Wall clock time and date at job start Mon Mar 30 2020 02:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37956 * 119.89928 * 2 1 4 4 C 1.38258 * 120.25906 * 180.02562 * 3 2 1 5 5 C 1.38352 * 119.88887 * 0.14615 * 4 3 2 6 6 C 1.37873 * 120.07615 * 359.95134 * 5 4 3 7 7 C 1.39008 * 120.48195 * 359.51389 * 6 5 4 8 8 N 1.40037 * 110.94657 * 180.56793 * 7 6 5 9 9 C 1.46905 * 110.78134 * 103.58491 * 8 7 6 10 10 C 1.50706 * 109.46850 * 170.22064 * 9 8 7 11 11 H 1.07999 * 119.99675 * 359.97438 * 10 9 8 12 12 C 1.37867 * 120.00011 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00465 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00098 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47259 * 89.99958 * 14 12 10 16 16 H 1.48500 * 109.47368 * 210.00295 * 14 12 10 17 17 H 1.48498 * 109.46768 * 330.00231 * 14 12 10 18 18 C 1.47904 * 107.93835 * 341.86763 * 8 7 6 19 19 C 1.51578 * 131.56540 * 179.56711 * 6 5 4 20 20 H 1.09002 * 109.47152 * 90.00152 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00253 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00234 * 1 2 3 23 23 H 1.07997 * 119.87091 * 359.97438 * 3 2 1 24 24 H 1.08004 * 120.05870 * 180.17230 * 4 3 2 25 25 H 1.07997 * 119.95679 * 179.97438 * 5 4 3 26 26 H 1.08995 * 109.47211 * 290.21637 * 9 8 7 27 27 H 1.08999 * 109.46744 * 50.22183 * 9 8 7 28 28 H 0.96992 * 120.00783 * 179.97438 * 13 12 10 29 29 H 1.09003 * 110.77557 * 268.83690 * 18 8 7 30 30 H 1.09005 * 110.94176 * 145.48364 * 18 8 7 31 31 H 1.08997 * 110.73856 * 314.37726 * 19 6 5 32 32 H 1.09003 * 110.73758 * 77.69910 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.1959 0.0000 4 6 3.5773 1.2046 -0.0005 5 6 4.2742 0.0095 -0.0041 6 6 3.5916 -1.1884 -0.0062 7 6 2.2017 -1.2080 0.0055 8 7 1.7197 -2.5228 0.0140 9 6 1.2485 -2.8966 1.3543 10 6 0.5216 -4.2147 1.2817 11 1 0.4194 -4.7236 0.3346 12 6 -0.0139 -4.7705 2.4241 13 7 -0.6488 -5.9205 2.3608 14 14 0.1621 -3.8900 4.0622 15 1 -0.9941 -2.9797 4.2617 16 1 0.2005 -4.8894 5.1599 17 1 1.4200 -3.1008 4.0671 18 6 2.8147 -3.4124 -0.4301 19 6 4.0791 -2.6236 -0.0187 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.6510 2.1290 -0.0004 24 1 4.1124 2.1428 0.0023 25 1 5.3542 0.0150 -0.0050 26 1 2.1014 -2.9887 2.0267 27 1 0.5718 -2.1286 1.7288 28 1 -1.0252 -6.3117 3.1645 29 1 2.7827 -3.5554 -1.5103 30 1 2.7717 -4.3711 0.0868 31 1 4.8726 -2.7554 -0.7542 32 1 4.4165 -2.9253 0.9730 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108241922.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:01 Heat of formation + Delta-G solvation = 33.660937 kcal Electronic energy + Delta-G solvation = -14474.795830 eV Core-core repulsion = 12207.076758 eV Total energy + Delta-G solvation = -2267.719072 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.28293 -36.45908 -33.25846 -32.47829 -30.18283 -28.50166 -27.46450 -25.84078 -22.73922 -21.63919 -20.75147 -19.51482 -16.86480 -15.87089 -15.63945 -14.83857 -14.74183 -14.11663 -13.42185 -13.23752 -12.84714 -12.60600 -12.38277 -12.13302 -12.11474 -11.60881 -11.30953 -11.19260 -10.86582 -10.67189 -10.43071 -10.32470 -10.02989 -9.45421 -8.72418 -8.59269 -8.26715 -7.14861 -6.12026 -4.10674 1.69759 1.75053 3.24449 3.32140 3.35227 4.04190 4.35782 4.44886 5.02612 5.16621 5.19621 5.26470 5.44679 5.60464 5.67135 5.69250 5.87434 5.99220 6.10994 6.21375 6.26039 6.38966 6.49857 6.62567 6.70102 6.78589 6.81042 6.82584 7.03809 7.24926 7.51871 7.75609 8.00373 8.56951 8.96061 9.48625 11.00693 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.033278 B = 0.009703 C = 0.008846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.203293 B = 2885.034115 C = 3164.445848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.088 4.088 3 C -0.109 4.109 4 C -0.147 4.147 5 C -0.098 4.098 6 C -0.148 4.148 7 C 0.111 3.889 8 N -0.481 5.481 9 C 0.167 3.833 10 C -0.515 4.515 11 H 0.083 0.917 12 C 0.072 3.928 13 N -0.896 5.896 14 Si 0.870 3.130 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.267 1.267 18 C 0.057 3.943 19 C -0.109 4.109 20 H 0.066 0.934 21 H 0.056 0.944 22 H 0.078 0.922 23 H 0.119 0.881 24 H 0.117 0.883 25 H 0.113 0.887 26 H -0.003 1.003 27 H 0.028 0.972 28 H 0.265 0.735 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.756 11.374 -3.553 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.127 4.127 4 C -0.166 4.166 5 C -0.117 4.117 6 C -0.151 4.151 7 C 0.013 3.987 8 N -0.197 5.197 9 C 0.044 3.956 10 C -0.553 4.553 11 H 0.101 0.899 12 C -0.130 4.130 13 N -0.535 5.535 14 Si 0.697 3.303 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.192 1.192 18 C -0.071 4.071 19 C -0.147 4.147 20 H 0.085 0.915 21 H 0.075 0.925 22 H 0.097 0.903 23 H 0.137 0.863 24 H 0.135 0.865 25 H 0.131 0.869 26 H 0.015 0.985 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.161 11.092 -3.750 13.725 hybrid contribution 0.693 0.484 1.419 1.651 sum 7.854 11.576 -2.331 14.182 Atomic orbital electron populations 1.20741 0.91067 1.02792 1.02170 1.19368 0.96208 0.90716 1.02692 1.20730 0.94107 0.96661 1.01234 1.20850 0.94145 0.97217 1.04391 1.20281 0.99018 0.91170 1.01183 1.21143 0.94890 0.95193 1.03844 1.19780 0.91636 0.91296 0.95956 1.60107 1.33418 0.98105 1.28051 1.20289 0.94857 0.97533 0.82923 1.21005 1.34599 1.03049 0.96637 0.89917 1.24851 0.94710 0.94757 0.98659 1.69879 1.36812 1.17665 1.29111 0.86933 0.79260 0.79904 0.84203 1.19945 1.20983 1.19189 1.23076 0.86033 0.97190 1.00769 1.21719 0.99726 0.91199 1.02090 0.91546 0.92548 0.90273 0.86264 0.86479 0.86925 0.98495 0.95371 0.92515 0.90721 0.88291 0.90473 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.97 36.01 0.36 -1.48 16 2 C -0.09 -1.56 5.90 -104.31 -0.62 -2.17 16 3 C -0.11 -1.63 9.67 -39.68 -0.38 -2.01 16 4 C -0.15 -2.08 10.06 -39.53 -0.40 -2.47 16 5 C -0.10 -1.49 10.03 -39.67 -0.40 -1.89 16 6 C -0.15 -2.62 6.23 -104.04 -0.65 -3.27 16 7 C 0.11 2.20 5.25 -83.41 -0.44 1.76 16 8 N -0.48 -10.52 4.88 -170.38 -0.83 -11.35 16 9 C 0.17 4.11 3.34 -4.97 -0.02 4.09 16 10 C -0.51 -14.43 8.86 -34.44 -0.31 -14.74 16 11 H 0.08 2.52 8.03 -52.49 -0.42 2.10 16 12 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 13 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 14 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 18 C 0.06 1.08 6.70 -2.43 -0.02 1.06 16 19 C -0.11 -1.81 6.92 -26.61 -0.18 -1.99 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 21 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 22 H 0.08 1.52 6.22 -51.93 -0.32 1.19 16 23 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 24 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 25 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 26 H 0.00 -0.07 7.08 -51.93 -0.37 -0.44 16 27 H 0.03 0.70 6.00 -51.93 -0.31 0.39 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.10 2.02 7.11 -51.93 -0.37 1.65 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 263.02 15.07 3.96 3.96 Total: -1.00 -30.31 263.02 -8.24 -38.56 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.34 Total: -0.44 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -3.14 Total: -21.14 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.06 Total: -37.64 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.31 -8.24 -38.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108241922.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.217 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds