Wall clock time and date at job start Mon Mar 30 2020 02:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00258 * 2 1 4 4 H 1.48501 * 109.47017 * 239.99641 * 3 2 1 5 5 H 1.48497 * 109.46921 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47200 * 119.99375 * 3 2 1 7 7 C 1.37881 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00007 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00297 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.32874 * 57.74451 * 9 7 2 11 11 C 1.54902 * 110.37754 * 180.02562 * 9 7 2 12 12 C 1.55134 * 101.65704 * 156.01081 * 11 9 7 13 13 C 1.54323 * 103.01707 * 324.34819 * 12 11 9 14 14 H 1.08999 * 109.88921 * 262.71213 * 13 12 11 15 15 C 1.50706 * 109.88877 * 141.68760 * 13 12 11 16 16 C 1.38228 * 119.99983 * 280.54324 * 15 13 12 17 17 C 1.38238 * 120.00110 * 180.21781 * 16 15 13 18 18 C 1.38234 * 119.99675 * 359.52133 * 17 16 15 19 19 C 1.38235 * 120.00220 * 0.28720 * 18 17 16 20 20 C 1.38234 * 119.99892 * 100.32544 * 15 13 12 21 21 N 1.47440 * 107.37269 * 22.20260 * 13 12 11 22 22 H 0.96999 * 119.99340 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.98889 * 37.91934 * 11 9 7 24 24 H 1.09004 * 111.02284 * 274.12104 * 11 9 7 25 25 H 1.08990 * 110.71059 * 205.96586 * 12 11 9 26 26 H 1.09001 * 110.85727 * 82.79669 * 12 11 9 27 27 H 1.08004 * 120.00281 * 0.02562 * 16 15 13 28 28 H 1.08002 * 120.00519 * 179.80752 * 17 16 15 29 29 H 1.07999 * 120.00009 * 180.25939 * 18 17 16 30 30 H 1.07996 * 120.00471 * 179.97438 * 19 18 17 31 31 H 1.08001 * 120.00324 * 0.02562 * 20 15 13 32 32 H 1.00897 * 111.00366 * 123.33728 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.5896 -2.5546 -0.8641 11 6 2.2389 -3.6923 0.0018 12 6 1.3691 -4.8188 0.6194 13 6 0.5112 -4.0657 1.6578 14 1 0.9595 -4.1590 2.6470 15 6 -0.8866 -4.6290 1.6734 16 6 -1.7927 -4.2567 0.6982 17 6 -3.0761 -4.7699 0.7151 18 6 -3.4504 -5.6630 1.7016 19 6 -2.5431 -6.0384 2.6746 20 6 -1.2611 -5.5214 2.6604 21 7 0.4760 -2.6479 1.2548 22 1 -0.4849 0.8401 -0.0004 23 1 3.1058 -3.4808 0.6278 24 1 2.5454 -3.9474 -1.0127 25 1 1.9953 -5.5663 1.1062 26 1 0.7379 -5.2816 -0.1391 27 1 -1.4989 -3.5625 -0.0753 28 1 -3.7851 -4.4767 -0.0451 29 1 -4.4519 -6.0672 1.7124 30 1 -2.8356 -6.7358 3.4456 31 1 -0.5522 -5.8146 3.4207 32 1 -0.4738 -2.3297 1.1340 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238549852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:55 Heat of formation + Delta-G solvation = 2.709378 kcal Electronic energy + Delta-G solvation = -14292.300704 eV Core-core repulsion = 12023.239471 eV Total energy + Delta-G solvation = -2269.061232 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.66760 -38.46278 -34.66657 -32.52146 -31.81307 -30.51472 -29.21567 -26.24451 -23.56312 -23.13429 -21.46671 -20.94125 -18.33512 -18.12051 -16.70116 -16.55414 -16.06700 -15.65924 -15.20211 -14.41046 -14.24460 -14.13028 -13.59394 -13.55339 -13.18205 -12.81945 -12.66381 -12.43858 -12.38951 -11.92695 -11.84438 -11.60593 -11.30438 -11.02408 -10.56369 -9.79591 -9.67699 -8.70559 -8.08531 -6.18628 0.48599 0.52408 1.42665 1.45309 1.52038 2.46500 2.90050 3.19523 3.80036 3.97661 4.02153 4.16618 4.18074 4.26200 4.31908 4.49067 4.63106 4.70510 4.84036 4.87147 5.04526 5.13321 5.14841 5.21304 5.28261 5.54955 5.61168 5.63866 5.79336 5.83136 6.16142 6.28826 6.58260 6.97978 7.02394 7.50849 9.00898 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.041620 B = 0.007907 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.591287 B = 3540.159186 C = 3924.245512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.022 3.978 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.204 3.796 10 H -0.027 1.027 11 C -0.118 4.118 12 C -0.119 4.119 13 C 0.103 3.897 14 H 0.078 0.922 15 C -0.100 4.100 16 C -0.137 4.137 17 C -0.125 4.125 18 C -0.128 4.128 19 C -0.118 4.118 20 C -0.123 4.123 21 N -0.671 5.671 22 H 0.259 0.741 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.137 0.863 32 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 -11.931 3.649 13.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.178 4.178 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.564 4.564 8 H 0.072 0.928 9 C 0.097 3.903 10 H -0.009 1.009 11 C -0.156 4.156 12 C -0.157 4.157 13 C -0.007 4.007 14 H 0.096 0.904 15 C -0.101 4.101 16 C -0.156 4.156 17 C -0.143 4.143 18 C -0.146 4.146 19 C -0.136 4.136 20 C -0.142 4.142 21 N -0.302 5.302 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.150 0.850 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.155 0.845 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.102 -11.587 4.074 12.949 hybrid contribution -0.256 0.941 -0.897 1.324 sum -4.357 -10.646 3.177 11.934 Atomic orbital electron populations 1.69995 1.07252 1.27192 1.51036 1.25738 0.95652 1.02333 0.94057 0.85650 0.78355 0.79087 0.78640 1.19530 1.21136 1.20013 1.21383 0.92685 0.91748 1.50595 0.92836 1.19900 0.90591 0.93384 0.86445 1.00884 1.22667 0.98195 0.94870 0.99858 1.22748 0.97769 0.97491 0.97733 1.21460 0.91187 0.88896 0.99168 0.90444 1.20592 0.96192 0.97649 0.95698 1.21018 0.95118 1.00494 0.98936 1.21330 0.95349 0.97793 0.99869 1.21460 1.00856 0.97690 0.94619 1.21495 0.92907 0.99957 0.99198 1.21278 0.97657 0.97053 0.98196 1.62516 1.18178 1.14217 1.35287 0.93206 0.91976 0.91751 0.89305 0.92308 0.89068 0.85048 0.83227 0.82961 0.84473 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.36 12.67 21.45 0.27 -54.09 16 2 C 0.02 1.27 5.42 84.66 0.46 1.73 16 3 Si 0.96 45.09 29.54 68.60 2.03 47.12 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.53 -30.08 8.77 25.60 0.22 -29.86 16 8 H 0.05 3.00 7.76 -2.91 -0.02 2.98 16 9 C 0.20 10.65 3.06 44.57 0.14 10.79 16 10 H -0.03 -1.53 8.14 -2.39 -0.02 -1.55 16 11 C -0.12 -4.97 6.46 31.98 0.21 -4.76 16 12 C -0.12 -4.27 6.46 31.77 0.21 -4.07 16 13 C 0.10 4.04 3.68 44.52 0.16 4.21 16 14 H 0.08 2.93 8.03 -2.39 -0.02 2.91 16 15 C -0.10 -3.53 4.72 -19.87 -0.09 -3.63 16 16 C -0.14 -5.03 8.70 22.27 0.19 -4.84 16 17 C -0.13 -3.72 10.05 22.27 0.22 -3.50 16 18 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 19 C -0.12 -2.77 10.05 22.27 0.22 -2.55 16 20 C -0.12 -3.49 9.68 22.27 0.22 -3.27 16 21 N -0.67 -33.31 6.54 -467.41 -3.05 -36.37 16 22 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 23 H 0.06 2.62 8.04 -2.39 -0.02 2.60 16 24 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 25 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.06 2.08 7.81 -2.39 -0.02 2.06 16 27 H 0.09 3.91 7.24 -2.91 -0.02 3.89 16 28 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 29 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 30 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 31 H 0.14 3.27 8.05 -2.91 -0.02 3.25 16 32 H 0.33 17.32 6.36 -89.70 -0.57 16.74 16 Total: -1.00 -63.88 267.35 2.15 -61.72 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 0.53 Total: 24.23 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 2.38 Total: -42.61 kcal Atomic # 7 Polarization: -87.68 SS G_CDS: -2.78 Total: -90.46 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -63.88 2.15 -61.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238549852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.433 kcal (2) G-P(sol) polarization free energy of solvation -63.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds