Wall clock time and date at job start Mon Mar 30 2020 02:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86804 * 119.99681 * 2 1 4 4 H 1.48497 * 109.47251 * 275.41525 * 3 2 1 5 5 H 1.48493 * 109.47031 * 35.41922 * 3 2 1 6 6 H 1.48503 * 109.46660 * 155.41744 * 3 2 1 7 7 C 1.39940 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99926 * 341.72102 * 7 2 1 9 9 C 1.41400 * 120.00366 * 161.72427 * 7 2 1 10 10 C 1.40738 * 120.24065 * 330.21707 * 9 7 2 11 11 C 1.37597 * 119.74241 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24909 * 359.73466 * 11 10 9 13 13 C 1.38611 * 120.49919 * 0.54300 * 12 11 10 14 14 C 1.50701 * 119.87528 * 179.72818 * 13 12 11 15 15 H 1.08997 * 109.47442 * 199.72972 * 14 13 12 16 16 N 1.46904 * 109.47099 * 319.72671 * 14 13 12 17 17 C 1.52999 * 109.47554 * 79.72795 * 14 13 12 18 18 C 1.52999 * 117.49834 * 248.62777 * 17 14 13 19 19 C 1.52997 * 117.50432 * 180.02562 * 17 14 13 20 20 C 1.37639 * 120.25388 * 359.45092 * 13 12 11 21 21 H 0.96996 * 119.99974 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.12923 * 0.02562 * 10 9 7 23 23 H 1.07997 * 119.87151 * 180.02562 * 11 10 9 24 24 H 1.08000 * 119.75170 * 180.29606 * 12 11 10 25 25 H 1.00899 * 111.00064 * 296.04661 * 16 14 13 26 26 H 1.00903 * 111.00059 * 60.00005 * 16 14 13 27 27 H 1.09003 * 115.54801 * 34.32724 * 17 14 13 28 28 H 1.09001 * 117.49881 * 359.97438 * 18 17 14 29 29 H 1.09003 * 117.50219 * 145.01728 * 18 17 14 30 30 H 1.09001 * 117.49912 * 214.97895 * 19 17 14 31 31 H 1.09003 * 117.49422 * 359.97438 * 19 17 14 32 32 H 1.07988 * 120.13609 * 180.24916 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1126 -1.3938 5 1 1.5016 2.6169 0.8114 6 1 3.5923 1.4099 0.5825 7 6 2.0080 -1.2119 -0.0005 8 1 1.5090 -2.1237 0.2924 9 6 3.3686 -1.2426 -0.3846 10 6 3.8635 -0.3104 -1.3156 11 6 5.1891 -0.3500 -1.6824 12 6 6.0374 -1.3000 -1.1343 13 6 5.5595 -2.2265 -0.2208 14 6 6.4926 -3.2567 0.3615 15 1 5.9121 -4.0875 0.7625 16 7 7.3934 -3.7508 -0.6886 17 6 7.3169 -2.6222 1.4834 18 6 8.8149 -2.4308 1.2379 19 6 8.3307 -3.5121 2.2054 20 6 4.2373 -2.2057 0.1608 21 1 -0.4850 0.8400 0.0004 22 1 3.2054 0.4331 -1.7405 23 1 5.5712 0.3646 -2.3963 24 1 7.0776 -1.3207 -1.4243 25 1 6.8778 -4.2316 -1.4105 26 1 7.9431 -2.9989 -1.0767 27 1 6.8024 -1.8639 2.0736 28 1 9.2133 -2.7573 0.2773 29 1 9.2863 -1.5463 1.6666 30 1 8.4833 -3.3392 3.2707 31 1 8.4101 -4.5498 1.8813 32 1 3.8679 -2.9259 0.8757 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104504335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:42 Heat of formation + Delta-G solvation = 35.475624 kcal Electronic energy + Delta-G solvation = -14124.430041 eV Core-core repulsion = 11856.789660 eV Total energy + Delta-G solvation = -2267.640381 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.77970 -36.97078 -33.90510 -32.80601 -30.27209 -29.57365 -25.27660 -25.12160 -22.12842 -21.13795 -20.69626 -19.27466 -17.18642 -16.22864 -15.99207 -14.84949 -14.59820 -14.35664 -13.70048 -13.51706 -12.80083 -12.61247 -12.08806 -11.98308 -11.63260 -11.18438 -11.05475 -10.95460 -10.68823 -10.42464 -10.14618 -9.81615 -9.73360 -9.55208 -9.18866 -8.42399 -7.71674 -7.53835 -6.96659 -4.51295 2.56100 2.58971 3.09087 3.19839 3.30160 3.96599 4.11320 4.43982 4.92890 5.05124 5.27325 5.31252 5.40833 5.75327 5.88291 5.89851 5.95513 6.10380 6.17977 6.27453 6.43233 6.49353 6.51857 6.73576 6.90260 7.13360 7.33439 7.45374 7.59273 7.70497 7.78578 7.85463 8.08839 8.33657 8.63809 8.78665 10.05965 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.043240 B = 0.007840 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.399664 B = 3570.542450 C = 3640.747299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.085 3.915 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.245 1.245 7 C -0.450 4.450 8 H 0.090 0.910 9 C 0.094 3.906 10 C -0.238 4.238 11 C -0.079 4.079 12 C -0.237 4.237 13 C -0.084 4.084 14 C 0.162 3.838 15 H 0.083 0.917 16 N -0.840 5.840 17 C -0.138 4.138 18 C -0.175 4.175 19 C -0.174 4.174 20 C -0.198 4.198 21 H 0.285 0.715 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.340 0.660 26 H 0.338 0.662 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.918 -1.873 0.739 11.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.134 4.134 3 Si 0.739 3.261 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.479 4.479 8 H 0.108 0.892 9 C 0.091 3.909 10 C -0.257 4.257 11 C -0.097 4.097 12 C -0.256 4.256 13 C -0.086 4.086 14 C 0.051 3.949 15 H 0.101 0.899 16 N -0.369 5.369 17 C -0.156 4.156 18 C -0.212 4.212 19 C -0.211 4.211 20 C -0.218 4.218 21 H 0.095 0.905 22 H 0.116 0.884 23 H 0.110 0.890 24 H 0.107 0.893 25 H 0.152 0.848 26 H 0.152 0.848 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.974 -2.243 1.343 11.281 hybrid contribution -0.467 1.572 -0.677 1.775 sum 10.507 -0.671 0.666 10.549 Atomic orbital electron populations 1.69699 1.08082 1.30216 1.35381 1.26143 0.94688 1.01712 0.90860 0.86305 0.81280 0.79817 0.78739 1.19764 1.21853 1.16839 1.19486 0.93246 0.96098 1.39056 0.89220 1.17728 0.92963 0.90809 0.89443 1.21044 0.95670 1.04834 1.04201 1.20565 0.93878 0.97134 0.98143 1.20074 0.97741 1.01524 1.06275 1.20140 0.94593 0.96741 0.97153 1.19793 0.90396 0.94229 0.90482 0.89942 1.59248 1.28020 1.32396 1.17263 1.22327 0.91006 1.02076 1.00215 1.22836 0.96983 1.00095 1.01324 1.22841 1.04583 0.96836 0.96874 1.20895 0.92411 1.04173 1.04327 0.90482 0.88379 0.89031 0.89280 0.84814 0.84774 0.87811 0.88123 0.89925 0.89801 0.88632 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.74 13.93 55.55 0.77 -20.97 16 2 C 0.08 2.24 5.40 -17.34 -0.09 2.15 16 3 Si 0.91 21.08 24.52 -169.99 -4.17 16.91 16 4 H -0.27 -6.10 6.71 56.52 0.38 -5.72 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.25 -5.83 6.86 56.52 0.39 -5.45 16 7 C -0.45 -12.26 9.57 -37.74 -0.36 -12.62 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.09 2.38 5.11 -106.82 -0.55 1.83 16 10 C -0.24 -5.78 7.18 -38.87 -0.28 -6.06 16 11 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 12 C -0.24 -4.74 9.30 -39.29 -0.37 -5.11 16 13 C -0.08 -1.69 4.92 -104.70 -0.51 -2.21 16 14 C 0.16 2.67 3.33 -68.86 -0.23 2.44 16 15 H 0.08 1.38 7.99 -51.93 -0.42 0.97 16 16 N -0.84 -11.92 8.09 -5.65 -0.05 -11.96 16 17 C -0.14 -2.12 5.69 -90.62 -0.52 -2.63 16 18 C -0.18 -2.33 9.69 -26.75 -0.26 -2.59 16 19 C -0.17 -2.28 10.17 -26.76 -0.27 -2.56 16 20 C -0.20 -4.56 9.41 -38.87 -0.37 -4.92 16 21 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 22 H 0.10 2.39 4.73 -52.49 -0.25 2.14 16 23 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 24 H 0.09 1.57 6.65 -52.49 -0.35 1.22 16 25 H 0.34 4.66 9.06 -39.29 -0.36 4.31 16 26 H 0.34 4.63 5.85 -39.29 -0.23 4.40 16 27 H 0.10 1.73 8.11 -51.93 -0.42 1.31 16 28 H 0.10 1.30 6.27 -51.93 -0.33 0.98 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.10 2.20 8.03 -52.49 -0.42 1.78 16 LS Contribution 262.53 15.07 3.96 3.96 Total: -1.00 -26.82 262.53 -7.73 -34.56 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -4.05 Total: 11.90 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: -4.20 Total: -34.39 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.73 Total: -32.93 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.17 Total: 16.91 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -26.82 -7.73 -34.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104504335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.033 kcal (2) G-P(sol) polarization free energy of solvation -26.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds