Wall clock time and date at job start Mon Mar 30 2020 02:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38184 * 120.70704 * 2 1 4 4 C 1.40620 * 118.98371 * 179.76410 * 3 2 1 5 5 C 1.41411 * 119.82722 * 180.27057 * 4 3 2 6 6 H 1.07999 * 119.99921 * 0.24959 * 5 4 3 7 7 C 1.40028 * 120.00167 * 180.25045 * 5 4 3 8 8 N 1.30740 * 119.99745 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00362 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46842 * 59.99631 * 9 7 5 11 11 H 1.48494 * 109.47259 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46736 * 300.00133 * 9 7 5 13 13 N 1.33628 * 120.34335 * 0.52139 * 4 3 2 14 14 C 1.31397 * 121.51907 * 359.74698 * 13 4 3 15 15 C 1.50698 * 119.49856 * 179.97438 * 14 13 4 16 16 C 1.38801 * 121.00816 * 359.97438 * 14 13 4 17 17 C 1.50696 * 120.22116 * 179.97438 * 16 14 13 18 18 C 1.52998 * 117.50217 * 132.42296 * 17 16 14 19 19 C 1.52999 * 117.50034 * 63.75930 * 17 16 14 20 20 H 1.09005 * 109.46584 * 269.71548 * 1 2 3 21 21 H 1.09003 * 109.46785 * 149.72073 * 1 2 3 22 22 H 1.08993 * 109.47368 * 29.71956 * 1 2 3 23 23 H 1.08001 * 120.50697 * 0.02562 * 3 2 1 24 24 H 0.97002 * 119.99751 * 180.02562 * 8 7 5 25 25 H 1.09004 * 109.46890 * 264.30314 * 15 14 13 26 26 H 1.09003 * 109.47193 * 24.29445 * 15 14 13 27 27 H 1.08991 * 109.47344 * 144.29860 * 15 14 13 28 28 H 1.09009 * 115.54899 * 278.08995 * 17 16 14 29 29 H 1.09001 * 117.49498 * 359.97438 * 18 17 16 30 30 H 1.08988 * 117.50290 * 145.01956 * 18 17 16 31 31 H 1.09001 * 117.49475 * 214.97807 * 19 17 16 32 32 H 1.08993 * 117.49937 * 359.97370 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2126 1.1881 0.0000 4 6 3.6182 1.1458 0.0051 5 6 4.3581 2.3509 0.0109 6 1 3.8436 3.3004 0.0156 7 6 5.7579 2.3131 0.0107 8 7 6.3807 1.1636 0.0045 9 14 6.7353 3.9049 0.0192 10 1 6.3977 4.6865 1.2359 11 1 8.1874 3.5942 0.0181 12 1 6.3977 4.6995 -1.1891 13 7 4.2583 -0.0272 -0.0007 14 6 3.6041 -1.1667 -0.0062 15 6 4.3722 -2.4632 -0.0132 16 6 2.2164 -1.1945 -0.0057 17 6 1.4841 -2.5116 -0.0127 18 6 0.3411 -2.6898 0.9886 19 6 1.6658 -3.4274 1.1994 20 1 -0.3633 -0.0051 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3634 0.8924 -0.5094 23 1 1.6926 2.1346 0.0004 24 1 7.3504 1.1374 0.0047 25 1 4.4691 -2.8226 -1.0377 26 1 5.3634 -2.3006 0.4100 27 1 3.8397 -3.2042 0.5829 28 1 1.3762 -2.9843 -0.9890 29 1 0.1191 -1.8545 1.6528 30 1 -0.5185 -3.2800 0.6714 31 1 1.6770 -4.5026 1.0206 32 1 2.3153 -3.0774 2.0017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238470890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:00 Heat of formation + Delta-G solvation = 26.052095 kcal Electronic energy + Delta-G solvation = -14368.438091 eV Core-core repulsion = 12100.389075 eV Total energy + Delta-G solvation = -2268.049016 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.67571 -37.80111 -35.38634 -34.39290 -32.37302 -29.01675 -28.20658 -27.28524 -23.52226 -23.03353 -21.50202 -21.19875 -18.99287 -17.12959 -16.90079 -16.36596 -15.56522 -15.38778 -14.76503 -14.27756 -14.01626 -13.87267 -13.44706 -13.28077 -13.15444 -12.70889 -12.57904 -12.49397 -12.42443 -12.13273 -12.01327 -11.66524 -11.19028 -11.00602 -10.85115 -9.65733 -9.39628 -9.26158 -8.26179 -6.47843 0.90131 1.16659 1.37671 1.50409 1.52609 2.21980 2.82335 3.09054 3.85762 4.06386 4.13694 4.21184 4.29002 4.34553 4.54795 4.73441 4.81135 4.85000 4.90297 4.97085 5.02047 5.05257 5.10652 5.16225 5.22315 5.35674 5.40966 5.43279 5.65028 5.82280 6.02639 6.21714 6.35780 6.77773 7.01549 8.26426 8.47455 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.044376 B = 0.008696 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.821824 B = 3218.931649 C = 3744.472262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.026 4.026 3 C -0.307 4.307 4 C 0.224 3.776 5 C -0.477 4.477 6 H 0.084 0.916 7 C 0.024 3.976 8 N -0.757 5.757 9 Si 0.987 3.013 10 H -0.259 1.259 11 H -0.267 1.267 12 H -0.259 1.259 13 N -0.521 5.521 14 C 0.129 3.871 15 C -0.086 4.086 16 C -0.251 4.251 17 C -0.090 4.090 18 C -0.165 4.165 19 C -0.173 4.173 20 H 0.074 0.926 21 H 0.080 0.920 22 H 0.059 0.941 23 H 0.101 0.899 24 H 0.277 0.723 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 -5.511 0.732 8.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.032 4.032 3 C -0.329 4.329 4 C 0.099 3.901 5 C -0.509 4.509 6 H 0.102 0.898 7 C -0.197 4.197 8 N -0.380 5.380 9 Si 0.807 3.193 10 H -0.184 1.184 11 H -0.191 1.191 12 H -0.183 1.183 13 N -0.235 5.235 14 C -0.016 4.016 15 C -0.143 4.143 16 C -0.256 4.256 17 C -0.108 4.108 18 C -0.202 4.202 19 C -0.210 4.210 20 H 0.092 0.908 21 H 0.099 0.901 22 H 0.078 0.922 23 H 0.119 0.881 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.516 -5.584 0.734 7.883 hybrid contribution -0.162 1.003 -0.035 1.017 sum -5.678 -4.581 0.698 7.329 Atomic orbital electron populations 1.20761 0.89590 1.02594 1.02205 1.20048 0.96755 0.92017 0.94364 1.21764 0.94923 0.97423 1.18808 1.19009 0.89904 0.92270 0.88953 1.19914 0.92391 0.92806 1.45749 0.89823 1.26985 0.99063 1.01166 0.92535 1.70245 1.09721 1.27988 1.30008 0.85213 0.76940 0.77194 0.80001 1.18375 1.19095 1.18341 1.68575 1.38521 0.97037 1.19361 1.21723 0.91324 0.95105 0.93428 1.20622 0.98835 0.92809 1.02083 1.19570 0.93235 0.93933 1.18814 1.20423 1.01784 0.94028 0.94611 1.23096 0.92372 1.02547 1.02174 1.22986 1.00157 0.98433 0.99447 0.90762 0.90082 0.92179 0.88119 0.91224 0.91326 0.93423 0.89071 0.87837 0.89932 0.86556 0.86644 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.14 8.38 71.24 0.60 -2.54 16 2 C -0.03 -1.15 5.86 -19.71 -0.12 -1.26 16 3 C -0.31 -15.96 9.54 22.84 0.22 -15.74 16 4 C 0.22 13.16 6.55 40.23 0.26 13.42 16 5 C -0.48 -27.42 9.14 23.49 0.21 -27.21 16 6 H 0.08 4.51 7.85 -2.91 -0.02 4.49 16 7 C 0.02 1.27 5.50 85.29 0.47 1.73 16 8 N -0.76 -42.71 11.46 21.84 0.25 -42.46 16 9 Si 0.99 39.83 29.56 68.60 2.03 41.86 16 10 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 11 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 12 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 13 N -0.52 -30.46 7.77 -177.21 -1.38 -31.84 16 14 C 0.13 6.44 6.78 42.76 0.29 6.73 16 15 C -0.09 -3.50 9.63 71.24 0.69 -2.82 16 16 C -0.25 -11.03 5.45 -19.57 -0.11 -11.13 16 17 C -0.09 -2.93 4.44 -11.54 -0.05 -2.98 16 18 C -0.17 -4.34 8.31 30.62 0.25 -4.09 16 19 C -0.17 -4.78 8.23 30.62 0.25 -4.53 16 20 H 0.07 2.21 7.23 -2.38 -0.02 2.20 16 21 H 0.08 2.34 6.44 -2.39 -0.02 2.33 16 22 H 0.06 1.87 8.10 -2.39 -0.02 1.85 16 23 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 24 H 0.28 14.14 8.29 -92.71 -0.77 13.37 16 25 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.09 3.10 5.20 -2.39 -0.01 3.08 16 28 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 29 H 0.08 2.35 6.54 -2.39 -0.02 2.34 16 30 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.12 2.49 8.14 -2.39 -0.02 2.48 16 32 H 0.07 2.30 7.81 -2.39 -0.02 2.28 16 Total: -1.00 -66.75 264.12 4.98 -61.77 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 1.11 Total: 21.09 kcal Atomic # 6 Polarization: -53.39 SS G_CDS: 2.97 Total: -50.41 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -1.13 Total: -74.30 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -66.75 4.98 -61.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238470890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.818 kcal (2) G-P(sol) polarization free energy of solvation -66.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds