Wall clock time and date at job start Mon Mar 30 2020 02:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86799 * 120.00278 * 2 1 4 4 H 1.48498 * 109.47351 * 240.00329 * 3 2 1 5 5 H 1.48508 * 109.46817 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47109 * 120.00053 * 3 2 1 7 7 C 1.39948 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99613 * 168.01016 * 7 2 1 9 9 C 1.41389 * 120.00433 * 348.01435 * 7 2 1 10 10 C 1.40734 * 120.24308 * 330.82702 * 9 7 2 11 11 C 1.37601 * 119.74827 * 180.27297 * 10 9 7 12 12 C 1.38657 * 120.24674 * 359.97438 * 11 10 9 13 13 C 1.38615 * 120.50158 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24708 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.12412 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.28771 * 180.12280 * 15 14 13 17 17 C 1.54262 * 110.32764 * 302.24588 * 15 14 13 18 18 C 1.54383 * 105.05869 * 118.89636 * 17 15 14 19 19 N 1.48563 * 104.59405 * 23.85663 * 18 17 15 20 20 C 1.48556 * 104.22124 * 320.51471 * 19 18 17 21 21 H 0.97001 * 120.00384 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.12628 * 0.25437 * 10 9 7 23 23 H 1.07998 * 119.87474 * 179.97438 * 11 10 9 24 24 H 1.07995 * 119.74914 * 180.02562 * 12 11 10 25 25 H 1.07998 * 119.87518 * 179.97438 * 13 12 11 26 26 H 1.09000 * 110.32815 * 237.79315 * 17 15 14 27 27 H 1.09004 * 110.31959 * 0.02562 * 17 15 14 28 28 H 1.08996 * 110.40878 * 142.63581 * 18 17 15 29 29 H 1.08996 * 110.41418 * 264.95677 * 18 17 15 30 30 H 1.00893 * 111.00137 * 80.07466 * 19 18 17 31 31 H 1.09005 * 110.41264 * 280.70571 * 20 19 18 32 32 H 1.08995 * 110.41213 * 158.26420 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6963 1.2126 7 6 2.0079 -1.2120 -0.0005 8 1 3.0703 -1.2221 -0.1949 9 6 1.3241 -2.4233 0.2532 10 6 0.1785 -2.4328 1.0706 11 6 -0.4758 -3.6183 1.3154 12 6 -0.0107 -4.8004 0.7596 13 6 1.1166 -4.8029 -0.0470 14 6 1.7869 -3.6288 -0.3054 15 6 3.0125 -3.6348 -1.1822 16 1 3.4143 -2.6260 -1.2771 17 6 4.0811 -4.5848 -0.6031 18 6 4.2980 -5.6565 -1.6930 19 7 3.8758 -4.9972 -2.9556 20 6 2.6738 -4.2124 -2.5733 21 1 -0.4851 0.8400 0.0004 22 1 -0.1855 -1.5131 1.5044 23 1 -1.3548 -3.6280 1.9427 24 1 -0.5307 -5.7261 0.9567 25 1 1.4702 -5.7296 -0.4744 26 1 5.0079 -4.0428 -0.4154 27 1 3.7189 -5.0471 0.3152 28 1 5.3495 -5.9387 -1.7447 29 1 3.6797 -6.5318 -1.4939 30 1 4.6035 -4.3947 -3.3098 31 1 1.7997 -4.8609 -2.5131 32 1 2.5024 -3.4073 -3.2877 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238550846.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:27 Heat of formation + Delta-G solvation = 9.337604 kcal Electronic energy + Delta-G solvation = -14462.054711 eV Core-core repulsion = 12193.280900 eV Total energy + Delta-G solvation = -2268.773811 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.79123 -36.72235 -33.60085 -31.22536 -29.51515 -28.62039 -27.06140 -25.07847 -21.85213 -21.10266 -20.63920 -18.64232 -17.18706 -16.20906 -15.47772 -14.80509 -13.99821 -13.85412 -13.45656 -13.07276 -12.62442 -12.48165 -11.72506 -11.64690 -11.28149 -11.16679 -11.10072 -10.93018 -10.64480 -10.50732 -10.27401 -10.12610 -9.46222 -9.20891 -9.13798 -8.36530 -7.31833 -7.26641 -6.70009 -4.36140 2.79676 2.98160 3.05943 3.08346 3.22981 3.93583 4.65809 4.71037 5.30786 5.41784 5.55943 5.75470 5.95604 5.98687 6.12086 6.22414 6.31480 6.40723 6.46396 6.53426 6.71340 6.79259 6.85047 7.12900 7.17299 7.27096 7.39882 7.63316 7.68525 7.92406 8.04148 8.09484 8.31724 8.63480 8.90769 8.98053 10.24421 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.025436 B = 0.011303 C = 0.008497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.543622 B = 2476.563256 C = 3294.556006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.116 3.884 10 C -0.157 4.157 11 C -0.112 4.112 12 C -0.236 4.236 13 C -0.090 4.090 14 C -0.177 4.177 15 C -0.060 4.060 16 H 0.083 0.917 17 C -0.150 4.150 18 C 0.040 3.960 19 N -0.676 5.676 20 C 0.048 3.952 21 H 0.279 0.721 22 H 0.117 0.883 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.330 0.670 31 H 0.078 0.922 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.016 -3.407 -1.466 6.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.114 3.886 10 C -0.176 4.176 11 C -0.130 4.130 12 C -0.255 4.255 13 C -0.109 4.109 14 C -0.179 4.179 15 C -0.080 4.080 16 H 0.101 0.899 17 C -0.189 4.189 18 C -0.090 4.090 19 N -0.301 5.301 20 C -0.082 4.082 21 H 0.090 0.910 22 H 0.135 0.865 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.144 0.856 31 H 0.097 0.903 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.472 -3.831 -1.833 6.167 hybrid contribution 0.572 1.588 0.616 1.797 sum 5.044 -2.243 -1.217 5.653 Atomic orbital electron populations 1.69785 1.07385 1.29025 1.36650 1.25849 0.94762 1.01013 0.92502 0.86407 0.80081 0.80609 0.79822 1.19118 1.20391 1.18986 1.19464 0.96011 0.90533 1.43515 0.90523 1.17468 0.91317 0.91571 0.88285 1.21332 0.98864 0.96427 1.00968 1.20702 0.98654 0.93609 1.00042 1.20380 1.00995 0.96511 1.07653 1.20316 0.95856 0.96032 0.98664 1.19490 0.99807 0.93915 1.04654 1.21157 0.93796 0.99190 0.93886 0.89866 1.23031 0.98776 0.97332 0.99749 1.22984 0.99584 0.97711 0.88695 1.63369 1.08270 1.31400 1.27097 1.23175 0.93656 0.96086 0.95245 0.90992 0.86510 0.89589 0.89685 0.89504 0.92601 0.91065 0.91847 0.90853 0.85613 0.90331 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.75 10.93 55.55 0.61 -20.14 16 2 C 0.08 1.87 5.23 -17.34 -0.09 1.78 16 3 Si 0.91 18.66 29.58 -169.99 -5.03 13.63 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.47 -12.00 8.24 -37.74 -0.31 -12.31 16 8 H 0.08 1.90 6.39 -52.48 -0.34 1.56 16 9 C 0.12 3.02 5.54 -106.83 -0.59 2.42 16 10 C -0.16 -4.07 8.66 -38.87 -0.34 -4.41 16 11 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 12 C -0.24 -5.33 10.05 -39.29 -0.39 -5.73 16 13 C -0.09 -2.01 8.07 -39.66 -0.32 -2.33 16 14 C -0.18 -4.12 4.81 -103.91 -0.50 -4.61 16 15 C -0.06 -1.20 3.12 -90.39 -0.28 -1.48 16 16 H 0.08 1.76 5.81 -51.93 -0.30 1.46 16 17 C -0.15 -2.54 6.40 -25.35 -0.16 -2.71 16 18 C 0.04 0.59 7.47 -2.18 -0.02 0.58 16 19 N -0.68 -10.56 7.62 -109.66 -0.84 -11.40 16 20 C 0.05 0.86 6.92 -2.18 -0.02 0.85 16 21 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 22 H 0.12 3.14 6.29 -52.49 -0.33 2.81 16 23 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 24 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 25 H 0.09 1.75 7.76 -52.49 -0.41 1.35 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.07 1.28 7.29 -51.93 -0.38 0.90 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.33 4.60 8.92 -39.30 -0.35 4.25 16 31 H 0.08 1.51 6.94 -51.93 -0.36 1.15 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 260.38 15.07 3.92 3.92 Total: -1.00 -26.57 260.38 -8.89 -35.46 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.14 Total: 9.53 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: -3.42 Total: -31.00 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: -0.23 Total: -31.54 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.57 -8.89 -35.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238550846.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.798 kcal (2) G-P(sol) polarization free energy of solvation -26.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds