Wall clock time and date at job start Mon Mar 30 2020 02:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 120.00149 * 2 1 4 4 C 1.52997 * 109.47393 * 124.99703 * 3 2 1 5 5 H 1.09000 * 109.47051 * 55.00052 * 4 3 2 6 6 N 1.46901 * 109.47320 * 295.00236 * 4 3 2 7 7 C 1.50699 * 109.47322 * 174.99849 * 4 3 2 8 8 C 1.37641 * 120.12380 * 100.00307 * 7 4 3 9 9 C 1.38616 * 120.24735 * 179.70451 * 8 7 4 10 10 C 1.38654 * 120.49924 * 0.02562 * 9 8 7 11 11 C 1.37601 * 120.25303 * 0.02562 * 10 9 8 12 12 C 1.40692 * 120.12907 * 279.73068 * 7 4 3 13 13 C 1.41402 * 120.24317 * 0.24417 * 12 7 4 14 14 H 1.07995 * 120.00066 * 329.63294 * 13 12 7 15 15 C 1.39955 * 119.99516 * 149.62108 * 13 12 7 16 16 N 1.30825 * 119.99389 * 162.21601 * 15 13 12 17 17 Si 1.86797 * 120.00060 * 342.21769 * 15 13 12 18 18 H 1.48499 * 109.47212 * 95.38331 * 17 15 13 19 19 H 1.48497 * 109.46871 * 215.38453 * 17 15 13 20 20 H 1.48506 * 109.47220 * 335.37908 * 17 15 13 21 21 H 1.08004 * 119.99862 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.00225 * 180.02562 * 1 2 3 23 23 H 1.07995 * 119.99810 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.46914 * 4.99820 * 3 2 1 25 25 H 1.08993 * 109.47063 * 245.00132 * 3 2 1 26 26 H 1.00894 * 111.00029 * 300.00219 * 6 4 3 27 27 H 1.00899 * 110.99991 * 63.95040 * 6 4 3 28 28 H 1.07994 * 119.88033 * 359.72640 * 8 7 4 29 29 H 1.07995 * 119.74891 * 179.97438 * 9 8 7 30 30 H 1.08005 * 119.87716 * 179.97438 * 10 9 8 31 31 H 1.08001 * 120.13291 * 179.97438 * 11 10 9 32 32 H 0.96997 * 119.99262 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6827 0.4574 1.1404 6 7 2.2765 1.3223 2.4396 7 6 3.8748 2.5825 1.1120 8 6 3.5609 3.6703 1.8949 9 6 4.3352 4.8186 1.8374 10 6 5.4324 4.8859 0.9924 11 6 5.7643 3.8110 0.2000 12 6 4.9859 2.6396 0.2509 13 6 5.3182 1.5280 -0.5575 14 1 5.0940 0.5275 -0.2185 15 6 5.9375 1.7247 -1.7971 16 7 6.5544 0.7319 -2.3848 17 14 5.8833 3.4045 -2.6123 18 1 7.1215 4.1550 -2.2825 19 1 5.7830 3.2372 -4.0844 20 1 4.7020 4.1567 -2.1180 21 1 -0.5400 0.9354 -0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6213 1.4025 -0.9313 26 1 1.6681 2.1248 2.5019 27 1 1.7549 0.4645 2.5399 28 1 2.7085 3.6288 2.5566 29 1 4.0814 5.6675 2.4549 30 1 6.0285 5.7858 0.9554 31 1 6.6191 3.8657 -0.4577 32 1 6.9833 0.8681 -3.2441 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104503350.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:29 Heat of formation + Delta-G solvation = 27.895766 kcal Electronic energy + Delta-G solvation = -14390.613267 eV Core-core repulsion = 12122.644199 eV Total energy + Delta-G solvation = -2267.969068 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.42755 -35.87594 -33.59768 -32.63965 -30.53195 -29.19132 -27.12181 -25.11449 -22.63017 -21.05134 -19.48802 -19.24699 -17.39715 -16.12236 -15.11928 -14.96924 -14.45197 -13.76094 -13.65022 -13.25508 -12.93889 -12.85775 -12.34129 -12.00305 -11.65991 -11.36183 -10.89380 -10.80290 -10.72632 -10.54116 -10.13712 -9.70635 -9.37379 -9.18708 -9.09257 -8.15384 -7.56624 -7.47406 -6.92279 -4.45652 2.50014 2.65209 2.73682 3.12370 3.21770 3.32666 3.99480 4.53668 5.18262 5.20536 5.43370 5.47240 5.87033 5.94592 6.06721 6.09808 6.15977 6.28404 6.42735 6.63754 6.70395 6.77181 6.93672 6.97918 7.07090 7.22877 7.45693 7.57875 7.74065 7.78836 7.96872 8.01883 8.18032 8.38451 8.68666 8.83386 10.10067 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.022671 B = 0.012995 C = 0.009345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.757041 B = 2154.142980 C = 2995.629788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.134 4.134 3 C -0.125 4.125 4 C 0.161 3.839 5 H 0.085 0.915 6 N -0.842 5.842 7 C -0.170 4.170 8 C -0.068 4.068 9 C -0.244 4.244 10 C -0.083 4.083 11 C -0.237 4.237 12 C 0.099 3.901 13 C -0.448 4.448 14 H 0.093 0.907 15 C 0.086 3.914 16 N -0.811 5.811 17 Si 0.907 3.093 18 H -0.272 1.272 19 H -0.293 1.293 20 H -0.245 1.245 21 H 0.090 0.910 22 H 0.091 0.909 23 H 0.107 0.893 24 H 0.056 0.944 25 H 0.092 0.908 26 H 0.331 0.669 27 H 0.330 0.670 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.180 1.515 2.219 7.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.152 4.152 3 C -0.164 4.164 4 C 0.050 3.950 5 H 0.102 0.898 6 N -0.370 5.370 7 C -0.172 4.172 8 C -0.086 4.086 9 C -0.263 4.263 10 C -0.101 4.101 11 C -0.256 4.256 12 C 0.096 3.904 13 C -0.477 4.477 14 H 0.110 0.890 15 C -0.132 4.132 16 N -0.436 5.436 17 Si 0.734 3.266 18 H -0.198 1.198 19 H -0.220 1.220 20 H -0.168 1.168 21 H 0.109 0.891 22 H 0.109 0.891 23 H 0.125 0.875 24 H 0.075 0.925 25 H 0.111 0.889 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.323 1.389 2.379 6.897 hybrid contribution -0.664 0.600 -1.180 1.481 sum -6.988 1.989 1.199 7.364 Atomic orbital electron populations 1.23722 0.95948 1.01095 1.04747 1.23187 0.95834 0.99312 0.96833 1.21580 0.98461 0.93623 1.02716 1.19867 0.92504 0.97550 0.85087 0.89752 1.59080 1.33567 1.06717 1.37651 1.19498 0.98217 0.95032 1.04428 1.20416 0.98171 0.92994 0.97063 1.20403 1.00897 0.98606 1.06378 1.20605 0.96404 0.96841 0.96295 1.21004 1.02528 0.96388 1.05670 1.17523 0.89181 0.92044 0.91677 1.19432 1.32599 0.94711 1.00959 0.88959 1.26098 0.91018 0.98555 0.97574 1.69698 1.24135 1.33920 1.15823 0.86377 0.81075 0.82445 0.76686 1.19787 1.22041 1.16825 0.89123 0.89113 0.87522 0.92494 0.88941 0.85583 0.85771 0.88460 0.89115 0.89118 0.88335 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.88 14.32 29.01 0.42 -2.47 16 2 C -0.13 -2.03 8.69 -36.03 -0.31 -2.35 16 3 C -0.12 -2.22 5.24 -27.89 -0.15 -2.37 16 4 C 0.16 3.11 2.51 -68.87 -0.17 2.93 16 5 H 0.08 1.79 6.76 -51.93 -0.35 1.44 16 6 N -0.84 -13.84 8.67 -5.66 -0.05 -13.89 16 7 C -0.17 -3.81 5.14 -103.91 -0.53 -4.35 16 8 C -0.07 -1.43 9.24 -39.66 -0.37 -1.80 16 9 C -0.24 -5.15 10.05 -39.29 -0.39 -5.54 16 10 C -0.08 -1.84 10.02 -39.66 -0.40 -2.24 16 11 C -0.24 -5.76 7.17 -38.87 -0.28 -6.04 16 12 C 0.10 2.46 5.09 -106.82 -0.54 1.91 16 13 C -0.45 -11.67 8.19 -37.74 -0.31 -11.98 16 14 H 0.09 2.50 6.74 -52.49 -0.35 2.15 16 15 C 0.09 2.21 5.41 -17.34 -0.09 2.12 16 16 N -0.81 -21.36 13.93 55.55 0.77 -20.59 16 17 Si 0.91 20.79 24.52 -169.99 -4.17 16.62 16 18 H -0.27 -6.12 6.72 56.52 0.38 -5.74 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.25 -5.76 6.86 56.52 0.39 -5.37 16 21 H 0.09 1.15 7.84 -52.48 -0.41 0.74 16 22 H 0.09 1.05 8.06 -52.49 -0.42 0.62 16 23 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 24 H 0.06 0.97 7.79 -51.93 -0.40 0.57 16 25 H 0.09 1.89 7.43 -51.93 -0.39 1.51 16 26 H 0.33 5.05 7.29 -39.29 -0.29 4.76 16 27 H 0.33 4.78 8.29 -39.29 -0.33 4.45 16 28 H 0.10 1.80 6.24 -52.49 -0.33 1.48 16 29 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 30 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.10 2.40 4.78 -52.49 -0.25 2.15 16 32 H 0.28 6.82 8.30 -40.82 -0.34 6.49 16 LS Contribution 262.56 15.07 3.96 3.96 Total: -1.00 -26.54 262.56 -6.58 -33.12 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -3.96 Total: 12.93 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: -3.14 Total: -32.16 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.72 Total: -34.47 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.17 Total: 16.62 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -26.54 -6.58 -33.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104503350.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.019 kcal (2) G-P(sol) polarization free energy of solvation -26.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds