898 0.89818 0.90275 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.29 10.88 55.55 0.60 -19.69 16 2 C 0.08 1.88 5.19 -17.34 -0.09 1.79 16 3 Si 0.90 18.46 29.59 -169.99 -5.03 13.43 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.37 8.47 -37.74 -0.32 -11.69 16 8 H 0.08 1.92 6.20 -52.48 -0.33 1.59 16 9 C 0.12 3.11 5.57 -106.83 -0.59 2.52 16 10 C -0.16 -4.18 8.68 -38.87 -0.34 -4.52 16 11 C -0.11 -2.59 10.02 -39.66 -0.40 -2.98 16 12 C -0.24 -5.42 10.05 -39.29 -0.39 -5.82 16 13 C -0.10 -2.11 9.26 -39.66 -0.37 -2.47 16 14 C -0.22 -5.14 5.09 -103.91 -0.53 -5.67 16 15 C 0.18 3.67 2.70 -68.87 -0.19 3.48 16 16 H 0.08 1.69 6.24 -51.93 -0.32 1.36 16 17 N -0.84 -14.42 8.70 -5.65 -0.05 -14.47 16 18 C -0.12 -2.26 5.32 -90.62 -0.48 -2.75 16 19 C -0.16 -3.02 10.18 -26.73 -0.27 -3.29 16 20 C -0.18 -3.00 10.12 -26.73 -0.27 -3.27 16 21 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 22 H 0.12 3.17 6.15 -52.49 -0.32 2.85 16 23 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 24 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 25 H 0.08 1.62 6.28 -52.48 -0.33 1.29 16 26 H 0.33 5.41 7.22 -39.30 -0.28 5.13 16 27 H 0.33 5.43 9.06 -39.29 -0.36 5.07 16 28 H 0.09 1.85 8.11 -51.93 -0.42 1.43 16 29 H 0.09 1.76 7.90 -51.93 -0.41 1.35 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 267.12 15.07 4.03 4.03 Total: -1.00 -25.99 267.12 -8.71 -34.70 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -4.02 Total: 16.66 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: -4.24 Total: -34.66 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.55 Total: -34.15 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -25.99 -8.71 -34.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104503338.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.856 kcal (2) G-P(sol) polarization free energy of solvation -25.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds