Wall clock time and date at job start Mon Mar 30 2020 02:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 120.00149 * 2 1 4 4 C 1.52997 * 109.47393 * 124.99703 * 3 2 1 5 5 H 1.09000 * 109.47051 * 55.00052 * 4 3 2 6 6 N 1.46901 * 109.47320 * 295.00236 * 4 3 2 7 7 C 1.50699 * 109.47322 * 174.99849 * 4 3 2 8 8 C 1.37641 * 120.12380 * 100.00307 * 7 4 3 9 9 C 1.38616 * 120.24735 * 179.70451 * 8 7 4 10 10 C 1.38654 * 120.49924 * 0.02562 * 9 8 7 11 11 C 1.37601 * 120.25303 * 0.02562 * 10 9 8 12 12 C 1.40692 * 120.12907 * 279.73068 * 7 4 3 13 13 C 1.41402 * 120.24317 * 0.24417 * 12 7 4 14 14 H 1.07995 * 120.00066 * 329.63294 * 13 12 7 15 15 C 1.39955 * 119.99516 * 149.62108 * 13 12 7 16 16 N 1.30825 * 119.99389 * 162.21601 * 15 13 12 17 17 Si 1.86797 * 120.00060 * 342.21769 * 15 13 12 18 18 H 1.48499 * 109.47212 * 95.38331 * 17 15 13 19 19 H 1.48497 * 109.46871 * 215.38453 * 17 15 13 20 20 H 1.48506 * 109.47220 * 335.37908 * 17 15 13 21 21 H 1.08004 * 119.99862 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.00225 * 180.02562 * 1 2 3 23 23 H 1.07995 * 119.99810 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.46914 * 4.99820 * 3 2 1 25 25 H 1.08993 * 109.47063 * 245.00132 * 3 2 1 26 26 H 1.00894 * 111.00029 * 300.00219 * 6 4 3 27 27 H 1.00899 * 110.99991 * 63.95040 * 6 4 3 28 28 H 1.07994 * 119.88033 * 359.72640 * 8 7 4 29 29 H 1.07995 * 119.74891 * 179.97438 * 9 8 7 30 30 H 1.08005 * 119.87716 * 179.97438 * 10 9 8 31 31 H 1.08001 * 120.13291 * 179.97438 * 11 10 9 32 32 H 0.96997 * 119.99262 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6827 0.4574 1.1404 6 7 2.2765 1.3223 2.4396 7 6 3.8748 2.5825 1.1120 8 6 3.5609 3.6703 1.8949 9 6 4.3352 4.8186 1.8374 10 6 5.4324 4.8859 0.9924 11 6 5.7643 3.8110 0.2000 12 6 4.9859 2.6396 0.2509 13 6 5.3182 1.5280 -0.5575 14 1 5.0940 0.5275 -0.2185 15 6 5.9375 1.7247 -1.7971 16 7 6.5544 0.7319 -2.3848 17 14 5.8833 3.4045 -2.6123 18 1 7.1215 4.1550 -2.2825 19 1 5.7830 3.2372 -4.0844 20 1 4.7020 4.1567 -2.1180 21 1 -0.5400 0.9354 -0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6213 1.4025 -0.9313 26 1 1.6681 2.1248 2.5019 27 1 1.7549 0.4645 2.5399 28 1 2.7085 3.6288 2.5566 29 1 4.0814 5.6675 2.4549 30 1 6.0285 5.7858 0.9554 31 1 6.6191 3.8657 -0.4577 32 1 6.9833 0.8681 -3.2441 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104503350.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:29 Heat of formation + Delta-G solvation = 11.490311 kcal Electronic energy + Delta-G solvation = -14391.324661 eV Core-core repulsion = 12122.644199 eV Total energy + Delta-G solvation = -2268.680462 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.12541 -37.36461 -35.48274 -33.96024 -32.35059 -30.84017 -28.52850 -26.96025 -24.21254 -22.84240 -20.93296 -20.69801 -19.27881 -17.80293 -16.70129 -16.47316 -16.01415 -15.48352 -15.30011 -14.70659 -14.61746 -14.31882 -13.93542 -13.76260 -13.36577 -12.91451 -12.68003 -12.49887 -12.35129 -11.99827 -11.80787 -11.54141 -11.10144 -10.94477 -10.36597 -9.57885 -9.37942 -9.17752 -8.84907 -6.41302 0.82270 0.92188 1.26020 1.37395 1.42672 1.47531 2.12850 2.66825 3.51758 3.83343 3.98265 4.20235 4.38249 4.41255 4.54447 4.56259 4.62355 4.80021 4.97238 5.05454 5.10453 5.21020 5.25931 5.41226 5.68315 5.75029 5.87340 5.90056 5.97777 6.05476 6.30996 6.42205 6.50697 6.74919 6.83980 6.92301 8.23163 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.022671 B = 0.012995 C = 0.009345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.757041 B = 2154.142980 C = 2995.629788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C -0.113 4.113 4 C 0.168 3.832 5 H 0.055 0.945 6 N -0.836 5.836 7 C -0.176 4.176 8 C -0.074 4.074 9 C -0.230 4.230 10 C -0.094 4.094 11 C -0.256 4.256 12 C 0.074 3.926 13 C -0.469 4.469 14 H 0.062 0.938 15 C 0.051 3.949 16 N -0.853 5.853 17 Si 0.957 3.043 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.255 1.255 21 H 0.102 0.898 22 H 0.114 0.886 23 H 0.101 0.899 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.342 0.658 27 H 0.344 0.656 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.208 3.292 3.495 10.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.180 4.180 3 C -0.152 4.152 4 C 0.056 3.944 5 H 0.073 0.927 6 N -0.367 5.367 7 C -0.177 4.177 8 C -0.093 4.093 9 C -0.248 4.248 10 C -0.112 4.112 11 C -0.275 4.275 12 C 0.071 3.929 13 C -0.499 4.499 14 H 0.080 0.920 15 C -0.163 4.163 16 N -0.480 5.480 17 Si 0.782 3.218 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.178 1.178 21 H 0.120 0.880 22 H 0.132 0.868 23 H 0.119 0.881 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.156 0.844 27 H 0.158 0.842 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.138 0.862 31 H 0.109 0.891 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.360 3.163 3.666 9.661 hybrid contribution -0.180 0.114 -1.377 1.393 sum -8.540 3.278 2.289 9.429 Atomic orbital electron populations 1.23964 0.94911 1.02722 1.00442 1.22957 0.96608 0.97779 1.00656 1.21369 0.98035 0.95636 1.00153 1.19618 0.92594 0.95043 0.87138 0.92707 1.58957 1.34031 1.08051 1.35663 1.19922 0.97693 0.96711 1.03410 1.20813 0.99124 0.92416 0.96899 1.20928 0.99429 0.99428 1.05058 1.20973 0.97212 0.97212 0.95767 1.21146 1.02623 0.97168 1.06589 1.17731 0.90480 0.92107 0.92545 1.19345 1.34465 0.93997 1.02117 0.91963 1.26666 0.90749 1.01121 0.97771 1.69731 1.26080 1.35414 1.16799 0.85606 0.80632 0.79188 0.76362 1.19079 1.20887 1.17846 0.88020 0.86756 0.88103 0.91471 0.92691 0.84356 0.84212 0.85372 0.85508 0.86191 0.89097 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.31 14.32 67.78 0.97 -3.34 16 2 C -0.16 -4.81 8.69 25.64 0.22 -4.59 16 3 C -0.11 -4.03 5.24 29.85 0.16 -3.87 16 4 C 0.17 6.50 2.51 44.17 0.11 6.62 16 5 H 0.05 2.46 6.76 -2.39 -0.02 2.44 16 6 N -0.84 -25.88 8.67 -171.81 -1.49 -27.37 16 7 C -0.18 -7.80 5.14 -19.41 -0.10 -7.90 16 8 C -0.07 -2.91 9.24 22.22 0.21 -2.71 16 9 C -0.23 -8.81 10.05 22.46 0.23 -8.58 16 10 C -0.09 -3.90 10.02 22.22 0.22 -3.68 16 11 C -0.26 -12.37 7.17 22.73 0.16 -12.20 16 12 C 0.07 3.76 5.09 -21.29 -0.11 3.65 16 13 C -0.47 -25.82 8.19 23.47 0.19 -25.63 16 14 H 0.06 3.67 6.74 -2.91 -0.02 3.65 16 15 C 0.05 2.73 5.41 85.26 0.46 3.19 16 16 N -0.85 -47.14 13.93 21.83 0.30 -46.84 16 17 Si 0.96 43.79 24.52 68.60 1.68 45.47 16 18 H -0.27 -11.68 6.72 99.48 0.67 -11.01 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.25 -11.88 6.86 99.48 0.68 -11.20 16 21 H 0.10 2.20 7.84 -2.91 -0.02 2.17 16 22 H 0.11 2.19 8.06 -2.91 -0.02 2.17 16 23 H 0.10 3.09 8.06 -2.91 -0.02 3.06 16 24 H 0.07 2.20 7.79 -2.38 -0.02 2.18 16 25 H 0.05 2.36 7.43 -2.39 -0.02 2.34 16 26 H 0.34 9.31 7.29 -89.70 -0.65 8.66 16 27 H 0.34 9.25 8.29 -89.69 -0.74 8.50 16 28 H 0.13 4.20 6.24 -2.91 -0.02 4.18 16 29 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 30 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 31 H 0.09 4.45 4.78 -2.91 -0.01 4.44 16 32 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 Total: -1.00 -58.63 262.56 2.89 -55.74 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: -0.33 Total: 32.04 kcal Atomic # 6 Polarization: -61.77 SS G_CDS: 2.72 Total: -59.05 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -1.19 Total: -74.20 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.68 Total: 45.47 kcal Total: -58.63 2.89 -55.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104503350.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.228 kcal (2) G-P(sol) polarization free energy of solvation -58.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds