Wall clock time and date at job start Mon Mar 30 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32017 * 1 3 3 C 1.50707 * 120.00149 * 2 1 4 4 N 1.38959 * 119.99942 * 180.02562 * 2 1 3 5 5 C 1.39706 * 120.00018 * 6.70273 * 4 2 1 6 6 C 1.38945 * 120.07760 * 222.19813 * 5 4 2 7 7 C 1.38077 * 119.92510 * 180.02562 * 6 5 4 8 8 C 1.38312 * 120.07532 * 359.74261 * 7 6 5 9 9 C 1.38274 * 120.15253 * 0.51381 * 8 7 6 10 10 C 1.50699 * 119.95996 * 179.76708 * 9 8 7 11 11 C 1.50698 * 109.47358 * 269.71881 * 10 9 8 12 12 H 1.07998 * 119.99351 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00335 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99982 * 179.72714 * 13 11 10 15 15 Si 1.86800 * 119.99997 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47381 * 269.72779 * 15 13 11 17 17 H 1.48499 * 109.46817 * 29.72765 * 15 13 11 18 18 H 1.48501 * 109.47112 * 149.72440 * 15 13 11 19 19 C 1.38117 * 120.07711 * 359.48636 * 9 8 7 20 20 H 1.08000 * 119.99511 * 6.20973 * 1 2 3 21 21 H 1.07994 * 119.99923 * 186.21498 * 1 2 3 22 22 H 1.08998 * 109.46909 * 240.00371 * 3 2 1 23 23 H 1.08999 * 109.46936 * 0.02562 * 3 2 1 24 24 H 1.08998 * 109.46859 * 120.00246 * 3 2 1 25 25 H 0.96998 * 119.99648 * 186.70138 * 4 2 1 26 26 H 1.08004 * 120.03967 * 359.97438 * 6 5 4 27 27 H 1.08004 * 119.96023 * 180.02562 * 7 6 5 28 28 H 1.08000 * 119.92535 * 180.25598 * 8 7 6 29 29 H 1.09005 * 109.47013 * 149.72258 * 10 9 8 30 30 H 1.09001 * 109.47234 * 29.72762 * 10 9 8 31 31 H 0.97006 * 120.00057 * 180.27425 * 14 13 11 32 32 H 1.07990 * 120.04265 * 180.23443 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3202 0.0000 0.0000 3 6 2.0737 1.3051 0.0000 4 7 2.0150 -1.2034 -0.0005 5 6 1.3236 -2.4091 -0.1423 6 6 1.6661 -3.5045 0.6409 7 6 0.9810 -4.6948 0.4978 8 6 -0.0486 -4.7959 -0.4201 9 6 -0.3887 -3.7094 -1.2049 10 6 -1.5078 -3.8259 -2.2073 11 6 -0.9508 -4.2811 -3.5315 12 1 0.1077 -4.4677 -3.6365 13 6 -1.7924 -4.4592 -4.6089 14 7 -1.3055 -4.8513 -5.7659 15 14 -3.6234 -4.1371 -4.4271 16 1 -4.3071 -5.3877 -4.0103 17 1 -3.8416 -3.0876 -3.3994 18 1 -4.1771 -3.6798 -5.7269 19 6 0.2924 -2.5157 -1.0670 20 1 -0.5399 0.9299 -0.1012 21 1 -0.5400 -0.9298 0.1013 22 1 2.7003 1.3629 -0.8900 23 1 1.3654 2.1336 0.0005 24 1 2.7004 1.3628 0.8900 25 1 2.9800 -1.2063 0.0975 26 1 2.4678 -3.4253 1.3602 27 1 1.2465 -5.5464 1.1066 28 1 -0.5856 -5.7268 -0.5271 29 1 -1.9885 -2.8553 -2.3297 30 1 -2.2397 -4.5515 -1.8522 31 1 -1.8971 -4.9728 -6.5251 32 1 0.0238 -1.6664 -1.6775 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238109183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:33 Heat of formation + Delta-G solvation = 20.494350 kcal Electronic energy + Delta-G solvation = -13869.041850 eV Core-core repulsion = 11600.751832 eV Total energy + Delta-G solvation = -2268.290018 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78991 -38.02655 -35.38537 -33.61168 -32.55866 -30.26171 -28.98732 -27.98503 -24.89067 -23.34340 -21.91190 -20.28183 -18.99247 -17.95789 -16.92920 -16.88878 -16.28432 -16.01894 -15.00925 -14.73636 -14.40008 -14.09590 -13.76950 -13.63202 -13.46343 -13.38250 -12.89012 -12.52661 -12.41042 -12.27564 -11.93120 -11.79712 -11.59391 -11.43768 -10.80577 -9.79722 -9.42867 -8.31881 -8.23869 -6.36892 0.49344 0.61397 1.34434 1.36592 1.48910 1.65299 2.33849 2.49301 2.98492 3.02284 4.01795 4.11790 4.15587 4.37602 4.56976 4.62239 4.64980 4.77174 4.80617 5.01262 5.05122 5.12143 5.20232 5.22244 5.44409 5.48353 5.55989 5.60865 5.68573 6.00304 6.09723 6.25666 6.59513 6.68885 6.95891 7.26406 8.84802 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.029331 B = 0.007899 C = 0.006912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.377358 B = 3543.788272 C = 4049.764771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.337 4.337 2 C 0.132 3.868 3 C -0.110 4.110 4 N -0.686 5.686 5 C 0.161 3.839 6 C -0.169 4.169 7 C -0.091 4.091 8 C -0.160 4.160 9 C -0.044 4.044 10 C 0.021 3.979 11 C -0.519 4.519 12 H 0.026 0.974 13 C 0.008 3.992 14 N -0.948 5.948 15 Si 0.950 3.050 16 H -0.261 1.261 17 H -0.250 1.250 18 H -0.280 1.280 19 C -0.160 4.160 20 H 0.117 0.883 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.414 0.586 26 H 0.150 0.850 27 H 0.153 0.847 28 H 0.120 0.880 29 H 0.024 0.976 30 H 0.032 0.968 31 H 0.268 0.732 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.568 8.463 14.943 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.382 4.382 2 C 0.033 3.967 3 C -0.167 4.167 4 N -0.311 5.311 5 C 0.065 3.935 6 C -0.190 4.190 7 C -0.110 4.110 8 C -0.179 4.179 9 C -0.045 4.045 10 C -0.016 4.016 11 C -0.557 4.557 12 H 0.045 0.955 13 C -0.189 4.189 14 N -0.589 5.589 15 Si 0.773 3.227 16 H -0.186 1.186 17 H -0.173 1.173 18 H -0.206 1.206 19 C -0.181 4.181 20 H 0.135 0.865 21 H 0.098 0.902 22 H 0.095 0.905 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.251 0.749 26 H 0.167 0.833 27 H 0.171 0.829 28 H 0.138 0.862 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.455 8.436 14.757 17.851 hybrid contribution -0.497 -0.203 -0.746 0.919 sum 4.958 8.232 14.010 16.990 Atomic orbital electron populations 1.23575 0.94813 1.02463 1.17322 1.20177 0.93034 0.87307 0.96147 1.20925 1.00758 0.91337 1.03708 1.41940 1.08979 1.01458 1.78710 1.17701 0.94397 0.87179 0.94264 1.21140 1.03911 0.93067 1.00888 1.21215 0.94248 0.98056 0.97435 1.21163 1.00235 0.98176 0.98349 1.20002 0.96753 0.93306 0.94417 1.18651 0.93525 0.96988 0.92461 1.21123 0.94534 1.45321 0.94746 0.95520 1.25974 1.04369 0.94082 0.94432 1.70055 1.37766 1.48615 1.02423 0.85656 0.78833 0.80001 0.78219 1.18603 1.17347 1.20590 1.20894 1.00186 0.97966 0.99013 0.86525 0.90240 0.90482 0.89286 0.89144 0.74865 0.83279 0.82918 0.86244 0.95760 0.94979 0.92292 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.34 -10.17 12.20 66.90 0.82 -9.35 16 2 C 0.13 3.42 6.64 40.51 0.27 3.69 16 3 C -0.11 -1.81 10.24 71.24 0.73 -1.08 16 4 N -0.69 -18.34 5.47 -175.83 -0.96 -19.30 16 5 C 0.16 5.39 5.79 38.22 0.22 5.61 16 6 C -0.17 -4.93 9.97 22.40 0.22 -4.71 16 7 C -0.09 -2.79 10.04 22.25 0.22 -2.57 16 8 C -0.16 -6.18 9.69 22.30 0.22 -5.97 16 9 C -0.04 -1.97 5.07 -19.89 -0.10 -2.07 16 10 C 0.02 1.06 4.17 29.10 0.12 1.18 16 11 C -0.52 -31.32 9.65 25.60 0.25 -31.07 16 12 H 0.03 1.79 7.98 -2.91 -0.02 1.77 16 13 C 0.01 0.51 5.47 84.65 0.46 0.97 16 14 N -0.95 -60.64 13.96 21.44 0.30 -60.34 16 15 Si 0.95 45.15 27.47 68.60 1.88 47.04 16 16 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 17 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 C -0.16 -6.61 7.10 22.40 0.16 -6.45 16 20 H 0.12 3.07 7.86 -2.91 -0.02 3.04 16 21 H 0.08 2.86 5.43 -2.91 -0.02 2.84 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.09 1.29 7.81 -2.39 -0.02 1.27 16 24 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.41 8.44 8.88 -92.71 -0.82 7.62 16 26 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 27 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 28 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 29 H 0.02 1.21 7.14 -2.38 -0.02 1.20 16 30 H 0.03 1.54 7.51 -2.39 -0.02 1.52 16 31 H 0.27 15.88 8.31 -92.70 -0.77 15.11 16 32 H 0.11 4.69 6.70 -2.92 -0.02 4.67 16 Total: -1.00 -70.94 271.76 5.04 -65.91 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.23 Total: 18.52 kcal Atomic # 6 Polarization: -55.41 SS G_CDS: 3.59 Total: -51.82 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -0.66 Total: -79.64 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.04 kcal Total: -70.94 5.04 -65.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238109183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.401 kcal (2) G-P(sol) polarization free energy of solvation -70.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds