Wall clock time and date at job start Mon Mar 30 2020 02:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00488 * 2 1 4 4 H 1.48509 * 109.46916 * 269.99668 * 3 2 1 5 5 H 1.48500 * 109.47225 * 29.99305 * 3 2 1 6 6 H 1.48495 * 109.47517 * 149.99681 * 3 2 1 7 7 C 1.37880 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00024 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.33195 * 299.20217 * 9 7 2 11 11 C 1.54905 * 110.37570 * 176.82442 * 9 7 2 12 12 C 1.55144 * 101.65300 * 204.10154 * 11 9 7 13 13 C 1.54315 * 103.01994 * 35.65515 * 12 11 9 14 14 H 1.08996 * 109.89065 * 97.12213 * 13 12 11 15 15 C 1.50703 * 109.88836 * 218.31295 * 13 12 11 16 16 C 1.38232 * 119.99840 * 78.94883 * 15 13 12 17 17 C 1.38239 * 119.99657 * 179.78988 * 16 15 13 18 18 C 1.38237 * 119.99910 * 0.44158 * 17 16 15 19 19 C 1.38243 * 120.00057 * 359.81026 * 18 17 16 20 20 C 1.38235 * 119.99786 * 359.97438 * 19 18 17 21 21 N 1.47451 * 107.23237 * 337.71369 * 13 12 11 22 22 H 0.97000 * 119.99624 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.99033 * 322.19310 * 11 9 7 24 24 H 1.09004 * 110.99001 * 85.97201 * 11 9 7 25 25 H 1.09000 * 110.70164 * 154.03828 * 12 11 9 26 26 H 1.08997 * 110.70209 * 277.09390 * 12 11 9 27 27 H 1.07993 * 120.00768 * 359.97438 * 16 15 13 28 28 H 1.08000 * 120.00416 * 180.27715 * 17 16 15 29 29 H 1.08004 * 120.00204 * 179.83962 * 18 17 16 30 30 H 1.07999 * 119.99615 * 180.02562 * 19 18 17 31 31 H 1.07996 * 119.99610 * 179.97438 * 20 19 18 32 32 H 1.00898 * 110.99919 * 236.74324 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6293 -2.5777 0.8925 11 6 2.2369 -3.6913 -0.0793 12 6 1.3391 -4.8003 -0.6884 13 6 0.4356 -4.0187 -1.6652 14 1 0.8402 -4.0814 -2.6754 15 6 -0.9617 -4.5821 -1.6334 16 6 -1.8190 -4.2463 -0.6023 17 6 -3.1023 -4.7596 -0.5754 18 6 -3.5251 -5.6160 -1.5748 19 6 -2.6660 -5.9559 -2.6032 20 6 -1.3843 -5.4390 -2.6324 21 7 0.4204 -2.6140 -1.2172 22 1 -0.4849 0.8401 -0.0004 23 1 3.0747 -3.4616 -0.7376 24 1 2.5888 -3.9740 0.9129 25 1 1.9423 -5.5334 -1.2240 26 1 0.7452 -5.2843 0.0868 27 1 -1.4873 -3.5806 0.1807 28 1 -3.7736 -4.4938 0.2277 29 1 -4.5269 -6.0192 -1.5525 30 1 -2.9966 -6.6246 -3.3841 31 1 -0.7131 -5.7049 -3.4355 32 1 -0.5226 -2.3003 -1.0427 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238549086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:50 Heat of formation + Delta-G solvation = 20.308798 kcal Electronic energy + Delta-G solvation = -14300.454299 eV Core-core repulsion = 12032.156235 eV Total energy + Delta-G solvation = -2268.298064 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.31124 -36.93260 -32.66886 -31.01296 -30.59983 -28.80134 -27.51615 -24.36177 -22.26269 -21.80951 -19.69599 -19.37917 -16.78964 -16.24354 -15.20849 -14.93696 -14.39158 -14.26965 -13.65322 -13.08575 -12.93644 -12.32237 -12.22189 -11.66661 -11.41328 -11.36940 -10.90364 -10.82571 -10.58457 -10.46745 -10.31470 -9.99913 -9.38695 -9.11293 -8.60094 -8.47344 -8.34745 -6.84018 -5.95891 -3.97523 1.69429 1.71870 3.36598 3.42901 3.45397 4.11405 4.50457 5.14463 5.18460 5.27914 5.29604 5.44290 5.64068 5.71496 5.81664 5.86495 5.91040 6.19448 6.28559 6.34497 6.40971 6.50951 6.74654 6.77538 6.78533 6.82656 6.93487 7.15489 7.33657 7.49605 7.96941 8.28295 8.58422 8.95338 9.08690 9.68485 11.15736 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.041530 B = 0.007935 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.053158 B = 3527.642857 C = 3908.050771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.073 3.927 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.209 3.791 10 H 0.006 0.994 11 C -0.122 4.122 12 C -0.132 4.132 13 C 0.105 3.895 14 H 0.073 0.927 15 C -0.080 4.080 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.136 4.136 19 C -0.125 4.125 20 C -0.120 4.120 21 N -0.654 5.654 22 H 0.259 0.741 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.126 0.874 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 -10.299 -2.359 11.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.130 4.130 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.102 3.898 10 H 0.023 0.977 11 C -0.161 4.161 12 C -0.171 4.171 13 C -0.006 4.006 14 H 0.091 0.909 15 C -0.081 4.081 16 C -0.130 4.130 17 C -0.136 4.136 18 C -0.154 4.154 19 C -0.143 4.143 20 C -0.138 4.138 21 N -0.286 5.286 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.144 0.856 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.862 -9.927 -2.793 11.012 hybrid contribution -0.289 0.501 0.544 0.794 sum -4.151 -9.426 -2.249 10.543 Atomic orbital electron populations 1.69852 1.05992 1.26483 1.50363 1.24940 0.94778 0.98949 0.94292 0.86612 0.79768 0.83554 0.78026 1.20706 1.21468 1.20077 1.21029 0.92518 0.90101 1.50527 0.92507 1.19944 0.89834 0.92578 0.87432 0.97681 1.22771 0.98730 0.95560 0.98991 1.22824 0.97989 0.97940 0.98319 1.21462 0.88988 0.90897 0.99205 0.90911 1.20762 0.97383 0.95959 0.94035 1.21150 0.93675 0.99591 0.98628 1.21104 0.96079 0.97667 0.98766 1.21034 0.99390 0.99487 0.95467 1.21051 0.94247 1.00476 0.98505 1.21029 0.96048 0.97988 0.98781 1.62524 1.17400 1.12091 1.36600 0.93119 0.91745 0.92815 0.92443 0.92458 0.85649 0.86445 0.86748 0.86687 0.86416 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 12.45 55.43 0.69 -24.81 16 2 C 0.07 2.05 5.41 -17.82 -0.10 1.95 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.50 -14.01 8.78 -34.44 -0.30 -14.31 16 8 H 0.06 1.56 7.77 -52.49 -0.41 1.16 16 9 C 0.21 5.24 3.11 -67.34 -0.21 5.03 16 10 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 11 C -0.12 -2.57 6.46 -24.59 -0.16 -2.73 16 12 C -0.13 -2.42 6.45 -24.91 -0.16 -2.58 16 13 C 0.10 2.07 3.69 -67.87 -0.25 1.82 16 14 H 0.07 1.41 8.03 -51.93 -0.42 1.00 16 15 C -0.08 -1.43 4.73 -104.62 -0.49 -1.92 16 16 C -0.11 -2.01 8.68 -39.58 -0.34 -2.35 16 17 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 18 C -0.14 -1.87 10.05 -39.58 -0.40 -2.26 16 19 C -0.12 -1.72 10.05 -39.58 -0.40 -2.11 16 20 C -0.12 -1.85 9.68 -39.58 -0.38 -2.23 16 21 N -0.65 -15.71 6.41 -99.33 -0.64 -16.35 16 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.02 7.81 -51.93 -0.41 0.62 16 27 H 0.13 2.47 7.26 -52.49 -0.38 2.09 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 29 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.12 1.60 8.05 -52.49 -0.42 1.18 16 32 H 0.34 8.55 6.23 -39.29 -0.24 8.31 16 LS Contribution 266.94 15.07 4.02 4.02 Total: -1.00 -28.91 266.94 -8.91 -37.82 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.37 Total: 6.61 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -3.59 Total: -23.91 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.05 Total: -41.15 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.91 -8.91 -37.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238549086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.126 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds