Wall clock time and date at job start Mon Mar 30 2020 02:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38248 * 119.69286 * 2 1 4 4 C 1.38405 * 118.84053 * 180.13528 * 3 2 1 5 5 C 1.39190 * 118.86742 * 0.02562 * 4 3 2 6 6 C 1.37591 * 119.18125 * 359.72969 * 5 4 3 7 7 N 1.31512 * 119.69818 * 179.97438 * 2 1 3 8 8 C 1.50720 * 122.33546 * 180.58155 * 6 5 4 9 9 C 1.52722 * 110.57949 * 341.95592 * 8 6 5 10 10 C 1.53315 * 108.45466 * 51.29045 * 9 8 6 11 11 C 1.50500 * 117.97476 * 179.40230 * 5 4 3 12 12 H 1.09000 * 109.23021 * 282.84338 * 11 5 4 13 13 C 1.50690 * 109.26111 * 42.31239 * 11 5 4 14 14 H 1.07996 * 120.00688 * 36.12705 * 13 11 5 15 15 C 1.37881 * 119.99763 * 216.12924 * 13 11 5 16 16 N 1.31513 * 120.00364 * 5.72111 * 15 13 11 17 17 Si 1.86803 * 119.99905 * 185.72064 * 15 13 11 18 18 H 1.48502 * 109.47250 * 90.00007 * 17 15 13 19 19 H 1.48504 * 109.46976 * 210.00170 * 17 15 13 20 20 H 1.48498 * 109.47330 * 329.99821 * 17 15 13 21 21 H 1.09006 * 109.46491 * 90.00309 * 1 2 3 22 22 H 1.09002 * 109.47150 * 209.99777 * 1 2 3 23 23 H 1.08994 * 109.47406 * 330.00100 * 1 2 3 24 24 H 1.07993 * 120.57740 * 0.15730 * 3 2 1 25 25 H 1.07999 * 120.56574 * 179.75121 * 4 3 2 26 26 H 1.09003 * 109.25695 * 102.23718 * 8 6 5 27 27 H 1.09001 * 109.25549 * 221.70620 * 8 6 5 28 28 H 1.08998 * 109.63880 * 170.98409 * 9 8 6 29 29 H 1.09002 * 109.63877 * 291.39397 * 9 8 6 30 30 H 1.09005 * 109.68418 * 49.91051 * 10 9 8 31 31 H 1.08996 * 109.68722 * 170.43781 * 10 9 8 32 32 H 0.96996 * 120.00462 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1918 1.2010 0.0000 4 6 3.5757 1.1804 -0.0029 5 6 4.2295 -0.0484 -0.0062 6 6 3.4841 -1.2049 -0.0009 7 7 2.1585 -1.1424 0.0005 8 6 4.1178 -2.5724 0.0089 9 6 5.5779 -2.4906 -0.4310 10 6 6.2764 -1.4106 0.4033 11 6 5.7344 -0.0474 -0.0231 12 1 6.0819 0.1783 -1.0313 13 6 6.2414 1.0081 0.9254 14 1 5.7167 1.2008 1.8494 15 6 7.3754 1.7278 0.6135 16 7 7.9501 1.5739 -0.5593 17 14 8.0954 2.9215 1.8570 18 1 9.0816 2.2119 2.7109 19 1 8.7701 4.0344 1.1416 20 1 7.0069 3.4674 2.7069 21 1 -0.3632 -0.0001 -1.0278 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 1.6563 2.1387 0.0026 25 1 4.1387 2.1020 -0.0070 26 1 4.0687 -2.9842 1.0170 27 1 3.5734 -3.2257 -0.6730 28 1 6.0644 -3.4521 -0.2669 29 1 5.6279 -2.2306 -1.4884 30 1 6.0701 -1.5732 1.4612 31 1 7.3516 -1.4497 0.2286 32 1 8.7476 2.0805 -0.7789 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260121649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:34 Heat of formation + Delta-G solvation = -10.473283 kcal Electronic energy + Delta-G solvation = -14424.018193 eV Core-core repulsion = 12154.385318 eV Total energy + Delta-G solvation = -2269.632875 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.40750 -37.76143 -35.12405 -33.60023 -32.64338 -30.66987 -28.31488 -26.89808 -24.22440 -23.22130 -22.66217 -20.35976 -18.54797 -17.37109 -16.82019 -16.27048 -16.16577 -15.30771 -14.74689 -14.59523 -14.51091 -13.77510 -13.67014 -13.42923 -13.33981 -12.88601 -12.84146 -12.64151 -12.56022 -12.06556 -11.94748 -11.52045 -11.25269 -11.04735 -10.62777 -10.33706 -10.09912 -9.30337 -8.16172 -6.25807 0.36169 0.54396 1.38551 1.40383 1.49731 2.39629 2.96940 3.12390 3.39333 3.94371 4.06513 4.24427 4.29598 4.34852 4.45600 4.48866 4.83124 4.85262 4.87658 4.91656 4.97193 5.01751 5.09977 5.20249 5.36097 5.37683 5.41354 5.56388 5.60578 5.81317 5.96586 6.05336 6.32154 6.86747 7.21413 7.39805 8.91503 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.031060 B = 0.010013 C = 0.008077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.260921 B = 2795.701698 C = 3465.841643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.097 3.903 3 C -0.183 4.183 4 C -0.077 4.077 5 C -0.116 4.116 6 C 0.100 3.900 7 N -0.509 5.509 8 C -0.053 4.053 9 C -0.112 4.112 10 C -0.098 4.098 11 C 0.067 3.933 12 H 0.037 0.963 13 C -0.517 4.517 14 H 0.045 0.955 15 C 0.019 3.981 16 N -0.923 5.923 17 Si 0.951 3.049 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.269 1.269 21 H 0.086 0.914 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.156 0.844 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.958 -3.558 0.876 10.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C -0.203 4.203 4 C -0.103 4.103 5 C -0.118 4.118 6 C -0.034 4.034 7 N -0.220 5.220 8 C -0.091 4.091 9 C -0.150 4.150 10 C -0.136 4.136 11 C 0.048 3.952 12 H 0.055 0.945 13 C -0.555 4.555 14 H 0.064 0.936 15 C -0.180 4.180 16 N -0.563 5.563 17 Si 0.776 3.224 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.194 1.194 21 H 0.104 0.896 22 H 0.093 0.907 23 H 0.111 0.889 24 H 0.173 0.827 25 H 0.139 0.861 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.275 -4.268 0.772 11.153 hybrid contribution 1.425 1.763 0.468 2.314 sum -8.851 -2.505 1.240 9.282 Atomic orbital electron populations 1.20684 0.86188 1.04045 1.03709 1.21731 0.98513 0.88013 0.96088 1.22188 0.94023 1.00338 1.03742 1.21798 0.94690 0.98508 0.95335 1.21209 0.98981 0.93359 0.98249 1.21346 0.88953 0.95964 0.97142 1.67342 1.09418 1.30589 1.14608 1.20270 0.95007 0.90976 1.02842 1.21577 0.94538 0.99568 0.99314 1.21526 0.98532 0.95194 0.98396 1.17761 0.86172 0.93943 0.97287 0.94481 1.21227 1.10190 1.19406 1.04649 0.93636 1.25685 0.97386 0.98338 0.96623 1.70020 1.21244 1.43322 1.21673 0.85663 0.78719 0.78667 0.79302 1.20012 1.20810 1.19369 0.89594 0.90744 0.88905 0.82664 0.86136 0.89790 0.89204 0.89325 0.93013 0.93608 0.94210 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.01 10.17 71.24 0.72 -1.29 16 2 C 0.10 3.25 6.78 42.61 0.29 3.54 16 3 C -0.18 -6.37 9.76 22.31 0.22 -6.15 16 4 C -0.08 -3.33 9.15 22.54 0.21 -3.12 16 5 C -0.12 -5.31 5.41 -19.85 -0.11 -5.41 16 6 C 0.10 4.09 6.62 42.28 0.28 4.37 16 7 N -0.51 -19.39 10.10 -172.18 -1.74 -21.13 16 8 C -0.05 -1.82 5.92 29.76 0.18 -1.65 16 9 C -0.11 -3.97 5.97 30.61 0.18 -3.79 16 10 C -0.10 -4.37 5.25 30.62 0.16 -4.21 16 11 C 0.07 3.41 2.34 -12.43 -0.03 3.38 16 12 H 0.04 2.14 7.20 -2.39 -0.02 2.12 16 13 C -0.52 -28.17 6.93 25.60 0.18 -28.00 16 14 H 0.05 2.51 7.82 -2.91 -0.02 2.49 16 15 C 0.02 1.02 5.45 84.66 0.46 1.48 16 16 N -0.92 -53.34 12.75 21.45 0.27 -53.06 16 17 Si 0.95 43.25 29.54 68.60 2.03 45.27 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 22 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 24 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 25 H 0.12 5.48 7.35 -2.91 -0.02 5.46 16 26 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 30 H 0.05 2.00 8.08 -2.38 -0.02 1.98 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -62.35 265.33 4.39 -57.96 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.09 Total: 11.81 kcal Atomic # 6 Polarization: -43.58 SS G_CDS: 2.74 Total: -40.84 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -1.47 Total: -74.20 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -62.35 4.39 -57.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260121649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.485 kcal (2) G-P(sol) polarization free energy of solvation -62.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds