Wall clock time and date at job start Mon Mar 30 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32017 * 1 3 3 C 1.50707 * 120.00149 * 2 1 4 4 N 1.38959 * 119.99942 * 180.02562 * 2 1 3 5 5 C 1.39706 * 120.00018 * 6.70273 * 4 2 1 6 6 C 1.38945 * 120.07760 * 222.19813 * 5 4 2 7 7 C 1.38077 * 119.92510 * 180.02562 * 6 5 4 8 8 C 1.38312 * 120.07532 * 359.74261 * 7 6 5 9 9 C 1.38274 * 120.15253 * 0.51381 * 8 7 6 10 10 C 1.50699 * 119.95996 * 179.76708 * 9 8 7 11 11 C 1.50698 * 109.47358 * 269.71881 * 10 9 8 12 12 H 1.07998 * 119.99351 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00335 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99982 * 179.72714 * 13 11 10 15 15 Si 1.86800 * 119.99997 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47381 * 269.72779 * 15 13 11 17 17 H 1.48499 * 109.46817 * 29.72765 * 15 13 11 18 18 H 1.48501 * 109.47112 * 149.72440 * 15 13 11 19 19 C 1.38117 * 120.07711 * 359.48636 * 9 8 7 20 20 H 1.08000 * 119.99511 * 6.20973 * 1 2 3 21 21 H 1.07994 * 119.99923 * 186.21498 * 1 2 3 22 22 H 1.08998 * 109.46909 * 240.00371 * 3 2 1 23 23 H 1.08999 * 109.46936 * 0.02562 * 3 2 1 24 24 H 1.08998 * 109.46859 * 120.00246 * 3 2 1 25 25 H 0.96998 * 119.99648 * 186.70138 * 4 2 1 26 26 H 1.08004 * 120.03967 * 359.97438 * 6 5 4 27 27 H 1.08004 * 119.96023 * 180.02562 * 7 6 5 28 28 H 1.08000 * 119.92535 * 180.25598 * 8 7 6 29 29 H 1.09005 * 109.47013 * 149.72258 * 10 9 8 30 30 H 1.09001 * 109.47234 * 29.72762 * 10 9 8 31 31 H 0.97006 * 120.00057 * 180.27425 * 14 13 11 32 32 H 1.07990 * 120.04265 * 180.23443 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3202 0.0000 0.0000 3 6 2.0737 1.3051 0.0000 4 7 2.0150 -1.2034 -0.0005 5 6 1.3236 -2.4091 -0.1423 6 6 1.6661 -3.5045 0.6409 7 6 0.9810 -4.6948 0.4978 8 6 -0.0486 -4.7959 -0.4201 9 6 -0.3887 -3.7094 -1.2049 10 6 -1.5078 -3.8259 -2.2073 11 6 -0.9508 -4.2811 -3.5315 12 1 0.1077 -4.4677 -3.6365 13 6 -1.7924 -4.4592 -4.6089 14 7 -1.3055 -4.8513 -5.7659 15 14 -3.6234 -4.1371 -4.4271 16 1 -4.3071 -5.3877 -4.0103 17 1 -3.8416 -3.0876 -3.3994 18 1 -4.1771 -3.6798 -5.7269 19 6 0.2924 -2.5157 -1.0670 20 1 -0.5399 0.9299 -0.1012 21 1 -0.5400 -0.9298 0.1013 22 1 2.7003 1.3629 -0.8900 23 1 1.3654 2.1336 0.0005 24 1 2.7004 1.3628 0.8900 25 1 2.9800 -1.2063 0.0975 26 1 2.4678 -3.4253 1.3602 27 1 1.2465 -5.5464 1.1066 28 1 -0.5856 -5.7268 -0.5271 29 1 -1.9885 -2.8553 -2.3297 30 1 -2.2397 -4.5515 -1.8522 31 1 -1.8971 -4.9728 -6.5251 32 1 0.0238 -1.6664 -1.6775 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238109183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:33 Heat of formation + Delta-G solvation = 39.487215 kcal Electronic energy + Delta-G solvation = -13868.218257 eV Core-core repulsion = 11600.751832 eV Total energy + Delta-G solvation = -2267.466425 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.43436 -36.74528 -33.45460 -31.98241 -31.10940 -28.74511 -27.36048 -26.96331 -22.96728 -21.96949 -20.35020 -19.06140 -16.75199 -16.61187 -15.70332 -15.53421 -14.61932 -14.22532 -13.65639 -13.38159 -12.87320 -12.66905 -12.50648 -12.32382 -12.11175 -11.62341 -11.38412 -11.12274 -10.92235 -10.69513 -10.38556 -9.99033 -9.88045 -9.35849 -8.56397 -8.48512 -7.88554 -6.99426 -6.05384 -4.04201 1.89675 2.06157 2.79966 3.30445 3.38118 3.41815 3.63975 4.43601 4.43757 4.98482 5.26717 5.32917 5.45069 5.49779 5.52236 5.82837 5.88320 5.97479 6.05667 6.23194 6.35374 6.60042 6.65787 6.73539 6.94192 6.99138 7.04794 7.09113 7.46100 7.63465 7.71622 7.87333 8.03782 8.51870 9.00045 9.54974 11.07638 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.029331 B = 0.007899 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.377358 B = 3543.788272 C = 4049.764771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C 0.129 3.871 3 C -0.115 4.115 4 N -0.692 5.692 5 C 0.160 3.840 6 C -0.179 4.179 7 C -0.101 4.101 8 C -0.143 4.143 9 C -0.009 4.009 10 C 0.014 3.986 11 C -0.511 4.511 12 H 0.073 0.927 13 C 0.069 3.931 14 N -0.901 5.901 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.264 1.264 18 H -0.287 1.287 19 C -0.144 4.144 20 H 0.103 0.897 21 H 0.108 0.892 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.399 0.601 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.264 0.736 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.087 7.647 12.758 15.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.354 4.354 2 C 0.030 3.970 3 C -0.173 4.173 4 N -0.315 5.315 5 C 0.066 3.934 6 C -0.200 4.200 7 C -0.119 4.119 8 C -0.161 4.161 9 C -0.010 4.010 10 C -0.023 4.023 11 C -0.549 4.549 12 H 0.091 0.909 13 C -0.133 4.133 14 N -0.539 5.539 15 Si 0.704 3.296 16 H -0.202 1.202 17 H -0.189 1.189 18 H -0.213 1.213 19 C -0.164 4.164 20 H 0.121 0.879 21 H 0.126 0.874 22 H 0.087 0.913 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.233 0.767 26 H 0.129 0.871 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.948 7.607 12.551 15.488 hybrid contribution -0.501 0.043 -0.101 0.513 sum 4.447 7.650 12.450 15.274 Atomic orbital electron populations 1.23572 0.93890 1.03035 1.14894 1.19631 0.93012 0.86080 0.98286 1.20858 1.00534 0.93625 1.02254 1.41900 1.08216 1.02101 1.79303 1.17596 0.95231 0.85507 0.95108 1.20705 1.03811 0.94115 1.01405 1.20821 0.95963 0.96584 0.98567 1.21032 0.98798 0.98856 0.97460 1.20129 0.96117 0.91470 0.93264 1.18826 0.92274 0.97533 0.93714 1.20917 0.96488 1.45327 0.92170 0.90851 1.24991 0.98667 0.94522 0.95073 1.69902 1.35580 1.47120 1.01325 0.86810 0.85819 0.79250 0.77703 1.20153 1.18851 1.21252 1.21004 0.98612 0.98970 0.97822 0.87901 0.87388 0.91332 0.90410 0.91464 0.76728 0.87118 0.86736 0.86351 0.95350 0.95735 0.92633 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -4.69 12.20 28.82 0.35 -4.34 16 2 C 0.13 1.77 6.64 -81.27 -0.54 1.23 16 3 C -0.12 -1.12 10.24 36.01 0.37 -0.75 16 4 N -0.69 -9.96 5.47 -6.93 -0.04 -9.99 16 5 C 0.16 2.78 5.79 -83.76 -0.48 2.30 16 6 C -0.18 -2.88 9.97 -39.38 -0.39 -3.27 16 7 C -0.10 -1.67 10.04 -39.61 -0.40 -2.07 16 8 C -0.14 -2.77 9.69 -39.54 -0.38 -3.15 16 9 C -0.01 -0.20 5.07 -104.65 -0.53 -0.73 16 10 C 0.01 0.33 4.17 -29.04 -0.12 0.21 16 11 C -0.51 -14.75 9.65 -34.44 -0.33 -15.08 16 12 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 15 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 C -0.14 -2.90 7.10 -39.37 -0.28 -3.18 16 20 H 0.10 1.37 7.86 -52.49 -0.41 0.96 16 21 H 0.11 1.88 5.43 -52.49 -0.28 1.60 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 0.68 7.81 -51.93 -0.41 0.27 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.40 4.68 8.88 -40.82 -0.36 4.32 16 26 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 27 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 28 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.03 0.69 7.14 -51.93 -0.37 0.32 16 30 H 0.02 0.58 7.51 -51.93 -0.39 0.19 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.13 2.62 6.70 -52.49 -0.35 2.27 16 LS Contribution 271.76 15.07 4.10 4.10 Total: -1.00 -31.32 271.76 -6.96 -38.28 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.28 Total: 4.67 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -2.84 Total: -26.91 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.74 Total: -37.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.32 -6.96 -38.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238109183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.763 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds