Wall clock time and date at job start Mon Mar 30 2020 02:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 120.00129 * 2 1 4 4 H 1.48506 * 109.47183 * 240.00241 * 3 2 1 5 5 H 1.48501 * 109.46994 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46762 * 120.00058 * 3 2 1 7 7 C 1.39945 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99740 * 197.70645 * 7 2 1 9 9 C 1.41396 * 120.00086 * 17.71288 * 7 2 1 10 10 C 1.40733 * 120.24499 * 24.52826 * 9 7 2 11 11 C 1.37599 * 119.74056 * 180.27552 * 10 9 7 12 12 C 1.38657 * 120.25212 * 359.49921 * 11 10 9 13 13 C 1.38616 * 120.50082 * 0.22992 * 12 11 10 14 14 C 1.50689 * 119.87416 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.46955 * 160.00045 * 14 13 12 16 16 N 1.46893 * 109.47558 * 40.00152 * 14 13 12 17 17 C 1.53002 * 109.47234 * 279.99857 * 14 13 12 18 18 C 1.52997 * 117.50127 * 248.62556 * 17 14 13 19 19 C 1.52996 * 60.00170 * 252.50815 * 18 17 14 20 20 C 1.37640 * 120.24452 * 0.02562 * 13 12 11 21 21 H 0.96996 * 120.00028 * 359.97438 * 1 2 3 22 22 H 1.07993 * 120.13026 * 0.03276 * 10 9 7 23 23 H 1.07999 * 119.87011 * 179.77375 * 11 10 9 24 24 H 1.08001 * 119.74857 * 180.25268 * 12 11 10 25 25 H 1.00904 * 111.00514 * 176.04615 * 16 14 13 26 26 H 1.00908 * 111.00409 * 299.99931 * 16 14 13 27 27 H 1.09003 * 115.55102 * 34.33446 * 17 14 13 28 28 H 1.09000 * 117.49790 * 359.97438 * 18 17 14 29 29 H 1.09005 * 117.50128 * 145.02127 * 18 17 14 30 30 H 1.09000 * 117.50515 * 252.50903 * 19 18 17 31 31 H 1.09005 * 117.49926 * 107.48398 * 19 18 17 32 32 H 1.08002 * 120.12215 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2126 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0496 -1.2343 0.2839 9 6 1.3512 -2.4073 -0.3736 10 6 0.2198 -2.3633 -1.2094 11 6 -0.4147 -3.5325 -1.5614 12 6 0.0628 -4.7514 -1.1043 13 6 1.1797 -4.8070 -0.2853 14 6 1.6869 -6.1394 0.2029 15 1 2.7263 -6.0400 0.5157 16 7 1.5940 -7.1259 -0.8815 17 6 0.8396 -6.6042 1.3891 18 6 1.5087 -6.6393 2.7645 19 6 1.1985 -7.9457 2.0311 20 6 1.8271 -3.6498 0.0838 21 1 -0.4850 0.8400 0.0004 22 1 -0.1513 -1.4154 -1.5700 23 1 -1.2853 -3.5009 -2.1997 24 1 -0.4391 -5.6643 -1.3890 25 1 1.9876 -8.0113 -0.5997 26 1 0.6394 -7.2362 -1.1894 27 1 -0.2151 -6.3317 1.3489 28 1 2.5526 -6.3317 2.8243 29 1 0.8943 -6.3898 3.6296 30 1 0.3802 -8.5557 2.4136 31 1 2.0384 -8.4973 1.6084 32 1 2.6969 -3.6955 0.7224 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104504334.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:40 Heat of formation + Delta-G solvation = 31.678448 kcal Electronic energy + Delta-G solvation = -14007.694372 eV Core-core repulsion = 11739.889333 eV Total energy + Delta-G solvation = -2267.805039 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.52315 -36.78978 -33.93743 -32.68169 -29.78078 -29.15221 -25.17161 -24.69882 -22.15641 -20.97713 -20.61683 -19.40553 -17.07946 -15.81762 -15.31102 -15.11278 -14.40369 -14.29515 -13.69766 -13.29325 -12.62999 -12.35369 -11.88275 -11.53683 -11.47910 -11.33660 -11.08148 -10.81279 -10.58422 -10.42266 -10.15945 -10.04477 -9.47698 -9.30643 -9.08597 -8.31164 -7.39393 -7.18620 -6.70349 -4.29857 2.85167 3.02796 3.09271 3.12277 3.28143 3.97162 3.99869 4.64771 4.91709 5.05060 5.12434 5.36423 5.59024 5.71035 5.77263 6.00068 6.07019 6.13209 6.23797 6.40957 6.53148 6.53763 6.99286 7.11256 7.30077 7.42329 7.52569 7.66991 7.84247 7.97943 8.10658 8.18205 8.35406 8.69857 8.95698 9.04175 10.24891 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.041230 B = 0.007304 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.951826 B = 3832.539093 C = 4153.369943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.110 3.890 10 C -0.164 4.164 11 C -0.108 4.108 12 C -0.223 4.223 13 C -0.050 4.050 14 C 0.167 3.833 15 H 0.075 0.925 16 N -0.833 5.833 17 C -0.173 4.173 18 C -0.171 4.171 19 C -0.190 4.190 20 C -0.213 4.213 21 H 0.279 0.721 22 H 0.116 0.884 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.329 0.671 26 H 0.339 0.661 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.852 -8.075 2.117 8.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.108 3.892 10 C -0.183 4.183 11 C -0.127 4.127 12 C -0.243 4.243 13 C -0.050 4.050 14 C 0.056 3.944 15 H 0.094 0.906 16 N -0.361 5.361 17 C -0.193 4.193 18 C -0.209 4.209 19 C -0.227 4.227 20 C -0.233 4.233 21 H 0.090 0.910 22 H 0.134 0.866 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.140 0.860 26 H 0.153 0.847 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.121 -7.410 1.700 7.684 hybrid contribution -0.393 0.274 0.816 0.946 sum 0.729 -7.135 2.517 7.601 Atomic orbital electron populations 1.69825 1.07548 1.29124 1.35794 1.25881 0.94688 1.01181 0.92292 0.86405 0.80163 0.80400 0.79937 1.18851 1.20410 1.19082 1.19516 0.98006 0.91291 1.40789 0.90620 1.17548 0.91213 0.91844 0.88590 1.21319 0.99253 0.96757 1.00987 1.20650 0.98631 0.93390 1.00000 1.20024 1.00855 0.95703 1.07705 1.18969 0.95925 0.91994 0.98120 1.19867 0.97120 0.90637 0.86778 0.90640 1.59052 1.25805 1.12433 1.38797 1.23339 1.01314 0.99303 0.95323 1.22883 1.01677 1.00623 0.95732 1.22911 1.03262 0.90925 1.05613 1.20765 1.03473 0.92299 1.06798 0.90965 0.86598 0.89622 0.89880 0.85970 0.84707 0.87875 0.88805 0.89132 0.89314 0.89226 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.02 10.95 55.55 0.61 -20.41 16 2 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 3 Si 0.91 19.02 29.59 -169.99 -5.03 13.98 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.47 -12.64 9.05 -37.74 -0.34 -12.99 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.11 3.01 5.57 -106.82 -0.60 2.41 16 10 C -0.16 -4.36 8.70 -38.87 -0.34 -4.70 16 11 C -0.11 -2.60 10.02 -39.66 -0.40 -3.00 16 12 C -0.22 -5.01 9.30 -39.29 -0.37 -5.38 16 13 C -0.05 -1.11 4.93 -104.71 -0.52 -1.62 16 14 C 0.17 2.97 3.19 -68.87 -0.22 2.75 16 15 H 0.08 1.36 7.75 -51.93 -0.40 0.96 16 16 N -0.83 -13.03 9.03 -5.66 -0.05 -13.08 16 17 C -0.17 -2.71 5.31 -90.62 -0.48 -3.19 16 18 C -0.17 -2.41 10.18 -26.74 -0.27 -2.68 16 19 C -0.19 -2.36 9.86 -26.73 -0.26 -2.62 16 20 C -0.21 -5.32 9.41 -38.87 -0.37 -5.69 16 21 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 22 H 0.12 3.18 6.16 -52.49 -0.32 2.86 16 23 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 24 H 0.08 1.65 6.64 -52.49 -0.35 1.30 16 25 H 0.33 4.23 8.30 -39.29 -0.33 3.90 16 26 H 0.34 5.13 7.33 -39.29 -0.29 4.84 16 27 H 0.10 1.76 8.11 -51.93 -0.42 1.34 16 28 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.01 7.74 -51.93 -0.40 0.61 16 32 H 0.09 2.13 8.03 -52.49 -0.42 1.70 16 LS Contribution 270.22 15.07 4.07 4.07 Total: -1.00 -27.81 270.22 -8.81 -36.63 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -4.17 Total: 13.64 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: -4.25 Total: -34.84 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.56 Total: -33.49 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.81 -8.81 -36.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104504334.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.307 kcal (2) G-P(sol) polarization free energy of solvation -27.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds