Wall clock time and date at job start Mon Mar 30 2020 02:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 120.00129 * 2 1 4 4 H 1.48506 * 109.47183 * 240.00241 * 3 2 1 5 5 H 1.48501 * 109.46994 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46762 * 120.00058 * 3 2 1 7 7 C 1.39945 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99740 * 197.70645 * 7 2 1 9 9 C 1.41396 * 120.00086 * 17.71288 * 7 2 1 10 10 C 1.40733 * 120.24499 * 24.52826 * 9 7 2 11 11 C 1.37599 * 119.74056 * 180.27552 * 10 9 7 12 12 C 1.38657 * 120.25212 * 359.49921 * 11 10 9 13 13 C 1.38616 * 120.50082 * 0.22992 * 12 11 10 14 14 C 1.50689 * 119.87416 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.46955 * 160.00045 * 14 13 12 16 16 N 1.46893 * 109.47558 * 40.00152 * 14 13 12 17 17 C 1.53002 * 109.47234 * 279.99857 * 14 13 12 18 18 C 1.52997 * 117.50127 * 248.62556 * 17 14 13 19 19 C 1.52996 * 60.00170 * 252.50815 * 18 17 14 20 20 C 1.37640 * 120.24452 * 0.02562 * 13 12 11 21 21 H 0.96996 * 120.00028 * 359.97438 * 1 2 3 22 22 H 1.07993 * 120.13026 * 0.03276 * 10 9 7 23 23 H 1.07999 * 119.87011 * 179.77375 * 11 10 9 24 24 H 1.08001 * 119.74857 * 180.25268 * 12 11 10 25 25 H 1.00904 * 111.00514 * 176.04615 * 16 14 13 26 26 H 1.00908 * 111.00409 * 299.99931 * 16 14 13 27 27 H 1.09003 * 115.55102 * 34.33446 * 17 14 13 28 28 H 1.09000 * 117.49790 * 359.97438 * 18 17 14 29 29 H 1.09005 * 117.50128 * 145.02127 * 18 17 14 30 30 H 1.09000 * 117.50515 * 252.50903 * 19 18 17 31 31 H 1.09005 * 117.49926 * 107.48398 * 19 18 17 32 32 H 1.08002 * 120.12215 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2126 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0496 -1.2343 0.2839 9 6 1.3512 -2.4073 -0.3736 10 6 0.2198 -2.3633 -1.2094 11 6 -0.4147 -3.5325 -1.5614 12 6 0.0628 -4.7514 -1.1043 13 6 1.1797 -4.8070 -0.2853 14 6 1.6869 -6.1394 0.2029 15 1 2.7263 -6.0400 0.5157 16 7 1.5940 -7.1259 -0.8815 17 6 0.8396 -6.6042 1.3891 18 6 1.5087 -6.6393 2.7645 19 6 1.1985 -7.9457 2.0311 20 6 1.8271 -3.6498 0.0838 21 1 -0.4850 0.8400 0.0004 22 1 -0.1513 -1.4154 -1.5700 23 1 -1.2853 -3.5009 -2.1997 24 1 -0.4391 -5.6643 -1.3890 25 1 1.9876 -8.0113 -0.5997 26 1 0.6394 -7.2362 -1.1894 27 1 -0.2151 -6.3317 1.3489 28 1 2.5526 -6.3317 2.8243 29 1 0.8943 -6.3898 3.6296 30 1 0.3802 -8.5557 2.4136 31 1 2.0384 -8.4973 1.6084 32 1 2.6969 -3.6955 0.7224 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104504334.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:40 Heat of formation + Delta-G solvation = 15.670810 kcal Electronic energy + Delta-G solvation = -14008.388515 eV Core-core repulsion = 11739.889333 eV Total energy + Delta-G solvation = -2268.499182 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.06960 -38.34974 -35.68966 -34.19114 -31.71352 -30.88368 -27.13154 -26.16765 -23.20635 -22.65705 -22.40285 -20.95872 -18.89191 -17.44609 -17.03126 -16.48922 -16.03845 -15.55288 -15.32697 -15.04867 -14.26295 -14.12623 -13.48348 -13.21047 -13.07366 -12.78583 -12.55233 -12.41398 -12.32443 -12.13969 -11.65450 -11.34040 -11.14168 -11.02241 -10.95019 -9.59411 -9.34677 -9.05197 -8.62254 -6.33108 1.02134 1.11875 1.37056 1.48575 1.55189 2.21132 2.73093 2.89828 3.64046 3.72455 3.98873 3.99734 4.17459 4.24852 4.45171 4.67384 4.70538 4.74537 4.81661 4.99529 5.06555 5.14728 5.22853 5.24856 5.34839 5.56299 5.71824 6.06015 6.11967 6.18195 6.34663 6.42826 6.71168 6.75720 6.96616 7.07346 8.35265 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.041230 B = 0.007304 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.951826 B = 3832.539093 C = 4153.369943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.506 4.506 8 H 0.072 0.928 9 C 0.079 3.921 10 C -0.194 4.194 11 C -0.113 4.113 12 C -0.220 4.220 13 C -0.045 4.045 14 C 0.176 3.824 15 H 0.072 0.928 16 N -0.836 5.836 17 C -0.194 4.194 18 C -0.181 4.181 19 C -0.154 4.154 20 C -0.235 4.235 21 H 0.287 0.713 22 H 0.098 0.902 23 H 0.108 0.892 24 H 0.115 0.885 25 H 0.348 0.652 26 H 0.344 0.656 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.079 -9.564 2.377 9.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.536 4.536 8 H 0.091 0.909 9 C 0.077 3.923 10 C -0.214 4.214 11 C -0.131 4.131 12 C -0.240 4.240 13 C -0.046 4.046 14 C 0.064 3.936 15 H 0.090 0.910 16 N -0.366 5.366 17 C -0.215 4.215 18 C -0.219 4.219 19 C -0.191 4.191 20 C -0.255 4.255 21 H 0.098 0.902 22 H 0.116 0.884 23 H 0.126 0.874 24 H 0.133 0.867 25 H 0.162 0.838 26 H 0.158 0.842 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.344 -8.932 1.962 9.244 hybrid contribution -0.504 0.596 0.731 1.070 sum 0.840 -8.336 2.694 8.801 Atomic orbital electron populations 1.69883 1.09010 1.30466 1.36137 1.26750 0.95489 1.04470 0.91204 0.85275 0.78817 0.75691 0.80039 1.18564 1.19054 1.18334 1.19782 0.98214 0.92682 1.42877 0.90944 1.17926 0.92006 0.93015 0.89344 1.21275 1.00394 0.97088 1.02642 1.20973 0.99021 0.93242 0.99901 1.20405 1.00632 0.96275 1.06668 1.19445 0.95037 0.93541 0.96542 1.19649 0.96988 0.88956 0.88013 0.91003 1.58938 1.26362 1.13168 1.38108 1.23092 1.00086 1.02916 0.95357 1.22992 1.01585 1.02322 0.95027 1.23008 1.03869 0.89621 1.02627 1.20951 1.04141 0.92812 1.07569 0.90240 0.88395 0.87378 0.86712 0.83760 0.84172 0.89419 0.88871 0.88717 0.87436 0.87477 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.99 10.95 21.83 0.24 -44.76 16 2 C 0.04 1.84 5.14 85.26 0.44 2.28 16 3 Si 0.98 39.54 29.59 68.60 2.03 41.57 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.51 -28.56 9.05 23.46 0.21 -28.35 16 8 H 0.07 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.08 4.49 5.57 -21.29 -0.12 4.37 16 10 C -0.19 -10.73 8.70 22.73 0.20 -10.54 16 11 C -0.11 -5.45 10.02 22.22 0.22 -5.23 16 12 C -0.22 -9.66 9.30 22.46 0.21 -9.45 16 13 C -0.05 -1.99 4.93 -19.92 -0.10 -2.09 16 14 C 0.18 5.93 3.19 44.17 0.14 6.07 16 15 H 0.07 2.49 7.75 -2.39 -0.02 2.47 16 16 N -0.84 -23.76 9.03 -171.82 -1.55 -25.31 16 17 C -0.19 -5.70 5.31 -10.79 -0.06 -5.75 16 18 C -0.18 -4.74 10.18 30.59 0.31 -4.43 16 19 C -0.15 -3.26 9.86 30.59 0.30 -2.96 16 20 C -0.23 -12.02 9.41 22.73 0.21 -11.80 16 21 H 0.29 14.08 8.30 -92.71 -0.77 13.32 16 22 H 0.10 5.65 6.16 -2.91 -0.02 5.63 16 23 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 24 H 0.11 4.26 6.64 -2.91 -0.02 4.24 16 25 H 0.35 7.69 8.30 -89.69 -0.74 6.95 16 26 H 0.34 9.30 7.33 -89.69 -0.66 8.64 16 27 H 0.09 2.86 8.11 -2.39 -0.02 2.84 16 28 H 0.09 2.43 8.05 -2.39 -0.02 2.41 16 29 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.11 1.93 7.74 -2.38 -0.02 1.91 16 32 H 0.09 4.43 8.03 -2.91 -0.02 4.40 16 Total: -1.00 -61.56 270.22 2.42 -59.14 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: -0.27 Total: 37.23 kcal Atomic # 6 Polarization: -69.85 SS G_CDS: 1.97 Total: -67.87 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -1.31 Total: -70.07 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -61.56 2.42 -59.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104504334.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.809 kcal (2) G-P(sol) polarization free energy of solvation -61.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds