Wall clock time and date at job start Mon Mar 30 2020 02:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86799 * 120.00383 * 2 1 4 4 H 1.48500 * 109.47204 * 270.00191 * 3 2 1 5 5 H 1.48502 * 109.46752 * 30.00032 * 3 2 1 6 6 H 1.48498 * 109.47248 * 149.99967 * 3 2 1 7 7 C 1.39952 * 119.99655 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99759 * 195.02256 * 7 2 1 9 9 C 1.41389 * 120.00018 * 15.02115 * 7 2 1 10 10 C 1.40734 * 120.24472 * 25.73778 * 9 7 2 11 11 C 1.37599 * 119.74343 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.25259 * 0.02562 * 11 10 9 13 13 C 1.38617 * 120.49710 * 359.72164 * 12 11 10 14 14 C 1.37635 * 120.24889 * 0.55327 * 13 12 11 15 15 C 1.50705 * 120.12697 * 179.72197 * 14 13 12 16 16 H 1.09005 * 109.46788 * 144.72700 * 15 14 13 17 17 N 1.46899 * 109.47087 * 24.72849 * 15 14 13 18 18 C 1.52994 * 109.47060 * 264.72792 * 15 14 13 19 19 C 1.53008 * 117.49860 * 248.61984 * 18 15 14 20 20 C 1.52996 * 59.99929 * 252.51172 * 19 18 15 21 21 H 0.97002 * 119.99769 * 359.97438 * 1 2 3 22 22 H 1.07994 * 120.12731 * 0.04505 * 10 9 7 23 23 H 1.08007 * 119.87189 * 179.97438 * 11 10 9 24 24 H 1.07997 * 119.75577 * 180.02562 * 12 11 10 25 25 H 1.08003 * 119.87404 * 180.30705 * 13 12 11 26 26 H 1.00890 * 111.00074 * 300.00062 * 17 15 14 27 27 H 1.00906 * 110.99482 * 63.95175 * 17 15 14 28 28 H 1.08994 * 115.55420 * 34.33350 * 18 15 14 29 29 H 1.09000 * 117.49676 * 0.02562 * 19 18 15 30 30 H 1.09002 * 117.49187 * 145.02214 * 19 18 15 31 31 H 1.09002 * 117.50408 * 252.50736 * 20 19 18 32 32 H 1.09003 * 117.49879 * 107.49131 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4400 0.7000 7 6 2.0079 -1.2121 -0.0005 8 1 3.0603 -1.2282 0.2419 9 6 1.3371 -2.4154 -0.3184 10 6 0.1871 -2.3931 -1.1294 11 6 -0.4579 -3.5703 -1.4318 12 6 0.0207 -4.7752 -0.9405 13 6 1.1555 -4.8097 -0.1452 14 6 1.8135 -3.6440 0.1748 15 6 3.0434 -3.6840 1.0449 16 1 3.7461 -2.9183 0.7161 17 7 3.6751 -5.0060 0.9393 18 6 2.6478 -3.4225 2.4995 19 6 3.1048 -2.1054 3.1300 20 6 3.7640 -3.4219 3.5459 21 1 -0.4850 0.8401 0.0004 22 1 -0.1875 -1.4556 -1.5130 23 1 -1.3409 -3.5555 -2.0537 24 1 -0.4916 -5.6945 -1.1833 25 1 1.5224 -5.7545 0.2280 26 1 3.0433 -5.7335 1.2385 27 1 4.0035 -5.1759 0.0004 28 1 1.6763 -3.8144 2.8002 29 1 3.6869 -1.4251 2.5083 30 1 2.4335 -1.6305 3.8456 31 1 3.5266 -3.8132 4.5352 32 1 4.7801 -3.6079 3.1981 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104503338.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:32 Heat of formation + Delta-G solvation = 21.178189 kcal Electronic energy + Delta-G solvation = -14530.082196 eV Core-core repulsion = 12261.821832 eV Total energy + Delta-G solvation = -2268.260364 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.10266 -37.97765 -35.57108 -34.53779 -31.69947 -30.41987 -27.26285 -26.07172 -23.07037 -22.72691 -22.15994 -20.59184 -19.10012 -17.45676 -16.69813 -16.54881 -16.18211 -15.49089 -15.22952 -14.62727 -14.32528 -14.19918 -13.44031 -13.30663 -13.08667 -12.79281 -12.55262 -12.24633 -12.10909 -11.89192 -11.47805 -11.27138 -11.05553 -10.95715 -10.81833 -9.54884 -9.24123 -9.15635 -8.56808 -6.25769 0.98896 1.11187 1.38395 1.49422 1.52911 2.21400 2.79697 3.11619 3.68333 3.86967 4.10207 4.22082 4.34214 4.44942 4.54826 4.70259 4.75019 4.91043 4.95277 5.03033 5.17172 5.23603 5.35816 5.41578 5.47868 5.54118 5.77624 6.03342 6.09603 6.20497 6.33686 6.48470 6.73957 6.75362 7.02309 7.10158 8.39254 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.014399 C = 0.009407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.042109 B = 1944.081166 C = 2975.791132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.037 3.963 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.470 4.470 8 H 0.078 0.922 9 C 0.090 3.910 10 C -0.193 4.193 11 C -0.119 4.119 12 C -0.243 4.243 13 C -0.100 4.100 14 C -0.226 4.226 15 C 0.193 3.807 16 H 0.061 0.939 17 N -0.830 5.830 18 C -0.137 4.137 19 C -0.175 4.175 20 C -0.147 4.147 21 H 0.283 0.717 22 H 0.098 0.902 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.117 0.883 26 H 0.340 0.660 27 H 0.341 0.659 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.610 -3.333 2.909 6.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.500 4.500 8 H 0.096 0.904 9 C 0.087 3.913 10 C -0.213 4.213 11 C -0.138 4.138 12 C -0.262 4.262 13 C -0.118 4.118 14 C -0.229 4.229 15 C 0.081 3.919 16 H 0.079 0.921 17 N -0.358 5.358 18 C -0.156 4.156 19 C -0.213 4.213 20 C -0.184 4.184 21 H 0.094 0.906 22 H 0.116 0.884 23 H 0.120 0.880 24 H 0.131 0.869 25 H 0.135 0.865 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.957 -2.910 3.471 6.715 hybrid contribution -1.126 0.788 -0.956 1.674 sum 3.832 -2.123 2.515 5.051 Atomic orbital electron populations 1.69890 1.08896 1.29966 1.36968 1.26617 0.95309 1.04077 0.91662 0.85407 0.79472 0.76906 0.79282 1.19142 1.19740 1.17827 1.19653 0.96961 0.91359 1.41997 0.90402 1.17787 0.91632 0.93031 0.88865 1.21383 1.00367 0.96767 1.02784 1.20956 0.99076 0.93483 1.00235 1.20711 1.01015 0.96722 1.07734 1.20658 0.95777 0.96873 0.98501 1.20791 1.03008 0.93430 1.05676 1.19310 0.90606 0.91009 0.90963 0.92099 1.59091 1.43175 1.03260 1.30315 1.21944 0.97903 1.02307 0.93431 1.22814 1.03964 0.91155 1.03367 1.22849 0.97610 0.99416 0.98537 0.90621 0.88360 0.87986 0.86943 0.86492 0.84683 0.84677 0.90500 0.89969 0.89521 0.87960 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.61 10.88 21.83 0.24 -43.37 16 2 C 0.04 1.86 5.19 85.26 0.44 2.30 16 3 Si 0.97 38.26 29.59 68.60 2.03 40.29 16 4 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 7 C -0.47 -24.25 8.47 23.46 0.20 -24.05 16 8 H 0.08 3.89 6.20 -2.91 -0.02 3.88 16 9 C 0.09 4.69 5.57 -21.29 -0.12 4.57 16 10 C -0.19 -10.28 8.68 22.73 0.20 -10.08 16 11 C -0.12 -5.64 10.02 22.22 0.22 -5.42 16 12 C -0.24 -10.48 10.05 22.46 0.23 -10.26 16 13 C -0.10 -4.18 9.26 22.22 0.21 -3.98 16 14 C -0.23 -10.29 5.09 -19.40 -0.10 -10.39 16 15 C 0.19 7.53 2.70 44.17 0.12 7.65 16 16 H 0.06 2.61 6.24 -2.38 -0.01 2.59 16 17 N -0.83 -26.36 8.70 -171.80 -1.50 -27.86 16 18 C -0.14 -5.12 5.32 -10.79 -0.06 -5.18 16 19 C -0.18 -6.26 10.18 30.60 0.31 -5.95 16 20 C -0.15 -4.47 10.12 30.59 0.31 -4.16 16 21 H 0.28 13.64 8.30 -92.71 -0.77 12.87 16 22 H 0.10 5.52 6.15 -2.91 -0.02 5.50 16 23 H 0.10 4.34 8.06 -2.91 -0.02 4.31 16 24 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 25 H 0.12 4.08 6.28 -2.91 -0.02 4.06 16 26 H 0.34 10.01 7.22 -89.70 -0.65 9.36 16 27 H 0.34 10.25 9.06 -89.69 -0.81 9.43 16 28 H 0.08 3.07 8.11 -2.39 -0.02 3.05 16 29 H 0.08 3.09 7.90 -2.39 -0.02 3.08 16 30 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 31 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.10 2.89 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -55.86 267.12 2.41 -53.45 By element: Atomic # 1 Polarization: 42.76 SS G_CDS: -0.32 Total: 42.43 kcal Atomic # 6 Polarization: -66.90 SS G_CDS: 1.96 Total: -64.95 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -1.26 Total: -71.23 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -55.86 2.41 -53.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104503338.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.633 kcal (2) G-P(sol) polarization free energy of solvation -55.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds