Wall clock time and date at job start Mon Mar 30 2020 02:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38169 * 119.84633 * 2 1 4 4 C 1.38262 * 120.16059 * 180.02562 * 3 2 1 5 5 C 1.38069 * 119.91402 * 359.95167 * 4 3 2 6 6 C 1.39037 * 120.03020 * 359.97438 * 5 4 3 7 7 C 1.38454 * 119.84691 * 179.97438 * 2 1 3 8 8 C 1.50601 * 118.93556 * 0.14025 * 7 2 1 9 9 C 1.52860 * 110.48321 * 200.63523 * 8 7 2 10 10 H 1.08996 * 109.57000 * 68.46681 * 9 8 7 11 11 C 1.50700 * 109.67870 * 188.78030 * 9 8 7 12 12 H 1.08002 * 119.99705 * 359.43152 * 11 9 8 13 13 C 1.37868 * 119.99994 * 179.42573 * 11 9 8 14 14 N 1.31511 * 120.00297 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99920 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47372 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46826 * 120.00605 * 15 13 11 18 18 H 1.48504 * 109.47400 * 240.00078 * 15 13 11 19 19 C 1.53425 * 108.84895 * 308.65499 * 9 8 7 20 20 N 1.39950 * 119.12295 * 180.37715 * 6 5 4 21 21 H 1.09002 * 109.46861 * 270.02268 * 1 2 3 22 22 H 1.09004 * 109.46710 * 30.02045 * 1 2 3 23 23 H 1.09000 * 109.47420 * 150.01591 * 1 2 3 24 24 H 1.07994 * 119.91974 * 0.02562 * 3 2 1 25 25 H 1.08004 * 120.04995 * 179.97438 * 4 3 2 26 26 H 1.07998 * 119.99049 * 179.97438 * 5 4 3 27 27 H 1.09006 * 109.29940 * 80.33064 * 8 7 2 28 28 H 1.08989 * 109.13495 * 320.84435 * 8 7 2 29 29 H 0.96998 * 120.00417 * 179.97438 * 14 13 11 30 30 H 1.09002 * 109.79429 * 182.78444 * 19 9 8 31 31 H 1.09000 * 109.79529 * 303.57414 * 19 9 8 32 32 H 0.97000 * 120.56320 * 13.21761 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.1984 0.0000 4 6 3.5772 1.2060 -0.0005 5 6 4.2724 0.0131 -0.0001 6 6 3.5826 -1.1942 0.0015 7 6 2.1961 -1.2009 0.0005 8 6 1.4155 -2.4888 -0.0021 9 6 2.2833 -3.6412 0.5035 10 1 2.4892 -3.5047 1.5651 11 6 1.5638 -4.9485 0.2928 12 1 0.5786 -4.9575 -0.1495 13 6 2.1633 -6.1330 0.6647 14 7 3.3629 -6.1221 1.2038 15 14 1.2712 -7.7535 0.4043 16 1 -0.0539 -7.4952 -0.2141 17 1 2.0748 -8.6223 -0.4929 18 1 1.0839 -8.4314 1.7122 19 6 3.6027 -3.6486 -0.2794 20 7 4.3062 -2.3920 0.0100 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8899 -0.5142 23 1 -0.3634 -0.8901 -0.5136 24 1 1.6509 2.1315 0.0004 25 1 4.1129 2.1438 -0.0010 26 1 5.3523 0.0175 -0.0009 27 1 1.0832 -2.7066 -1.0172 28 1 0.5462 -2.3810 0.6463 29 1 3.7845 -6.9554 1.4658 30 1 4.2136 -4.4950 0.0348 31 1 3.3978 -3.7179 -1.3477 32 1 5.2563 -2.3930 0.2057 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260074233.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:18 Heat of formation + Delta-G solvation = 8.824522 kcal Electronic energy + Delta-G solvation = -14402.422221 eV Core-core repulsion = 12133.626161 eV Total energy + Delta-G solvation = -2268.796060 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40252 -35.84258 -33.69402 -32.41735 -30.01045 -29.26914 -26.36429 -24.92145 -23.65624 -21.67021 -20.55753 -18.54468 -16.60491 -16.05757 -15.38568 -14.83945 -14.41565 -13.87285 -13.43395 -13.01142 -12.71506 -12.50922 -12.19566 -12.09375 -11.74573 -11.59428 -11.02529 -10.99774 -10.74891 -10.45426 -10.22025 -9.99593 -9.26083 -9.22769 -8.89194 -8.42259 -7.89797 -6.56299 -6.09366 -4.15560 1.99152 2.25251 3.24991 3.33587 3.37612 4.33686 4.43406 4.45211 5.22852 5.38589 5.41441 5.68534 5.77348 5.88643 6.01099 6.16342 6.22784 6.35287 6.47584 6.51252 6.60586 6.88112 6.91173 7.01276 7.03911 7.14203 7.33679 7.52190 7.54781 7.81528 7.91101 8.15160 8.40842 8.64990 8.89056 9.49894 10.96822 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.045570 B = 0.008316 C = 0.007191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.295941 B = 3366.358827 C = 3892.857959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.052 4.052 3 C -0.192 4.192 4 C -0.085 4.085 5 C -0.215 4.215 6 C 0.230 3.770 7 C -0.144 4.144 8 C -0.065 4.065 9 C 0.036 3.964 10 H 0.032 0.968 11 C -0.511 4.511 12 H 0.060 0.940 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.120 3.880 20 N -0.747 5.747 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.261 0.739 30 H 0.107 0.893 31 H 0.031 0.969 32 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.457 9.509 -2.300 9.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.052 4.052 3 C -0.212 4.212 4 C -0.104 4.104 5 C -0.238 4.238 6 C 0.124 3.876 7 C -0.149 4.149 8 C -0.102 4.102 9 C 0.017 3.983 10 H 0.050 0.950 11 C -0.550 4.550 12 H 0.078 0.922 13 C -0.141 4.141 14 N -0.532 5.532 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.003 4.003 20 N -0.373 5.373 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.125 0.875 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.125 0.875 31 H 0.050 0.950 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.434 9.163 -2.282 9.453 hybrid contribution 0.107 -0.874 0.010 0.881 sum -0.327 8.289 -2.272 8.601 Atomic orbital electron populations 1.20789 0.92078 1.02185 1.01893 1.19599 0.95296 0.92334 0.98016 1.20528 0.94024 0.96642 1.10045 1.20637 0.94061 0.96642 0.99033 1.20568 0.98770 0.91598 1.12860 1.17743 0.90970 0.86448 0.92395 1.19562 0.91902 0.95700 1.07729 1.20490 0.97815 0.91417 1.00438 1.18945 0.91412 0.92132 0.95850 0.95004 1.21200 1.02564 0.90579 1.40620 0.92213 1.25007 0.95018 0.99286 0.94770 1.69846 1.14248 1.27004 1.42083 0.86495 0.79911 0.83524 0.77865 1.19688 1.20986 1.20985 1.22038 0.96925 0.84059 0.97263 1.45255 1.10077 1.05046 1.76944 0.91558 0.92332 0.91273 0.87478 0.87254 0.87222 0.92353 0.92207 0.92879 0.87499 0.95039 0.77860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 9.18 36.01 0.33 -1.33 16 2 C -0.05 -0.91 5.88 -104.57 -0.62 -1.53 16 3 C -0.19 -3.10 9.68 -39.60 -0.38 -3.48 16 4 C -0.08 -1.35 10.05 -39.63 -0.40 -1.74 16 5 C -0.21 -3.73 9.88 -39.35 -0.39 -4.12 16 6 C 0.23 4.63 6.48 -83.70 -0.54 4.09 16 7 C -0.14 -2.94 5.76 -104.44 -0.60 -3.54 16 8 C -0.06 -1.40 3.92 -28.00 -0.11 -1.51 16 9 C 0.04 0.89 2.27 -91.62 -0.21 0.69 16 10 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 11 C -0.51 -13.69 8.56 -34.44 -0.29 -13.98 16 12 H 0.06 1.58 7.75 -52.49 -0.41 1.17 16 13 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 14 N -0.89 -24.66 11.32 55.43 0.63 -24.03 16 15 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.12 2.82 6.19 -3.61 -0.02 2.80 16 20 N -0.75 -15.26 5.80 -58.10 -0.34 -15.60 16 21 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 23 H 0.07 1.04 6.77 -51.93 -0.35 0.68 16 24 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 25 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 26 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 28 H 0.06 1.25 7.10 -51.94 -0.37 0.88 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.11 2.71 6.05 -51.93 -0.31 2.40 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.39 6.98 8.86 -40.82 -0.36 6.62 16 LS Contribution 260.76 15.07 3.93 3.93 Total: -1.00 -27.86 260.76 -8.44 -36.30 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.32 Total: 5.85 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -3.33 Total: -22.15 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.29 Total: -39.63 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.86 -8.44 -36.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074233.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.124 kcal (2) G-P(sol) polarization free energy of solvation -27.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds