Wall clock time and date at job start Mon Mar 30 2020 02:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38248 * 119.69286 * 2 1 4 4 C 1.38405 * 118.84053 * 180.13528 * 3 2 1 5 5 C 1.39190 * 118.86742 * 0.02562 * 4 3 2 6 6 C 1.37591 * 119.18125 * 359.72969 * 5 4 3 7 7 N 1.31512 * 119.69818 * 179.97438 * 2 1 3 8 8 C 1.50720 * 122.33546 * 180.58155 * 6 5 4 9 9 C 1.52722 * 110.57949 * 341.95592 * 8 6 5 10 10 C 1.53315 * 108.45466 * 51.29045 * 9 8 6 11 11 C 1.50500 * 117.97476 * 179.40230 * 5 4 3 12 12 H 1.09000 * 109.23021 * 282.84338 * 11 5 4 13 13 C 1.50690 * 109.26111 * 42.31239 * 11 5 4 14 14 H 1.07996 * 120.00688 * 36.12705 * 13 11 5 15 15 C 1.37881 * 119.99763 * 216.12924 * 13 11 5 16 16 N 1.31513 * 120.00364 * 5.72111 * 15 13 11 17 17 Si 1.86803 * 119.99905 * 185.72064 * 15 13 11 18 18 H 1.48502 * 109.47250 * 90.00007 * 17 15 13 19 19 H 1.48504 * 109.46976 * 210.00170 * 17 15 13 20 20 H 1.48498 * 109.47330 * 329.99821 * 17 15 13 21 21 H 1.09006 * 109.46491 * 90.00309 * 1 2 3 22 22 H 1.09002 * 109.47150 * 209.99777 * 1 2 3 23 23 H 1.08994 * 109.47406 * 330.00100 * 1 2 3 24 24 H 1.07993 * 120.57740 * 0.15730 * 3 2 1 25 25 H 1.07999 * 120.56574 * 179.75121 * 4 3 2 26 26 H 1.09003 * 109.25695 * 102.23718 * 8 6 5 27 27 H 1.09001 * 109.25549 * 221.70620 * 8 6 5 28 28 H 1.08998 * 109.63880 * 170.98409 * 9 8 6 29 29 H 1.09002 * 109.63877 * 291.39397 * 9 8 6 30 30 H 1.09005 * 109.68418 * 49.91051 * 10 9 8 31 31 H 1.08996 * 109.68722 * 170.43781 * 10 9 8 32 32 H 0.96996 * 120.00462 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1918 1.2010 0.0000 4 6 3.5757 1.1804 -0.0029 5 6 4.2295 -0.0484 -0.0062 6 6 3.4841 -1.2049 -0.0009 7 7 2.1585 -1.1424 0.0005 8 6 4.1178 -2.5724 0.0089 9 6 5.5779 -2.4906 -0.4310 10 6 6.2764 -1.4106 0.4033 11 6 5.7344 -0.0474 -0.0231 12 1 6.0819 0.1783 -1.0313 13 6 6.2414 1.0081 0.9254 14 1 5.7167 1.2008 1.8494 15 6 7.3754 1.7278 0.6135 16 7 7.9501 1.5739 -0.5593 17 14 8.0954 2.9215 1.8570 18 1 9.0816 2.2119 2.7109 19 1 8.7701 4.0344 1.1416 20 1 7.0069 3.4674 2.7069 21 1 -0.3632 -0.0001 -1.0278 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 1.6563 2.1387 0.0026 25 1 4.1387 2.1020 -0.0070 26 1 4.0687 -2.9842 1.0170 27 1 3.5734 -3.2257 -0.6730 28 1 6.0644 -3.4521 -0.2669 29 1 5.6279 -2.2306 -1.4884 30 1 6.0701 -1.5732 1.4612 31 1 7.3516 -1.4497 0.2286 32 1 8.7476 2.0805 -0.7789 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260121649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:34 Heat of formation + Delta-G solvation = 4.796901 kcal Electronic energy + Delta-G solvation = -14423.356029 eV Core-core repulsion = 12154.385318 eV Total energy + Delta-G solvation = -2268.970710 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.85676 -36.14658 -33.33024 -31.87382 -31.20291 -28.97197 -26.94513 -24.98482 -22.66169 -21.62939 -21.01108 -18.76345 -16.55806 -15.73839 -15.14597 -14.73103 -14.44980 -13.87565 -13.29250 -13.01948 -12.66858 -12.35687 -12.13037 -11.91835 -11.87440 -11.58884 -11.03400 -10.95016 -10.85212 -10.41427 -10.15252 -9.81283 -9.53765 -9.20671 -8.78059 -8.58443 -8.46896 -7.70369 -6.11858 -4.15310 1.89282 2.13656 3.24804 3.32259 3.35258 4.33988 4.51676 4.77619 5.17497 5.32135 5.52305 5.67020 5.74982 5.82019 5.86933 5.91545 5.99762 6.11842 6.21302 6.38245 6.49420 6.51893 6.62855 6.66929 6.93585 7.00258 7.05737 7.23689 7.57129 7.61809 7.76938 7.82345 8.30263 8.73537 8.93513 9.47993 10.96369 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.010013 C = 0.008077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.260921 B = 2795.701698 C = 3465.841643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.096 3.904 3 C -0.188 4.188 4 C -0.059 4.059 5 C -0.082 4.082 6 C 0.108 3.892 7 N -0.499 5.499 8 C -0.056 4.056 9 C -0.123 4.123 10 C -0.103 4.103 11 C 0.065 3.935 12 H 0.077 0.923 13 C -0.510 4.510 14 H 0.055 0.945 15 C 0.066 3.934 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.121 0.879 25 H 0.139 0.861 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.000 -3.110 0.226 8.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 C -0.208 4.208 4 C -0.084 4.084 5 C -0.084 4.084 6 C -0.027 4.027 7 N -0.209 5.209 8 C -0.094 4.094 9 C -0.161 4.161 10 C -0.141 4.141 11 C 0.047 3.953 12 H 0.095 0.905 13 C -0.548 4.548 14 H 0.074 0.926 15 C -0.136 4.136 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.198 1.198 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.139 0.861 25 H 0.157 0.843 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.310 -3.813 0.115 9.144 hybrid contribution 0.933 1.602 0.687 1.977 sum -7.377 -2.211 0.802 7.743 Atomic orbital electron populations 1.20555 0.90021 1.02390 1.02047 1.20860 0.96066 0.88730 0.98779 1.21862 0.95380 0.98413 1.05129 1.21784 0.93012 0.99477 0.94151 1.21324 1.00063 0.91867 0.95140 1.20996 0.88396 0.95423 0.97881 1.67181 1.10071 1.29668 1.13995 1.20214 0.95584 0.92030 1.01592 1.21671 0.94212 0.99532 1.00659 1.21678 0.99522 0.94969 0.97902 1.17934 0.84376 0.93126 0.99909 0.90526 1.21017 1.10220 1.18809 1.04774 0.92647 1.24979 0.96974 0.96587 0.95056 1.69897 1.20753 1.42089 1.20091 0.86612 0.79464 0.80631 0.81463 1.20500 1.21195 1.19831 0.91447 0.91341 0.91544 0.86143 0.84323 0.91073 0.91300 0.92576 0.92231 0.93432 0.92209 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.24 10.17 36.01 0.37 -0.88 16 2 C 0.10 1.74 6.78 -82.73 -0.56 1.18 16 3 C -0.19 -3.43 9.76 -39.52 -0.39 -3.82 16 4 C -0.06 -1.24 9.15 -39.17 -0.36 -1.60 16 5 C -0.08 -1.84 5.41 -104.60 -0.57 -2.41 16 6 C 0.11 2.24 6.62 -82.44 -0.55 1.70 16 7 N -0.50 -10.02 10.10 -5.77 -0.06 -10.08 16 8 C -0.06 -1.01 5.92 -28.02 -0.17 -1.18 16 9 C -0.12 -2.23 5.97 -26.71 -0.16 -2.39 16 10 C -0.10 -2.23 5.25 -26.69 -0.14 -2.37 16 11 C 0.07 1.59 2.34 -93.14 -0.22 1.37 16 12 H 0.08 2.07 7.20 -51.93 -0.37 1.70 16 13 C -0.51 -13.43 6.93 -34.44 -0.24 -13.67 16 14 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 15 C 0.07 1.77 5.45 -17.82 -0.10 1.67 16 16 N -0.89 -24.80 12.75 55.43 0.71 -24.10 16 17 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 24 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 25 H 0.14 3.02 7.35 -52.49 -0.39 2.63 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 30 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 265.33 15.07 4.00 4.00 Total: -1.00 -28.28 265.33 -7.97 -36.25 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -4.52 Total: 0.65 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -3.07 Total: -22.39 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.65 Total: -34.18 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.28 -7.97 -36.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260121649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.043 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds