Wall clock time and date at job start Mon Mar 30 2020 02:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00488 * 2 1 4 4 H 1.48509 * 109.46916 * 269.99668 * 3 2 1 5 5 H 1.48500 * 109.47225 * 29.99305 * 3 2 1 6 6 H 1.48495 * 109.47517 * 149.99681 * 3 2 1 7 7 C 1.37880 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00024 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.33195 * 299.20217 * 9 7 2 11 11 C 1.54905 * 110.37570 * 176.82442 * 9 7 2 12 12 C 1.55144 * 101.65300 * 204.10154 * 11 9 7 13 13 C 1.54315 * 103.01994 * 35.65515 * 12 11 9 14 14 H 1.08996 * 109.89065 * 97.12213 * 13 12 11 15 15 C 1.50703 * 109.88836 * 218.31295 * 13 12 11 16 16 C 1.38232 * 119.99840 * 78.94883 * 15 13 12 17 17 C 1.38239 * 119.99657 * 179.78988 * 16 15 13 18 18 C 1.38237 * 119.99910 * 0.44158 * 17 16 15 19 19 C 1.38243 * 120.00057 * 359.81026 * 18 17 16 20 20 C 1.38235 * 119.99786 * 359.97438 * 19 18 17 21 21 N 1.47451 * 107.23237 * 337.71369 * 13 12 11 22 22 H 0.97000 * 119.99624 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.99033 * 322.19310 * 11 9 7 24 24 H 1.09004 * 110.99001 * 85.97201 * 11 9 7 25 25 H 1.09000 * 110.70164 * 154.03828 * 12 11 9 26 26 H 1.08997 * 110.70209 * 277.09390 * 12 11 9 27 27 H 1.07993 * 120.00768 * 359.97438 * 16 15 13 28 28 H 1.08000 * 120.00416 * 180.27715 * 17 16 15 29 29 H 1.08004 * 120.00204 * 179.83962 * 18 17 16 30 30 H 1.07999 * 119.99615 * 180.02562 * 19 18 17 31 31 H 1.07996 * 119.99610 * 179.97438 * 20 19 18 32 32 H 1.00898 * 110.99919 * 236.74324 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6293 -2.5777 0.8925 11 6 2.2369 -3.6913 -0.0793 12 6 1.3391 -4.8003 -0.6884 13 6 0.4356 -4.0187 -1.6652 14 1 0.8402 -4.0814 -2.6754 15 6 -0.9617 -4.5821 -1.6334 16 6 -1.8190 -4.2463 -0.6023 17 6 -3.1023 -4.7596 -0.5754 18 6 -3.5251 -5.6160 -1.5748 19 6 -2.6660 -5.9559 -2.6032 20 6 -1.3843 -5.4390 -2.6324 21 7 0.4204 -2.6140 -1.2172 22 1 -0.4849 0.8401 -0.0004 23 1 3.0747 -3.4616 -0.7376 24 1 2.5888 -3.9740 0.9129 25 1 1.9423 -5.5334 -1.2240 26 1 0.7452 -5.2843 0.0868 27 1 -1.4873 -3.5806 0.1807 28 1 -3.7736 -4.4938 0.2277 29 1 -4.5269 -6.0192 -1.5525 30 1 -2.9966 -6.6246 -3.3841 31 1 -0.7131 -5.7049 -3.4355 32 1 -0.5226 -2.3003 -1.0427 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238549086.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:50 Heat of formation + Delta-G solvation = 3.168882 kcal Electronic energy + Delta-G solvation = -14301.197541 eV Core-core repulsion = 12032.156235 eV Total energy + Delta-G solvation = -2269.041307 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66972 -38.47506 -34.66055 -32.52094 -31.80943 -30.51137 -29.21588 -26.24430 -23.56320 -23.13244 -21.46550 -20.93944 -18.32644 -18.11932 -16.69990 -16.55926 -16.06251 -15.66202 -15.20329 -14.40368 -14.24580 -14.13684 -13.58798 -13.54369 -13.19505 -12.82844 -12.67510 -12.43470 -12.36102 -11.92696 -11.83818 -11.59832 -11.30425 -11.03091 -10.55896 -9.79422 -9.67359 -8.68153 -8.08042 -6.17963 0.48755 0.52565 1.42421 1.44283 1.53338 2.46631 2.90218 3.20434 3.80355 3.97619 4.02151 4.16646 4.18207 4.26630 4.32180 4.49324 4.63215 4.70710 4.84271 4.87175 5.04336 5.13407 5.14944 5.20903 5.28425 5.55343 5.61363 5.63920 5.79670 5.83624 6.16272 6.29412 6.58248 7.00989 7.04182 7.51558 9.01682 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.041530 B = 0.007935 C = 0.007163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.053158 B = 3527.642857 C = 3908.050771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.023 3.977 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.526 4.526 8 H 0.053 0.947 9 C 0.204 3.796 10 H -0.029 1.029 11 C -0.118 4.118 12 C -0.119 4.119 13 C 0.103 3.897 14 H 0.077 0.923 15 C -0.100 4.100 16 C -0.137 4.137 17 C -0.125 4.125 18 C -0.128 4.128 19 C -0.118 4.118 20 C -0.124 4.124 21 N -0.670 5.670 22 H 0.259 0.741 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.686 -11.828 -3.582 13.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.782 3.218 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.097 3.903 10 H -0.011 1.011 11 C -0.156 4.156 12 C -0.158 4.158 13 C -0.007 4.007 14 H 0.095 0.905 15 C -0.101 4.101 16 C -0.155 4.155 17 C -0.143 4.143 18 C -0.146 4.146 19 C -0.136 4.136 20 C -0.142 4.142 21 N -0.301 5.301 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.150 0.850 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.155 0.845 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.320 -11.473 -4.018 12.901 hybrid contribution -0.209 0.919 0.910 1.310 sum -4.530 -10.554 -3.107 11.898 Atomic orbital electron populations 1.69988 1.07233 1.27068 1.51016 1.25722 0.95644 1.02276 0.94058 0.85599 0.78758 0.79458 0.77937 1.20578 1.21004 1.19217 1.21415 0.92661 0.91772 1.50662 0.92844 1.19846 0.90308 0.93440 0.86723 1.01093 1.22677 0.98077 0.94951 0.99893 1.22751 0.97429 0.97423 0.98150 1.21463 0.91034 0.88900 0.99297 0.90482 1.20587 0.96340 0.97765 0.95409 1.21012 0.95408 1.00553 0.98560 1.21331 0.95130 0.97871 1.00003 1.21464 1.00925 0.97980 0.94263 1.21495 0.93188 0.99868 0.99012 1.21275 0.97371 0.97264 0.98291 1.62346 1.16514 1.15536 1.35683 0.93241 0.91995 0.91756 0.89335 0.92287 0.89064 0.85022 0.83222 0.82972 0.84502 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.21 12.45 21.45 0.27 -53.94 16 2 C 0.02 1.32 5.41 84.66 0.46 1.78 16 3 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.53 -30.16 8.78 25.60 0.22 -29.93 16 8 H 0.05 3.00 7.77 -2.91 -0.02 2.98 16 9 C 0.20 10.67 3.11 44.64 0.14 10.81 16 10 H -0.03 -1.64 8.14 -2.39 -0.02 -1.66 16 11 C -0.12 -4.98 6.46 31.98 0.21 -4.77 16 12 C -0.12 -4.28 6.45 31.78 0.20 -4.08 16 13 C 0.10 4.06 3.69 44.51 0.16 4.23 16 14 H 0.08 2.93 8.03 -2.39 -0.02 2.91 16 15 C -0.10 -3.53 4.73 -19.87 -0.09 -3.62 16 16 C -0.14 -5.02 8.68 22.27 0.19 -4.83 16 17 C -0.13 -3.71 10.05 22.27 0.22 -3.49 16 18 C -0.13 -3.10 10.05 22.27 0.22 -2.87 16 19 C -0.12 -2.78 10.05 22.27 0.22 -2.56 16 20 C -0.12 -3.51 9.68 22.27 0.22 -3.29 16 21 N -0.67 -33.35 6.41 -468.17 -3.00 -36.35 16 22 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 23 H 0.06 2.62 8.05 -2.39 -0.02 2.60 16 24 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.06 2.09 7.81 -2.39 -0.02 2.07 16 27 H 0.09 3.90 7.26 -2.91 -0.02 3.88 16 28 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 31 H 0.14 3.29 8.05 -2.91 -0.02 3.26 16 32 H 0.33 17.44 6.23 -89.70 -0.56 16.88 16 Total: -1.00 -63.91 266.94 2.22 -61.70 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.54 Total: 24.08 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 2.38 Total: -42.64 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -2.73 Total: -90.29 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -63.91 2.22 -61.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238549086.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.864 kcal (2) G-P(sol) polarization free energy of solvation -63.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds