Wall clock time and date at job start Mon Mar 30 2020 02:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86804 * 119.99681 * 2 1 4 4 H 1.48497 * 109.47251 * 275.41525 * 3 2 1 5 5 H 1.48493 * 109.47031 * 35.41922 * 3 2 1 6 6 H 1.48503 * 109.46660 * 155.41744 * 3 2 1 7 7 C 1.39940 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99926 * 341.72102 * 7 2 1 9 9 C 1.41400 * 120.00366 * 161.72427 * 7 2 1 10 10 C 1.40738 * 120.24065 * 330.21707 * 9 7 2 11 11 C 1.37597 * 119.74241 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24909 * 359.73466 * 11 10 9 13 13 C 1.38611 * 120.49919 * 0.54300 * 12 11 10 14 14 C 1.50701 * 119.87528 * 179.72818 * 13 12 11 15 15 H 1.08997 * 109.47442 * 199.72972 * 14 13 12 16 16 N 1.46904 * 109.47099 * 319.72671 * 14 13 12 17 17 C 1.52999 * 109.47554 * 79.72795 * 14 13 12 18 18 C 1.52999 * 117.49834 * 248.62777 * 17 14 13 19 19 C 1.52997 * 117.50432 * 180.02562 * 17 14 13 20 20 C 1.37639 * 120.25388 * 359.45092 * 13 12 11 21 21 H 0.96996 * 119.99974 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.12923 * 0.02562 * 10 9 7 23 23 H 1.07997 * 119.87151 * 180.02562 * 11 10 9 24 24 H 1.08000 * 119.75170 * 180.29606 * 12 11 10 25 25 H 1.00899 * 111.00064 * 296.04661 * 16 14 13 26 26 H 1.00903 * 111.00059 * 60.00005 * 16 14 13 27 27 H 1.09003 * 115.54801 * 34.32724 * 17 14 13 28 28 H 1.09001 * 117.49881 * 359.97438 * 18 17 14 29 29 H 1.09003 * 117.50219 * 145.01728 * 18 17 14 30 30 H 1.09001 * 117.49912 * 214.97895 * 19 17 14 31 31 H 1.09003 * 117.49422 * 359.97438 * 19 17 14 32 32 H 1.07988 * 120.13609 * 180.24916 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3753 2.1126 -1.3938 5 1 1.5016 2.6169 0.8114 6 1 3.5923 1.4099 0.5825 7 6 2.0080 -1.2119 -0.0005 8 1 1.5090 -2.1237 0.2924 9 6 3.3686 -1.2426 -0.3846 10 6 3.8635 -0.3104 -1.3156 11 6 5.1891 -0.3500 -1.6824 12 6 6.0374 -1.3000 -1.1343 13 6 5.5595 -2.2265 -0.2208 14 6 6.4926 -3.2567 0.3615 15 1 5.9121 -4.0875 0.7625 16 7 7.3934 -3.7508 -0.6886 17 6 7.3169 -2.6222 1.4834 18 6 8.8149 -2.4308 1.2379 19 6 8.3307 -3.5121 2.2054 20 6 4.2373 -2.2057 0.1608 21 1 -0.4850 0.8400 0.0004 22 1 3.2054 0.4331 -1.7405 23 1 5.5712 0.3646 -2.3963 24 1 7.0776 -1.3207 -1.4243 25 1 6.8778 -4.2316 -1.4105 26 1 7.9431 -2.9989 -1.0767 27 1 6.8024 -1.8639 2.0736 28 1 9.2133 -2.7573 0.2773 29 1 9.2863 -1.5463 1.6666 30 1 8.4833 -3.3392 3.2707 31 1 8.4101 -4.5498 1.8813 32 1 3.8679 -2.9259 0.8757 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104504335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:42 Heat of formation + Delta-G solvation = 19.284897 kcal Electronic energy + Delta-G solvation = -14125.132124 eV Core-core repulsion = 11856.789660 eV Total energy + Delta-G solvation = -2268.342464 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30472 -38.42349 -35.66373 -34.28730 -32.10274 -31.15694 -27.02479 -26.65115 -23.20323 -22.74826 -22.45005 -20.67534 -18.99013 -17.78088 -17.45453 -16.47586 -16.15858 -15.87351 -15.25343 -14.91625 -14.56294 -14.19802 -13.87714 -13.49959 -13.27106 -12.77880 -12.69151 -12.32282 -12.14828 -12.10316 -11.69004 -11.48371 -11.26756 -10.99976 -10.77966 -9.73077 -9.54254 -9.26465 -8.92774 -6.53944 0.77064 0.79258 1.22201 1.37178 1.44871 2.08897 2.55901 3.01583 3.43772 3.72873 3.90457 4.12397 4.18047 4.30113 4.39672 4.50088 4.65749 4.71378 4.85414 4.90443 4.97424 5.07302 5.12624 5.32233 5.37919 5.43831 5.58549 5.79556 5.88026 5.95914 6.17177 6.29670 6.41013 6.61571 6.72844 6.81890 8.16114 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.043240 B = 0.007840 C = 0.007689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.399664 B = 3570.542450 C = 3640.747299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.048 3.952 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.491 4.491 8 H 0.053 0.947 9 C 0.073 3.927 10 C -0.254 4.254 11 C -0.084 4.084 12 C -0.216 4.216 13 C -0.076 4.076 14 C 0.170 3.830 15 H 0.076 0.924 16 N -0.827 5.827 17 C -0.163 4.163 18 C -0.162 4.162 19 C -0.160 4.160 20 C -0.215 4.215 21 H 0.293 0.707 22 H 0.093 0.907 23 H 0.126 0.874 24 H 0.127 0.873 25 H 0.345 0.655 26 H 0.345 0.655 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.488 -1.355 0.122 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.167 4.167 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.520 4.520 8 H 0.071 0.929 9 C 0.070 3.930 10 C -0.274 4.274 11 C -0.102 4.102 12 C -0.235 4.235 13 C -0.078 4.078 14 C 0.058 3.942 15 H 0.094 0.906 16 N -0.357 5.357 17 C -0.182 4.182 18 C -0.199 4.199 19 C -0.197 4.197 20 C -0.235 4.235 21 H 0.104 0.896 22 H 0.111 0.889 23 H 0.144 0.856 24 H 0.145 0.855 25 H 0.157 0.843 26 H 0.160 0.840 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 14.552 -1.736 0.715 14.672 hybrid contribution -1.358 1.259 -0.515 1.922 sum 13.194 -0.477 0.199 13.204 Atomic orbital electron populations 1.69728 1.09132 1.31393 1.37594 1.26804 0.95319 1.04159 0.90370 0.85460 0.79456 0.76603 0.79373 1.18405 1.20312 1.18011 1.19478 0.94770 0.95549 1.42237 0.92859 1.17882 0.92561 0.92258 0.90272 1.21154 0.97124 1.04721 1.04370 1.20987 0.92835 0.97989 0.98405 1.20568 0.99278 0.99593 1.04111 1.20585 0.93862 0.97183 0.96208 1.19679 0.90188 0.92920 0.91384 0.90631 1.59212 1.27157 1.32225 1.17092 1.22180 0.92068 1.03244 1.00701 1.22941 0.94661 1.00511 1.01820 1.22896 1.02306 0.96808 0.97724 1.21059 0.93807 1.03921 1.04762 0.89632 0.88878 0.85648 0.85532 0.84256 0.83953 0.89598 0.87278 0.88789 0.88475 0.88361 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.83 13.93 21.83 0.30 -47.53 16 2 C 0.05 2.62 5.40 85.25 0.46 3.08 16 3 Si 0.97 43.97 24.52 68.60 1.68 45.65 16 4 H -0.26 -11.09 6.71 99.48 0.67 -10.43 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 6 H -0.26 -11.95 6.86 99.48 0.68 -11.26 16 7 C -0.49 -28.34 9.57 23.46 0.22 -28.11 16 8 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 9 C 0.07 3.78 5.11 -21.29 -0.11 3.68 16 10 C -0.25 -12.16 7.18 22.73 0.16 -12.00 16 11 C -0.08 -3.37 10.02 22.22 0.22 -3.15 16 12 C -0.22 -7.85 9.30 22.46 0.21 -7.64 16 13 C -0.08 -2.92 4.92 -19.92 -0.10 -3.01 16 14 C 0.17 5.18 3.33 44.17 0.15 5.33 16 15 H 0.08 2.42 7.99 -2.39 -0.02 2.41 16 16 N -0.83 -20.33 8.09 -171.80 -1.39 -21.72 16 17 C -0.16 -4.58 5.69 -10.79 -0.06 -4.64 16 18 C -0.16 -3.65 9.69 30.58 0.30 -3.35 16 19 C -0.16 -3.66 10.17 30.58 0.31 -3.35 16 20 C -0.22 -10.04 9.41 22.73 0.21 -9.82 16 21 H 0.29 14.76 8.30 -92.71 -0.77 13.99 16 22 H 0.09 4.49 4.73 -2.91 -0.01 4.47 16 23 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 24 H 0.13 3.70 6.65 -2.91 -0.02 3.68 16 25 H 0.34 8.24 9.06 -89.69 -0.81 7.43 16 26 H 0.35 7.75 5.85 -89.69 -0.52 7.23 16 27 H 0.09 2.73 8.11 -2.39 -0.02 2.71 16 28 H 0.11 2.28 6.27 -2.39 -0.01 2.27 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.09 4.37 8.03 -2.92 -0.02 4.34 16 Total: -1.00 -59.59 262.53 2.31 -57.28 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -0.27 Total: 29.31 kcal Atomic # 6 Polarization: -64.97 SS G_CDS: 1.98 Total: -62.99 kcal Atomic # 7 Polarization: -68.17 SS G_CDS: -1.09 Total: -69.25 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.68 Total: 45.65 kcal Total: -59.59 2.31 -57.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104504335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.564 kcal (2) G-P(sol) polarization free energy of solvation -59.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds