Wall clock time and date at job start Mon Mar 30 2020 03:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.68427 * 2 1 4 4 C 1.54608 * 110.76497 * 236.53072 * 2 1 3 5 5 C 1.51637 * 102.69471 * 267.37963 * 4 2 1 6 6 C 1.36145 * 131.42502 * 163.80305 * 5 4 2 7 7 C 1.40892 * 119.87690 * 180.25132 * 6 5 4 8 8 C 1.41138 * 120.30190 * 180.12286 * 7 6 5 9 9 H 1.07994 * 120.00283 * 24.49466 * 8 7 6 10 10 C 1.39874 * 119.99935 * 204.48978 * 8 7 6 11 11 N 1.30899 * 119.99944 * 17.94147 * 10 8 7 12 12 Si 1.86799 * 119.99908 * 197.94838 * 10 8 7 13 13 H 1.48501 * 109.47209 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47262 * 119.99875 * 12 10 8 15 15 H 1.48502 * 109.47096 * 239.99949 * 12 10 8 16 16 C 1.40901 * 119.39276 * 0.10592 * 7 6 5 17 17 C 1.36114 * 120.02987 * 359.73775 * 16 7 6 18 18 C 1.39678 * 107.81688 * 343.79277 * 5 4 2 19 19 N 1.39299 * 110.90988 * 359.51426 * 18 5 4 20 20 C 1.46903 * 110.99955 * 256.27701 * 19 18 5 21 21 H 1.09001 * 109.46689 * 298.19210 * 1 2 3 22 22 H 1.09001 * 109.46874 * 58.18403 * 1 2 3 23 23 H 1.09002 * 109.47489 * 178.18805 * 1 2 3 24 24 H 1.09002 * 110.76584 * 25.67785 * 4 2 1 25 25 H 1.08993 * 110.76529 * 148.89007 * 4 2 1 26 26 H 1.08000 * 120.05886 * 0.26237 * 6 5 4 27 27 H 0.96999 * 119.99752 * 179.97438 * 11 10 8 28 28 H 1.07999 * 119.98718 * 179.76610 * 16 7 6 29 29 H 1.07994 * 119.74241 * 180.02562 * 17 16 7 30 30 H 1.08996 * 109.47404 * 180.24531 * 20 19 18 31 31 H 1.08996 * 109.46945 * 60.23691 * 20 19 18 32 32 H 1.09007 * 109.46577 * 300.24619 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9150 1.0197 0.0000 4 6 2.0781 -0.7973 -1.2059 5 6 2.2595 -2.1886 -0.6309 6 6 2.4311 -3.3971 -1.2338 7 6 2.5733 -4.5589 -0.4494 8 6 2.7543 -5.8160 -1.0650 9 1 3.1720 -5.8754 -2.0591 10 6 2.3926 -6.9850 -0.3874 11 7 1.5818 -6.9227 0.6383 12 14 3.0669 -8.6350 -0.9462 13 1 3.9549 -8.4352 -2.1196 14 1 3.8398 -9.2543 0.1603 15 1 1.9416 -9.5273 -1.3240 16 6 2.5335 -4.4541 0.9551 17 6 2.3644 -3.2382 1.5430 18 6 2.2277 -2.0830 0.7615 19 7 2.0542 -0.7583 1.1559 20 6 3.3178 -0.1818 1.6344 21 1 -0.3633 0.4855 0.9058 22 1 -0.3633 0.5418 -0.8733 23 1 -0.3634 -1.0271 -0.0325 24 1 1.3563 -0.8077 -2.0226 25 1 3.0310 -0.3867 -1.5397 26 1 2.4584 -3.4651 -2.3113 27 1 1.3307 -7.7335 1.1079 28 1 2.6377 -5.3389 1.5656 29 1 2.3350 -3.1632 2.6199 30 1 3.1531 0.8514 1.9399 31 1 4.0566 -0.2106 0.8336 32 1 3.6813 -0.7587 2.4849 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260023346.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:56 Heat of formation + Delta-G solvation = 9.837099 kcal Electronic energy + Delta-G solvation = -14374.458691 eV Core-core repulsion = 12105.706540 eV Total energy + Delta-G solvation = -2268.752151 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.33314 -37.93407 -35.07177 -33.36617 -31.21684 -31.06976 -27.61351 -27.31308 -25.43614 -22.48988 -21.94027 -21.07161 -18.93556 -17.12688 -16.96838 -16.40195 -15.95717 -15.44780 -14.83623 -14.43312 -14.22201 -13.77233 -13.64960 -13.55998 -13.34481 -12.92621 -12.84139 -12.61126 -12.39267 -12.17078 -12.06832 -11.86024 -11.56045 -11.22950 -10.96364 -9.92230 -9.37164 -8.71609 -8.56126 -6.27645 0.88453 1.09431 1.37767 1.47990 1.53478 2.20378 2.66795 3.07090 3.64608 3.85927 4.05902 4.21740 4.42630 4.47730 4.55878 4.67018 4.79620 4.89058 4.93851 4.98048 4.99013 5.07823 5.13671 5.24838 5.40112 5.43157 5.61177 5.73790 5.93580 6.11369 6.24677 6.43474 6.51307 6.72295 6.91799 7.08144 8.32496 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.052971 B = 0.007652 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.461188 B = 3658.273058 C = 3805.120553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.078 3.922 3 H 0.111 0.889 4 C -0.099 4.099 5 C -0.115 4.115 6 C -0.218 4.218 7 C 0.078 3.922 8 C -0.497 4.497 9 H 0.075 0.925 10 C 0.034 3.966 11 N -0.825 5.825 12 Si 0.984 3.016 13 H -0.258 1.258 14 H -0.263 1.263 15 H -0.265 1.265 16 C -0.178 4.178 17 C -0.093 4.093 18 C -0.046 4.046 19 N -0.493 5.493 20 C 0.031 3.969 21 H 0.067 0.933 22 H 0.082 0.918 23 H 0.025 0.975 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.289 0.711 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.019 0.981 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 8.634 -0.642 8.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.030 4.030 3 H 0.129 0.871 4 C -0.137 4.137 5 C -0.118 4.118 6 C -0.238 4.238 7 C 0.075 3.925 8 C -0.526 4.526 9 H 0.093 0.907 10 C -0.181 4.181 11 N -0.451 5.451 12 Si 0.804 3.196 13 H -0.182 1.182 14 H -0.188 1.188 15 H -0.190 1.190 16 C -0.198 4.198 17 C -0.113 4.113 18 C -0.142 4.142 19 N -0.212 5.212 20 C -0.115 4.115 21 H 0.086 0.914 22 H 0.101 0.899 23 H 0.045 0.955 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.037 0.963 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.558 8.576 -0.023 8.594 hybrid contribution 0.685 -1.212 -0.683 1.551 sum 1.243 7.364 -0.706 7.502 Atomic orbital electron populations 1.21649 0.93376 1.00821 1.02684 1.22688 0.96620 0.97139 0.86506 0.87064 1.21733 1.01630 0.91229 0.99154 1.20696 1.00976 0.94998 0.95090 1.20189 1.13391 0.92451 0.97800 1.17873 0.89275 0.93027 0.92306 1.19750 1.38739 0.91317 1.02812 0.90706 1.26783 0.92375 1.04971 0.93937 1.69920 1.24608 1.32372 1.18238 0.85136 0.79063 0.75916 0.79437 1.18187 1.18764 1.18966 1.20801 1.07964 0.95930 0.95132 1.20030 1.02162 0.91280 0.97812 1.19053 1.13030 0.89904 0.92192 1.59947 1.27080 0.99701 1.34465 1.22465 0.89481 1.00466 0.99124 0.91449 0.89882 0.95526 0.89807 0.90196 0.88997 0.90086 0.87633 0.88260 0.88990 0.96259 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.49 71.98 0.68 -2.95 16 2 C 0.08 2.37 3.31 45.28 0.15 2.52 16 3 H 0.11 2.63 7.76 -2.39 -0.02 2.61 16 4 C -0.10 -3.41 6.52 30.69 0.20 -3.21 16 5 C -0.12 -5.28 6.16 -19.70 -0.12 -5.40 16 6 C -0.22 -11.27 9.74 22.43 0.22 -11.05 16 7 C 0.08 4.37 5.58 -21.27 -0.12 4.25 16 8 C -0.50 -27.58 9.04 23.38 0.21 -27.37 16 9 H 0.07 4.01 7.91 -2.91 -0.02 3.99 16 10 C 0.03 1.75 5.14 85.23 0.44 2.19 16 11 N -0.83 -44.21 10.96 21.82 0.24 -43.97 16 12 Si 0.98 38.82 29.60 68.60 2.03 40.85 16 13 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 14 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 15 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 16 C -0.18 -9.82 8.64 22.43 0.19 -9.63 16 17 C -0.09 -4.64 10.01 22.24 0.22 -4.42 16 18 C -0.05 -2.11 5.54 38.76 0.21 -1.90 16 19 N -0.49 -18.24 4.97 -689.10 -3.43 -21.66 16 20 C 0.03 0.95 9.28 127.69 1.18 2.14 16 21 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.08 2.65 7.92 -2.39 -0.02 2.63 16 25 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.09 4.53 8.06 -2.91 -0.02 4.50 16 27 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 28 H 0.11 6.02 6.15 -2.91 -0.02 6.01 16 29 H 0.10 4.58 8.06 -2.91 -0.02 4.55 16 30 H 0.09 2.16 8.10 -2.39 -0.02 2.14 16 31 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -61.95 266.39 3.41 -58.54 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 1.09 Total: 21.08 kcal Atomic # 6 Polarization: -58.31 SS G_CDS: 3.48 Total: -54.83 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -3.19 Total: -65.64 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -61.95 3.41 -58.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260023346.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.376 kcal (2) G-P(sol) polarization free energy of solvation -61.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds