Wall clock time and date at job start Mon Mar 30 2020 02:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86808 * 119.99778 * 2 1 4 4 H 1.48503 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47160 * 299.99814 * 3 2 1 6 6 H 1.48501 * 109.47075 * 59.99927 * 3 2 1 7 7 C 1.39951 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99696 * 197.86951 * 7 2 1 9 9 C 1.41393 * 119.99750 * 17.85947 * 7 2 1 10 10 C 1.40715 * 120.24303 * 24.39275 * 9 7 2 11 11 C 1.37612 * 119.74441 * 179.97438 * 10 9 7 12 12 C 1.38637 * 120.24890 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.74906 * 180.02562 * 12 11 10 14 14 H 1.08995 * 110.78452 * 3.24950 * 13 12 11 15 15 C 1.54603 * 110.72280 * 239.99955 * 13 12 11 16 16 C 1.53995 * 105.22420 * 219.73609 * 15 13 12 17 17 N 1.47894 * 107.05995 * 358.72543 * 16 15 13 18 18 C 1.48540 * 105.82282 * 25.33190 * 17 16 15 19 19 C 1.38632 * 120.50163 * 0.27927 * 12 11 10 20 20 C 1.37617 * 120.24547 * 359.44308 * 19 12 11 21 21 H 0.97002 * 120.00595 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.12940 * 359.97438 * 10 9 7 23 23 H 1.08003 * 119.87696 * 180.02562 * 11 10 9 24 24 H 1.08999 * 110.30767 * 100.77170 * 15 13 12 25 25 H 1.08996 * 110.30527 * 338.70190 * 15 13 12 26 26 H 1.08999 * 109.91722 * 118.07884 * 16 15 13 27 27 H 1.08996 * 109.91479 * 239.17265 * 16 15 13 28 28 H 1.00902 * 111.00595 * 145.84480 * 17 16 15 29 29 H 1.08998 * 110.66642 * 79.22449 * 18 17 16 30 30 H 1.09000 * 110.67019 * 202.19326 * 18 17 16 31 31 H 1.08003 * 119.87853 * 179.70557 * 19 12 11 32 32 H 1.08001 * 120.12841 * 180.27454 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8833 2.3965 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2345 0.2864 9 6 1.3522 -2.4068 -0.3766 10 6 0.2211 -2.3616 -1.2124 11 6 -0.4090 -3.5308 -1.5725 12 6 0.0670 -4.7500 -1.1154 13 6 -0.6313 -6.0236 -1.5172 14 1 -1.4482 -5.8154 -2.2081 15 6 -1.1475 -6.7808 -0.2720 16 6 -0.8804 -8.2690 -0.5641 17 7 -0.2778 -8.3451 -1.9126 18 6 0.3718 -7.0289 -2.1408 19 6 1.1774 -4.8062 -0.2873 20 6 1.8267 -3.6500 0.0809 21 1 -0.4851 0.8400 0.0004 22 1 -0.1512 -1.4129 -1.5700 23 1 -1.2770 -3.4986 -2.2143 24 1 -2.2153 -6.6070 -0.1393 25 1 -0.6001 -6.4654 0.6162 26 1 -0.1893 -8.6743 0.1749 27 1 -1.8171 -8.8258 -0.5408 28 1 0.3956 -9.0947 -1.9660 29 1 1.3324 -6.9800 -1.6281 30 1 0.4963 -6.8411 -3.2072 31 1 1.5368 -5.7611 0.0668 32 1 2.6942 -3.6963 0.7226 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259458872.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:28 Heat of formation + Delta-G solvation = -8.805772 kcal Electronic energy + Delta-G solvation = -14019.947024 eV Core-core repulsion = 11750.386457 eV Total energy + Delta-G solvation = -2269.560566 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.22901 -38.44935 -35.58383 -32.78556 -31.23556 -30.35727 -29.43881 -26.49397 -23.44550 -22.51858 -22.12919 -20.68464 -19.22199 -17.63634 -17.04751 -16.74254 -15.72194 -15.26695 -15.17111 -14.50598 -14.19425 -13.80886 -13.65374 -13.60049 -13.10346 -12.96944 -12.72972 -12.65168 -12.33991 -12.09964 -11.85866 -11.56152 -11.32169 -11.15158 -10.96861 -9.48034 -9.34987 -9.15267 -8.64061 -6.32702 0.94911 1.12910 1.37432 1.49455 1.52921 2.20455 2.70383 3.38016 3.67473 3.86429 4.06281 4.22101 4.36578 4.45791 4.50562 4.57634 4.74194 4.86754 4.96209 5.03526 5.07149 5.15557 5.24509 5.26095 5.40301 5.48255 5.70792 5.80758 6.00977 6.10359 6.26519 6.38653 6.49134 6.70516 6.94352 7.03922 8.33339 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.074055 B = 0.006258 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.008848 B = 4472.955960 C = 4580.722671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.503 4.503 8 H 0.073 0.927 9 C 0.075 3.925 10 C -0.188 4.188 11 C -0.104 4.104 12 C -0.188 4.188 13 C -0.029 4.029 14 H 0.072 0.928 15 C -0.126 4.126 16 C 0.044 3.956 17 N -0.677 5.677 18 C 0.049 3.951 19 C -0.083 4.083 20 C -0.241 4.241 21 H 0.288 0.712 22 H 0.099 0.901 23 H 0.104 0.896 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.346 0.654 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 -8.898 -1.491 9.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.532 4.532 8 H 0.092 0.908 9 C 0.072 3.928 10 C -0.208 4.208 11 C -0.122 4.122 12 C -0.190 4.190 13 C -0.048 4.048 14 H 0.090 0.910 15 C -0.164 4.164 16 C -0.085 4.085 17 N -0.307 5.307 18 C -0.080 4.080 19 C -0.101 4.101 20 C -0.261 4.261 21 H 0.098 0.902 22 H 0.117 0.883 23 H 0.122 0.878 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.162 0.838 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.298 -8.648 -1.856 8.940 hybrid contribution 1.052 0.999 0.759 1.637 sum -0.246 -7.649 -1.097 7.731 Atomic orbital electron populations 1.69882 1.09050 1.30444 1.36039 1.26759 0.95472 1.04534 0.91213 0.85167 0.79396 0.76203 0.78970 1.18214 1.18848 1.19007 1.19847 0.98297 0.92659 1.42413 0.90847 1.17979 0.92098 0.93129 0.89549 1.21270 1.00227 0.97049 1.02242 1.20850 0.98854 0.92685 0.99855 1.19300 1.00063 0.93601 1.06028 1.20692 0.96475 0.91253 0.96390 0.90990 1.22537 1.01549 0.94676 0.97672 1.22644 1.00334 0.95845 0.89650 1.63037 1.34847 1.04784 1.28054 1.23086 0.95466 0.88690 1.00721 1.20529 0.95482 0.96456 0.97605 1.21165 1.04267 0.93272 1.07370 0.90188 0.88294 0.87750 0.91114 0.92271 0.93266 0.89542 0.83775 0.94058 0.90365 0.87097 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.27 10.95 21.83 0.24 -44.03 16 2 C 0.03 1.78 5.14 85.26 0.44 2.22 16 3 Si 0.98 38.85 29.60 68.60 2.03 40.88 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.50 -27.79 9.05 23.46 0.21 -27.58 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 9 C 0.07 4.13 5.58 -21.29 -0.12 4.01 16 10 C -0.19 -10.15 8.70 22.73 0.20 -9.95 16 11 C -0.10 -4.89 9.66 22.22 0.21 -4.67 16 12 C -0.19 -7.92 4.96 -19.67 -0.10 -8.01 16 13 C -0.03 -0.97 3.28 -10.27 -0.03 -1.00 16 14 H 0.07 2.42 7.94 -2.39 -0.02 2.40 16 15 C -0.13 -3.70 6.41 31.48 0.20 -3.50 16 16 C 0.04 1.05 7.52 86.45 0.65 1.70 16 17 N -0.68 -16.63 7.51 -501.90 -3.77 -20.40 16 18 C 0.05 1.44 6.93 86.71 0.60 2.04 16 19 C -0.08 -3.58 8.13 22.22 0.18 -3.40 16 20 C -0.24 -12.03 9.80 22.73 0.22 -11.81 16 21 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 22 H 0.10 5.59 6.15 -2.91 -0.02 5.57 16 23 H 0.10 4.42 7.97 -2.91 -0.02 4.39 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 1.87 7.12 -2.39 -0.02 1.85 16 26 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.35 6.87 8.92 -89.69 -0.80 6.07 16 29 H 0.04 1.23 6.73 -2.39 -0.02 1.21 16 30 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.11 4.15 7.23 -2.91 -0.02 4.13 16 32 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -58.88 263.43 1.48 -57.40 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.31 Total: 26.13 kcal Atomic # 6 Polarization: -62.63 SS G_CDS: 2.67 Total: -59.96 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -3.53 Total: -64.44 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -58.88 1.48 -57.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259458872.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.590 kcal (2) G-P(sol) polarization free energy of solvation -58.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds