Wall clock time and date at job start Mon Mar 30 2020 03:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47082 * 2 1 4 4 C 1.50703 * 109.46927 * 119.99762 * 2 1 3 5 5 H 1.07999 * 120.00449 * 119.99827 * 4 2 1 6 6 C 1.37878 * 120.00004 * 300.00062 * 4 2 1 7 7 N 1.31522 * 119.99674 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00186 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47176 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47179 * 120.00470 * 8 6 4 11 11 H 1.48500 * 109.47000 * 240.00139 * 8 6 4 12 12 C 1.50695 * 109.47373 * 239.99604 * 2 1 3 13 13 C 1.38678 * 120.41675 * 120.25658 * 12 2 1 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 2 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 C 1.50702 * 119.61830 * 179.97438 * 15 14 13 17 17 C 1.53001 * 117.49585 * 343.76538 * 16 15 14 18 18 C 1.52998 * 117.49599 * 275.10829 * 16 15 14 19 19 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 20 20 C 1.31889 * 121.72235 * 0.02562 * 19 15 14 21 21 H 1.09000 * 109.46653 * 60.00190 * 1 2 3 22 22 H 1.09002 * 109.47082 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47305 * 300.00615 * 1 2 3 24 24 H 0.97005 * 119.99532 * 179.97438 * 7 6 4 25 25 H 1.07994 * 120.78944 * 359.96926 * 13 12 2 26 26 H 1.07998 * 120.42047 * 179.77106 * 14 13 12 27 27 H 1.08996 * 115.54854 * 129.43694 * 16 15 14 28 28 H 1.08993 * 117.50100 * 0.02562 * 17 16 15 29 29 H 1.09009 * 117.49604 * 145.02170 * 17 16 15 30 30 H 1.09005 * 117.49744 * 214.97589 * 18 16 15 31 31 H 1.08996 * 117.50025 * 359.97154 * 18 16 15 32 32 H 1.08002 * 119.61237 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2393 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 3.1463 -2.2868 3.6040 10 1 3.1463 -0.1872 4.8167 11 1 1.1658 -1.5864 4.8161 12 6 2.0324 -0.7105 -1.2304 13 6 2.8346 -0.0464 -2.1462 14 6 3.2693 -0.7383 -3.2661 15 6 2.8957 -2.0592 -3.4288 16 6 3.3619 -2.8209 -4.6427 17 6 3.9048 -2.0092 -5.8205 18 6 2.5350 -2.6847 -5.9228 19 7 2.1361 -2.6604 -2.5343 20 6 1.7043 -2.0334 -1.4573 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.7080 1.1610 3.4843 25 1 3.1103 0.9864 -1.9929 26 1 3.8922 -0.2516 -4.0019 27 1 3.8237 -3.7877 -4.4423 28 1 3.9252 -0.9243 -5.7173 29 1 4.7237 -2.4422 -6.3953 30 1 2.4532 -3.5618 -6.5648 31 1 1.6536 -2.0445 -5.8868 32 1 1.0833 -2.5588 -0.7469 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260074841.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:14 Heat of formation + Delta-G solvation = 29.708101 kcal Electronic energy + Delta-G solvation = -13931.715720 eV Core-core repulsion = 11663.825241 eV Total energy + Delta-G solvation = -2267.890480 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.27988 -38.10595 -36.29811 -33.72172 -32.69888 -30.09925 -27.24870 -25.46112 -24.59204 -23.08813 -22.40609 -21.20709 -18.46806 -17.69492 -17.23059 -16.71875 -15.87370 -15.61316 -15.14089 -14.72304 -14.35040 -14.08608 -13.79071 -13.33411 -12.91101 -12.83857 -12.71317 -12.33831 -12.22572 -12.15749 -11.53569 -11.47820 -11.28976 -11.10570 -10.58440 -10.52218 -10.16069 -9.43165 -8.12985 -6.27050 0.31826 0.46883 1.39319 1.42202 1.53143 2.41215 2.77740 3.05572 3.15231 3.38966 3.90749 4.00588 4.11169 4.18530 4.31524 4.36554 4.38703 4.67789 4.81219 4.87180 4.93954 4.97950 5.12700 5.16519 5.20981 5.30099 5.36642 5.43083 5.58341 5.88018 5.91711 6.03861 6.30134 6.80427 7.16653 7.41394 8.91675 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.052921 B = 0.006590 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.960223 B = 4247.962279 C = 4408.763419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.077 3.923 3 H 0.013 0.987 4 C -0.524 4.524 5 H 0.047 0.953 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.954 3.046 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.277 1.277 12 C -0.106 4.106 13 C -0.095 4.095 14 C -0.162 4.162 15 C 0.119 3.881 16 C -0.124 4.124 17 C -0.152 4.152 18 C -0.162 4.162 19 N -0.502 5.502 20 C 0.092 3.908 21 H 0.025 0.975 22 H 0.031 0.969 23 H 0.063 0.937 24 H 0.263 0.737 25 H 0.140 0.860 26 H 0.163 0.837 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.585 -3.399 -13.870 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.058 3.942 3 H 0.031 0.969 4 C -0.562 4.562 5 H 0.066 0.934 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.204 1.204 11 H -0.203 1.203 12 C -0.108 4.108 13 C -0.120 4.120 14 C -0.181 4.181 15 C -0.019 4.019 16 C -0.143 4.143 17 C -0.189 4.189 18 C -0.200 4.200 19 N -0.211 5.211 20 C -0.064 4.064 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.158 0.842 26 H 0.180 0.820 27 H 0.135 0.865 28 H 0.123 0.877 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.102 0.898 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.264 -4.163 -13.855 15.082 hybrid contribution 0.211 0.620 1.552 1.684 sum 4.476 -3.543 -12.303 13.562 Atomic orbital electron populations 1.21641 0.97168 0.99325 0.99904 1.17684 0.93247 0.94162 0.89088 0.96893 1.21355 1.31338 1.12317 0.91168 0.93444 1.25665 0.95138 0.95637 1.01635 1.70003 1.37297 1.23881 1.24112 0.85569 0.78258 0.78640 0.79590 1.19715 1.20442 1.20300 1.21408 0.96666 0.95759 0.97004 1.21780 0.95863 1.00914 0.93481 1.22138 1.01903 0.95181 0.98880 1.20782 0.94357 0.91917 0.94821 1.20741 1.06501 1.00856 0.86169 1.23215 0.97450 0.99895 0.98385 1.23023 0.95297 1.03801 0.97837 1.67361 1.11245 1.39576 1.02928 1.22446 0.98098 0.92101 0.93800 0.95644 0.94990 0.91817 0.92755 0.84177 0.81984 0.86464 0.87747 0.85862 0.86597 0.89836 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.79 71.98 0.63 -5.32 16 2 C 0.08 3.89 2.49 -12.29 -0.03 3.86 16 3 H 0.01 0.70 7.93 -2.39 -0.02 0.68 16 4 C -0.52 -28.76 8.26 25.60 0.21 -28.55 16 5 H 0.05 2.64 7.61 -2.91 -0.02 2.62 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.91 -51.79 11.32 21.45 0.24 -51.55 16 8 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 C -0.11 -4.67 4.74 -19.77 -0.09 -4.77 16 13 C -0.09 -3.51 9.81 22.47 0.22 -3.29 16 14 C -0.16 -5.05 9.36 22.36 0.21 -4.84 16 15 C 0.12 3.98 6.46 42.55 0.27 4.25 16 16 C -0.12 -3.07 6.22 -11.54 -0.07 -3.14 16 17 C -0.15 -2.60 9.80 30.62 0.30 -2.30 16 18 C -0.16 -3.22 10.24 30.62 0.31 -2.91 16 19 N -0.50 -19.98 10.27 -183.88 -1.89 -21.87 16 20 C 0.09 3.95 9.90 84.67 0.84 4.79 16 21 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.03 1.48 7.41 -2.39 -0.02 1.46 16 23 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 24 H 0.26 14.13 8.31 -92.70 -0.77 13.35 16 25 H 0.14 4.70 8.00 -2.91 -0.02 4.68 16 26 H 0.16 3.72 6.25 -2.91 -0.02 3.71 16 27 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.10 1.66 6.39 -2.39 -0.02 1.65 16 29 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.14 6.28 7.59 -2.91 -0.02 6.25 16 Total: -1.00 -61.52 270.09 4.73 -56.79 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 1.10 Total: 11.80 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 3.25 Total: -40.75 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -1.65 Total: -73.41 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -61.52 4.73 -56.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074841.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.495 kcal (2) G-P(sol) polarization free energy of solvation -61.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds