Wall clock time and date at job start Mon Mar 30 2020 03:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.68427 * 2 1 4 4 C 1.54608 * 110.76497 * 236.53072 * 2 1 3 5 5 C 1.51637 * 102.69471 * 267.37963 * 4 2 1 6 6 C 1.36145 * 131.42502 * 163.80305 * 5 4 2 7 7 C 1.40892 * 119.87690 * 180.25132 * 6 5 4 8 8 C 1.41138 * 120.30190 * 180.12286 * 7 6 5 9 9 H 1.07994 * 120.00283 * 24.49466 * 8 7 6 10 10 C 1.39874 * 119.99935 * 204.48978 * 8 7 6 11 11 N 1.30899 * 119.99944 * 17.94147 * 10 8 7 12 12 Si 1.86799 * 119.99908 * 197.94838 * 10 8 7 13 13 H 1.48501 * 109.47209 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47262 * 119.99875 * 12 10 8 15 15 H 1.48502 * 109.47096 * 239.99949 * 12 10 8 16 16 C 1.40901 * 119.39276 * 0.10592 * 7 6 5 17 17 C 1.36114 * 120.02987 * 359.73775 * 16 7 6 18 18 C 1.39678 * 107.81688 * 343.79277 * 5 4 2 19 19 N 1.39299 * 110.90988 * 359.51426 * 18 5 4 20 20 C 1.46903 * 110.99955 * 256.27701 * 19 18 5 21 21 H 1.09001 * 109.46689 * 298.19210 * 1 2 3 22 22 H 1.09001 * 109.46874 * 58.18403 * 1 2 3 23 23 H 1.09002 * 109.47489 * 178.18805 * 1 2 3 24 24 H 1.09002 * 110.76584 * 25.67785 * 4 2 1 25 25 H 1.08993 * 110.76529 * 148.89007 * 4 2 1 26 26 H 1.08000 * 120.05886 * 0.26237 * 6 5 4 27 27 H 0.96999 * 119.99752 * 179.97438 * 11 10 8 28 28 H 1.07999 * 119.98718 * 179.76610 * 16 7 6 29 29 H 1.07994 * 119.74241 * 180.02562 * 17 16 7 30 30 H 1.08996 * 109.47404 * 180.24531 * 20 19 18 31 31 H 1.08996 * 109.46945 * 60.23691 * 20 19 18 32 32 H 1.09007 * 109.46577 * 300.24619 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9150 1.0197 0.0000 4 6 2.0781 -0.7973 -1.2059 5 6 2.2595 -2.1886 -0.6309 6 6 2.4311 -3.3971 -1.2338 7 6 2.5733 -4.5589 -0.4494 8 6 2.7543 -5.8160 -1.0650 9 1 3.1720 -5.8754 -2.0591 10 6 2.3926 -6.9850 -0.3874 11 7 1.5818 -6.9227 0.6383 12 14 3.0669 -8.6350 -0.9462 13 1 3.9549 -8.4352 -2.1196 14 1 3.8398 -9.2543 0.1603 15 1 1.9416 -9.5273 -1.3240 16 6 2.5335 -4.4541 0.9551 17 6 2.3644 -3.2382 1.5430 18 6 2.2277 -2.0830 0.7615 19 7 2.0542 -0.7583 1.1559 20 6 3.3178 -0.1818 1.6344 21 1 -0.3633 0.4855 0.9058 22 1 -0.3633 0.5418 -0.8733 23 1 -0.3634 -1.0271 -0.0325 24 1 1.3563 -0.8077 -2.0226 25 1 3.0310 -0.3867 -1.5397 26 1 2.4584 -3.4651 -2.3113 27 1 1.3307 -7.7335 1.1079 28 1 2.6377 -5.3389 1.5656 29 1 2.3350 -3.1632 2.6199 30 1 3.1531 0.8514 1.9399 31 1 4.0566 -0.2106 0.8336 32 1 3.6813 -0.7587 2.4849 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260023346.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:56 Heat of formation + Delta-G solvation = 25.245548 kcal Electronic energy + Delta-G solvation = -14373.790530 eV Core-core repulsion = 12105.706540 eV Total energy + Delta-G solvation = -2268.083990 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.68390 -36.12465 -33.20624 -31.81667 -29.56487 -29.23730 -25.92405 -25.73396 -23.80077 -20.76276 -20.09242 -19.46901 -17.03029 -15.41776 -15.24287 -14.77879 -14.40933 -13.72551 -13.31792 -12.70627 -12.62890 -12.15620 -12.13685 -11.95622 -11.61897 -11.38697 -11.21823 -10.99379 -10.73123 -10.67060 -10.52718 -10.27319 -9.82971 -9.39293 -9.07213 -8.22544 -7.45369 -6.87306 -6.73072 -4.29186 2.70943 3.03361 3.07223 3.12331 3.16170 3.92646 4.51682 4.60834 5.25454 5.49682 5.53492 5.65754 5.79484 5.91956 6.01924 6.13349 6.17596 6.27341 6.35261 6.41045 6.42873 6.66994 6.87711 7.04959 7.15356 7.24687 7.46253 7.51390 7.71499 8.04744 8.15039 8.20361 8.36769 8.64396 8.88164 9.00373 10.17837 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.052971 B = 0.007652 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.461188 B = 3658.273058 C = 3805.120553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.078 3.922 3 H 0.073 0.927 4 C -0.103 4.103 5 C -0.103 4.103 6 C -0.200 4.200 7 C 0.109 3.891 8 C -0.459 4.459 9 H 0.078 0.922 10 C 0.075 3.925 11 N -0.792 5.792 12 Si 0.907 3.093 13 H -0.261 1.261 14 H -0.272 1.272 15 H -0.275 1.275 16 C -0.158 4.158 17 C -0.079 4.079 18 C -0.055 4.055 19 N -0.480 5.480 20 C 0.030 3.970 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.280 0.720 28 H 0.122 0.878 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.021 0.979 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 6.939 -0.331 7.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.030 4.030 3 H 0.091 0.909 4 C -0.141 4.141 5 C -0.106 4.106 6 C -0.220 4.220 7 C 0.107 3.893 8 C -0.489 4.489 9 H 0.096 0.904 10 C -0.143 4.143 11 N -0.417 5.417 12 Si 0.732 3.268 13 H -0.184 1.184 14 H -0.197 1.197 15 H -0.200 1.200 16 C -0.178 4.178 17 C -0.099 4.099 18 C -0.150 4.150 19 N -0.199 5.199 20 C -0.117 4.117 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.140 0.860 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.437 6.851 0.285 6.871 hybrid contribution 0.765 -0.861 -0.831 1.420 sum 1.203 5.991 -0.546 6.134 Atomic orbital electron populations 1.21635 0.94147 1.02466 1.00584 1.22451 0.95971 0.95994 0.88616 0.90866 1.21635 1.00177 0.94171 0.98162 1.20165 1.02529 0.93432 0.94436 1.20009 1.12627 0.91743 0.97607 1.17534 0.88158 0.91943 0.91701 1.19516 1.36876 0.90208 1.02268 0.90431 1.25909 0.92791 1.01460 0.94097 1.69869 1.23821 1.30858 1.17151 0.86277 0.79680 0.81039 0.79826 1.18425 1.19680 1.19996 1.20879 1.06084 0.95607 0.95200 1.19856 1.01990 0.91090 0.96979 1.18798 1.15571 0.88449 0.92191 1.59958 1.25498 1.01169 1.33267 1.22410 0.90971 0.98741 0.99530 0.92575 0.92930 0.92020 0.91180 0.91921 0.89254 0.90898 0.86033 0.89372 0.92663 0.96082 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.49 37.16 0.35 -1.71 16 2 C 0.08 1.33 3.31 -66.35 -0.22 1.11 16 3 H 0.07 1.08 7.76 -51.93 -0.40 0.68 16 4 C -0.10 -1.92 6.52 -26.58 -0.17 -2.09 16 5 C -0.10 -2.39 6.16 -104.38 -0.64 -3.03 16 6 C -0.20 -5.03 9.74 -39.33 -0.38 -5.41 16 7 C 0.11 2.94 5.58 -106.78 -0.60 2.35 16 8 C -0.46 -12.23 9.04 -37.87 -0.34 -12.58 16 9 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 10 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 11 N -0.79 -20.51 10.96 55.54 0.61 -19.90 16 12 Si 0.91 18.64 29.60 -169.99 -5.03 13.60 16 13 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 14 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 15 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 16 C -0.16 -4.16 8.64 -39.34 -0.34 -4.50 16 17 C -0.08 -1.94 10.01 -39.63 -0.40 -2.33 16 18 C -0.05 -1.27 5.54 -83.22 -0.46 -1.73 16 19 N -0.48 -9.49 4.97 -169.16 -0.84 -10.34 16 20 C 0.03 0.52 9.28 60.07 0.56 1.07 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.07 1.21 7.92 -51.93 -0.41 0.80 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 27 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 28 H 0.12 3.28 6.15 -52.49 -0.32 2.95 16 29 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 30 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 266.39 15.07 4.01 4.01 Total: -1.00 -27.82 266.39 -8.47 -36.29 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.49 Total: 3.38 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -2.73 Total: -27.05 kcal Atomic # 7 Polarization: -30.01 SS G_CDS: -0.23 Total: -30.24 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.82 -8.47 -36.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260023346.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.534 kcal (2) G-P(sol) polarization free energy of solvation -27.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds