Wall clock time and date at job start Mon Mar 30 2020 02:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00258 * 2 1 4 4 H 1.48501 * 109.47017 * 239.99641 * 3 2 1 5 5 H 1.48497 * 109.46921 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47200 * 119.99375 * 3 2 1 7 7 C 1.37881 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00007 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00297 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.32874 * 57.74451 * 9 7 2 11 11 C 1.54902 * 110.37754 * 180.02562 * 9 7 2 12 12 C 1.55134 * 101.65704 * 156.01081 * 11 9 7 13 13 C 1.54323 * 103.01707 * 324.34819 * 12 11 9 14 14 H 1.08999 * 109.88921 * 262.71213 * 13 12 11 15 15 C 1.50706 * 109.88877 * 141.68760 * 13 12 11 16 16 C 1.38228 * 119.99983 * 280.54324 * 15 13 12 17 17 C 1.38238 * 120.00110 * 180.21781 * 16 15 13 18 18 C 1.38234 * 119.99675 * 359.52133 * 17 16 15 19 19 C 1.38235 * 120.00220 * 0.28720 * 18 17 16 20 20 C 1.38234 * 119.99892 * 100.32544 * 15 13 12 21 21 N 1.47440 * 107.37269 * 22.20260 * 13 12 11 22 22 H 0.96999 * 119.99340 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.98889 * 37.91934 * 11 9 7 24 24 H 1.09004 * 111.02284 * 274.12104 * 11 9 7 25 25 H 1.08990 * 110.71059 * 205.96586 * 12 11 9 26 26 H 1.09001 * 110.85727 * 82.79669 * 12 11 9 27 27 H 1.08004 * 120.00281 * 0.02562 * 16 15 13 28 28 H 1.08002 * 120.00519 * 179.80752 * 17 16 15 29 29 H 1.07999 * 120.00009 * 180.25939 * 18 17 16 30 30 H 1.07996 * 120.00471 * 179.97438 * 19 18 17 31 31 H 1.08001 * 120.00324 * 0.02562 * 20 15 13 32 32 H 1.00897 * 111.00366 * 123.33728 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.5896 -2.5546 -0.8641 11 6 2.2389 -3.6923 0.0018 12 6 1.3691 -4.8188 0.6194 13 6 0.5112 -4.0657 1.6578 14 1 0.9595 -4.1590 2.6470 15 6 -0.8866 -4.6290 1.6734 16 6 -1.7927 -4.2567 0.6982 17 6 -3.0761 -4.7699 0.7151 18 6 -3.4504 -5.6630 1.7016 19 6 -2.5431 -6.0384 2.6746 20 6 -1.2611 -5.5214 2.6604 21 7 0.4760 -2.6479 1.2548 22 1 -0.4849 0.8401 -0.0004 23 1 3.1058 -3.4808 0.6278 24 1 2.5454 -3.9474 -1.0127 25 1 1.9953 -5.5663 1.1062 26 1 0.7379 -5.2816 -0.1391 27 1 -1.4989 -3.5625 -0.0753 28 1 -3.7851 -4.4767 -0.0451 29 1 -4.4519 -6.0672 1.7124 30 1 -2.8356 -6.7358 3.4456 31 1 -0.5522 -5.8146 3.4207 32 1 -0.4738 -2.3297 1.1340 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238549852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:56 Heat of formation + Delta-G solvation = 19.885612 kcal Electronic energy + Delta-G solvation = -14291.555886 eV Core-core repulsion = 12023.239471 eV Total energy + Delta-G solvation = -2268.316415 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.31229 -36.92111 -32.67422 -31.01518 -30.60381 -28.80824 -27.51673 -24.36388 -22.26316 -21.81271 -19.69399 -19.38806 -16.79416 -16.25005 -15.20775 -14.93880 -14.40697 -14.25856 -13.65687 -13.08848 -12.94104 -12.32740 -12.21271 -11.67483 -11.41783 -11.36471 -10.91163 -10.81084 -10.59143 -10.48483 -10.32215 -10.00470 -9.38932 -9.10949 -8.60361 -8.48261 -8.35116 -6.86707 -5.96472 -3.98291 1.69119 1.71613 3.37473 3.41706 3.44821 4.11144 4.50080 5.14005 5.18184 5.27724 5.28123 5.44142 5.63502 5.72040 5.81500 5.86097 5.91056 6.18625 6.28295 6.34221 6.40586 6.50530 6.74533 6.77448 6.78359 6.82546 6.93685 7.15090 7.33412 7.49398 7.96272 8.27066 8.57875 8.92620 9.07140 9.67652 11.14934 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.041620 B = 0.007907 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.591287 B = 3540.159186 C = 3924.245512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.072 3.928 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.502 4.502 8 H 0.056 0.944 9 C 0.208 3.792 10 H 0.008 0.992 11 C -0.122 4.122 12 C -0.132 4.132 13 C 0.105 3.895 14 H 0.073 0.927 15 C -0.081 4.081 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.136 4.136 19 C -0.125 4.125 20 C -0.120 4.120 21 N -0.655 5.655 22 H 0.260 0.740 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.126 0.874 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 -10.354 2.423 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.130 4.130 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.541 4.541 8 H 0.074 0.926 9 C 0.102 3.898 10 H 0.026 0.974 11 C -0.160 4.160 12 C -0.170 4.170 13 C -0.006 4.006 14 H 0.091 0.909 15 C -0.082 4.082 16 C -0.131 4.131 17 C -0.136 4.136 18 C -0.154 4.154 19 C -0.143 4.143 20 C -0.139 4.139 21 N -0.288 5.288 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.144 0.856 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.724 -9.993 2.846 11.038 hybrid contribution -0.313 0.512 -0.531 0.801 sum -4.037 -9.482 2.315 10.562 Atomic orbital electron populations 1.69857 1.05996 1.26644 1.50322 1.24954 0.94793 0.98989 0.94295 0.86663 0.79582 0.83184 0.78457 1.20478 1.21469 1.20274 1.20987 0.92513 0.90084 1.50477 0.92559 1.20003 0.90274 0.92490 0.87050 0.97396 1.22759 0.98915 0.95449 0.98907 1.22819 0.98180 0.97990 0.98061 1.21457 0.89188 0.90981 0.98944 0.90932 1.20767 0.97318 0.95867 0.94237 1.21161 0.93358 0.99663 0.98883 1.21106 0.96278 0.97504 0.98718 1.21032 0.99246 0.99177 0.95918 1.21049 0.93976 1.00432 0.98826 1.21029 0.96234 0.97820 0.98772 1.62694 1.19046 1.10762 1.36271 0.93040 0.91769 0.92775 0.92436 0.92446 0.85601 0.86436 0.86746 0.86687 0.86419 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 12.67 55.43 0.70 -24.83 16 2 C 0.07 2.03 5.42 -17.82 -0.10 1.93 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.50 -13.97 8.77 -34.44 -0.30 -14.27 16 8 H 0.06 1.55 7.76 -52.48 -0.41 1.14 16 9 C 0.21 5.23 3.06 -67.15 -0.21 5.02 16 10 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 11 C -0.12 -2.56 6.46 -24.60 -0.16 -2.72 16 12 C -0.13 -2.42 6.46 -24.91 -0.16 -2.58 16 13 C 0.10 2.06 3.68 -67.87 -0.25 1.81 16 14 H 0.07 1.40 8.03 -51.93 -0.42 0.99 16 15 C -0.08 -1.44 4.72 -104.62 -0.49 -1.93 16 16 C -0.11 -2.01 8.70 -39.59 -0.34 -2.36 16 17 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 18 C -0.14 -1.86 10.05 -39.58 -0.40 -2.26 16 19 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 20 C -0.12 -1.85 9.68 -39.58 -0.38 -2.23 16 21 N -0.66 -15.70 6.54 -99.09 -0.65 -16.35 16 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.03 7.81 -51.93 -0.41 0.62 16 27 H 0.13 2.48 7.24 -52.48 -0.38 2.10 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.12 1.60 8.05 -52.49 -0.42 1.17 16 32 H 0.34 8.48 6.36 -39.29 -0.25 8.23 16 LS Contribution 267.35 15.07 4.03 4.03 Total: -1.00 -28.86 267.35 -8.90 -37.76 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.37 Total: 6.68 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -3.59 Total: -23.90 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.05 Total: -41.18 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.86 -8.90 -37.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238549852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.646 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds