Wall clock time and date at job start Mon Mar 30 2020 02:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32563 * 1 3 3 C 1.50701 * 120.00133 * 2 1 4 4 C 1.47809 * 119.99775 * 179.97438 * 2 1 3 5 5 C 1.39561 * 120.14071 * 115.00665 * 4 2 1 6 6 C 1.37954 * 119.85687 * 180.02562 * 5 4 2 7 7 C 1.38364 * 120.14311 * 0.02562 * 6 5 4 8 8 C 1.38327 * 120.28627 * 359.97243 * 7 6 5 9 9 C 1.50695 * 119.92848 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.47019 * 200.00088 * 9 8 7 11 11 N 1.46897 * 109.47200 * 319.99957 * 9 8 7 12 12 C 1.50704 * 109.47278 * 80.00281 * 9 8 7 13 13 H 1.07997 * 119.99847 * 354.43867 * 12 9 8 14 14 C 1.37873 * 119.99828 * 174.44149 * 12 9 8 15 15 N 1.31519 * 119.99759 * 163.57511 * 14 12 9 16 16 Si 1.86800 * 120.00413 * 343.57182 * 14 12 9 17 17 H 1.48497 * 109.47442 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47548 * 300.00459 * 16 14 12 19 19 H 1.48505 * 109.46934 * 60.00450 * 16 14 12 20 20 C 1.37991 * 120.14102 * 0.25844 * 8 7 6 21 21 H 1.08002 * 120.00387 * 180.02562 * 1 2 3 22 22 H 1.08005 * 120.00174 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.47220 * 269.99979 * 3 2 1 24 24 H 1.09007 * 109.46753 * 29.99880 * 3 2 1 25 25 H 1.08998 * 109.47003 * 149.99157 * 3 2 1 26 26 H 1.08001 * 120.07086 * 359.97438 * 5 4 2 27 27 H 1.07994 * 119.92993 * 179.97438 * 6 5 4 28 28 H 1.07994 * 119.85970 * 180.02562 * 7 6 5 29 29 H 1.00900 * 111.00083 * 65.85151 * 11 9 8 30 30 H 1.00904 * 111.00158 * 189.80667 * 11 9 8 31 31 H 0.96997 * 120.00118 * 354.63948 * 15 14 12 32 32 H 1.08002 * 120.07265 * 179.73970 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0792 1.3051 0.0000 4 6 2.0646 -1.2801 0.0006 5 6 2.8568 -1.6324 -1.0930 6 6 3.5436 -2.8288 -1.0865 7 6 3.4479 -3.6790 0.0009 8 6 2.6644 -3.3357 1.0880 9 6 2.5655 -4.2680 2.2678 10 1 1.6710 -4.0312 2.8440 11 7 2.4876 -5.6551 1.7906 12 6 3.7831 -4.1047 3.1406 13 1 4.5928 -3.4641 2.8236 14 6 3.8635 -4.7731 4.3438 15 7 5.0239 -4.8990 4.9499 16 14 2.3242 -5.4998 5.1133 17 1 2.6767 -6.1622 6.3947 18 1 1.3403 -4.4174 5.3692 19 1 1.7319 -6.4982 4.1872 20 6 1.9687 -2.1441 1.0919 21 1 -0.5401 -0.9353 0.0004 22 1 -0.5401 0.9353 -0.0004 23 1 2.2608 1.6197 -1.0276 24 1 1.4900 2.0648 0.5139 25 1 3.0315 1.1748 0.5140 26 1 2.9314 -0.9702 -1.9430 27 1 4.1567 -3.1028 -1.9324 28 1 3.9878 -4.6143 0.0013 29 1 3.3452 -5.9297 1.3354 30 1 2.2612 -6.2851 2.5456 31 1 5.8342 -4.5909 4.5149 32 1 1.3540 -1.8791 1.9394 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259929629.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:04 Heat of formation + Delta-G solvation = 28.818000 kcal Electronic energy + Delta-G solvation = -13993.166192 eV Core-core repulsion = 11725.237115 eV Total energy + Delta-G solvation = -2267.929077 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.92991 -35.67337 -34.15006 -31.87515 -30.09068 -29.08108 -27.07198 -25.77113 -22.79121 -22.27658 -20.24153 -18.06868 -17.62517 -16.21549 -15.21841 -14.82836 -14.34746 -13.91810 -13.66852 -13.28616 -13.09222 -12.92492 -12.41201 -12.18283 -11.85183 -11.60768 -11.46686 -11.36486 -10.68641 -10.31385 -10.17893 -9.98761 -9.30953 -9.05399 -8.55103 -8.22778 -7.94483 -7.55444 -6.51120 -4.26303 1.77088 2.06914 2.45532 3.24213 3.34128 3.50443 4.34645 4.41065 4.92311 5.11245 5.21549 5.45590 5.53510 5.59808 5.65787 5.77006 5.91541 6.00001 6.03135 6.10408 6.29852 6.39974 6.64819 6.72740 6.84626 6.86957 7.08301 7.14011 7.45557 7.63701 7.80053 8.19074 8.36643 8.49486 8.79749 9.44698 10.77276 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.033734 B = 0.008124 C = 0.007579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.813818 B = 3445.656152 C = 3693.450596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.077 4.077 3 C -0.114 4.114 4 C -0.064 4.064 5 C -0.133 4.133 6 C -0.125 4.125 7 C -0.106 4.106 8 C -0.015 4.015 9 C 0.210 3.790 10 H 0.042 0.958 11 N -0.857 5.857 12 C -0.625 4.625 13 H 0.058 0.942 14 C 0.033 3.967 15 N -0.897 5.897 16 Si 1.043 2.957 17 H -0.283 1.283 18 H -0.281 1.281 19 H -0.274 1.274 20 C -0.111 4.111 21 H 0.099 0.901 22 H 0.098 0.902 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.328 0.672 30 H 0.329 0.671 31 H 0.270 0.730 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.259 6.570 -9.527 13.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.077 4.077 3 C -0.171 4.171 4 C -0.064 4.064 5 C -0.151 4.151 6 C -0.143 4.143 7 C -0.124 4.124 8 C -0.016 4.016 9 C 0.100 3.900 10 H 0.059 0.941 11 N -0.388 5.388 12 C -0.664 4.664 13 H 0.076 0.924 14 C -0.173 4.173 15 N -0.530 5.530 16 Si 0.871 3.129 17 H -0.209 1.209 18 H -0.207 1.207 19 H -0.201 1.201 20 C -0.130 4.130 21 H 0.117 0.883 22 H 0.117 0.883 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.080 0.920 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.419 6.045 -8.617 12.878 hybrid contribution 1.518 0.714 -0.635 1.794 sum -5.901 6.759 -9.252 12.888 Atomic orbital electron populations 1.24052 0.94702 1.01691 1.02583 1.20546 0.94460 0.93450 0.99284 1.20824 1.00486 0.93954 1.01829 1.18818 0.98626 0.93806 0.95113 1.20892 0.98989 0.97384 0.97859 1.20960 1.00055 0.94832 0.98467 1.20956 0.98924 0.99353 0.93187 1.20036 0.92520 0.94225 0.94813 1.18305 0.96963 0.85239 0.89471 0.94060 1.59745 1.40012 1.04842 1.34205 1.22606 1.04171 1.32547 1.07097 0.92387 1.25837 1.02455 0.94751 0.94289 1.70822 0.98601 1.42570 1.41044 0.84027 0.75148 0.77018 0.76739 1.20870 1.20749 1.20095 1.21073 1.00520 0.94108 0.97302 0.88292 0.88333 0.91587 0.91817 0.91590 0.87154 0.86931 0.86540 0.86094 0.85692 0.92002 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 13.94 28.82 0.40 -2.14 16 2 C -0.08 -1.13 5.44 -102.62 -0.56 -1.69 16 3 C -0.11 -1.38 10.02 36.01 0.36 -1.02 16 4 C -0.06 -1.11 5.30 -105.01 -0.56 -1.67 16 5 C -0.13 -2.20 9.77 -39.19 -0.38 -2.59 16 6 C -0.13 -2.15 10.03 -39.64 -0.40 -2.55 16 7 C -0.11 -2.11 9.30 -39.50 -0.37 -2.48 16 8 C -0.02 -0.33 4.89 -104.68 -0.51 -0.85 16 9 C 0.21 5.01 2.48 -70.02 -0.17 4.83 16 10 H 0.04 1.01 6.67 -51.93 -0.35 0.66 16 11 N -0.86 -18.88 8.94 -6.65 -0.06 -18.93 16 12 C -0.62 -17.22 8.95 -34.44 -0.31 -17.53 16 13 H 0.06 1.76 7.99 -52.49 -0.42 1.35 16 14 C 0.03 0.93 5.43 -17.82 -0.10 0.83 16 15 N -0.90 -26.91 13.70 55.43 0.76 -26.15 16 16 Si 1.04 24.32 26.54 -169.99 -4.51 19.81 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.27 -5.81 5.55 56.52 0.31 -5.49 16 20 C -0.11 -2.24 9.33 -39.19 -0.37 -2.61 16 21 H 0.10 1.34 8.05 -52.49 -0.42 0.92 16 22 H 0.10 1.06 8.05 -52.48 -0.42 0.64 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.66 8.07 -51.93 -0.42 0.25 16 25 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 26 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.12 2.27 6.78 -52.49 -0.36 1.92 16 29 H 0.33 7.00 7.53 -39.29 -0.30 6.70 16 30 H 0.33 7.22 5.69 -39.29 -0.22 6.99 16 31 H 0.27 8.12 8.73 -40.82 -0.36 7.76 16 32 H 0.12 2.27 8.03 -52.49 -0.42 1.85 16 LS Contribution 271.79 15.07 4.10 4.10 Total: -1.00 -29.40 271.79 -6.93 -36.33 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -4.26 Total: 14.30 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: -2.96 Total: -29.45 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.70 Total: -45.08 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -4.51 Total: 19.81 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.40 -6.93 -36.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259929629.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.146 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds