Wall clock time and date at job start Mon Mar 30 2020 03:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47154 * 2 1 4 4 C 1.50700 * 109.46986 * 240.00222 * 2 1 3 5 5 H 1.08004 * 120.00522 * 245.61594 * 4 2 1 6 6 C 1.37887 * 120.00112 * 65.61262 * 4 2 1 7 7 N 1.31508 * 120.00189 * 197.60426 * 6 4 2 8 8 Si 1.86799 * 119.99648 * 17.60964 * 6 4 2 9 9 H 1.48503 * 109.47100 * 180.02562 * 8 6 4 10 10 H 1.48507 * 109.47068 * 299.99843 * 8 6 4 11 11 H 1.48497 * 109.47253 * 59.99777 * 8 6 4 12 12 C 1.50697 * 109.47052 * 120.00667 * 2 1 3 13 13 C 1.37953 * 119.90259 * 59.72448 * 12 2 1 14 14 C 1.38264 * 120.26438 * 179.80396 * 13 12 2 15 15 C 1.38347 * 119.88440 * 0.42121 * 14 13 12 16 16 C 1.37881 * 120.07978 * 359.69807 * 15 14 13 17 17 C 1.39006 * 120.48144 * 0.23342 * 16 15 14 18 18 N 1.40044 * 110.95203 * 179.47647 * 17 16 15 19 19 C 1.47904 * 107.89302 * 18.29352 * 18 17 16 20 20 C 1.51565 * 131.57077 * 180.39749 * 16 15 14 21 21 H 1.08998 * 109.46748 * 306.17375 * 1 2 3 22 22 H 1.09008 * 109.47247 * 66.16551 * 1 2 3 23 23 H 1.08995 * 109.47596 * 186.16819 * 1 2 3 24 24 H 0.97002 * 120.00320 * 354.79791 * 7 6 4 25 25 H 1.07997 * 119.86647 * 0.04772 * 13 12 2 26 26 H 1.07998 * 120.06069 * 180.13419 * 14 13 12 27 27 H 1.07993 * 119.96206 * 179.72502 * 15 14 13 28 28 H 1.00902 * 110.99660 * 256.46879 * 18 17 16 29 29 H 1.09005 * 110.77757 * 91.03824 * 19 18 17 30 30 H 1.09000 * 110.77655 * 214.27591 * 19 18 17 31 31 H 1.09007 * 110.73937 * 45.47240 * 20 16 15 32 32 H 1.08998 * 110.74355 * 282.14313 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5764 -1.6384 -1.1341 6 6 1.7973 -0.1756 -2.4795 7 7 1.9140 -0.9300 -3.5504 8 14 1.3131 1.6204 -2.6505 9 1 1.1181 1.9460 -4.0862 10 1 0.0481 1.8645 -1.9118 11 1 2.3874 2.4783 -2.0893 12 6 2.0323 -0.7105 1.2304 13 6 1.6931 -2.0297 1.4494 14 6 2.1531 -2.6900 2.5737 15 6 2.9497 -2.0230 3.4872 16 6 3.2896 -0.7038 3.2743 17 6 2.8334 -0.0314 2.1464 18 7 3.2861 1.2938 2.1363 19 6 4.4295 1.3906 3.0695 20 6 4.1365 0.2595 4.0817 21 1 -0.3633 0.6066 0.8296 22 1 -0.3634 0.4153 -0.9401 23 1 -0.3634 -1.0216 0.1104 24 1 2.2381 -1.8407 -3.4692 25 1 1.0690 -2.5497 0.7379 26 1 1.8874 -3.7234 2.7408 27 1 3.3060 -2.5363 4.3681 28 1 2.5487 1.9298 2.4007 29 1 5.3699 1.2096 2.5488 30 1 4.4439 2.3619 3.5639 31 1 5.0614 -0.2178 4.4057 32 1 3.5781 0.6414 4.9364 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260144593.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:08 Heat of formation + Delta-G solvation = 4.249516 kcal Electronic energy + Delta-G solvation = -14459.772731 eV Core-core repulsion = 12190.778284 eV Total energy + Delta-G solvation = -2268.994447 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.38908 -37.70890 -36.07920 -33.82511 -31.38257 -29.95071 -28.94524 -26.72784 -24.29562 -22.94147 -22.32587 -20.71248 -19.32756 -18.06346 -16.83082 -16.31495 -16.00466 -15.60637 -15.17275 -14.71283 -14.54338 -14.10410 -13.71655 -13.46813 -13.25081 -13.10258 -12.86131 -12.45334 -12.30793 -12.08977 -11.71893 -11.60979 -11.37480 -10.99069 -10.55834 -10.34855 -9.46239 -8.77944 -8.60441 -6.31014 0.48320 0.59975 1.45665 1.55269 1.73961 2.50300 2.88181 3.01458 3.11134 3.72850 3.93551 4.16056 4.23237 4.28509 4.52041 4.58216 4.65184 4.71704 4.80379 4.87846 4.97658 5.03993 5.10465 5.24088 5.32086 5.45985 5.59851 5.70304 5.80354 5.92847 6.06268 6.17959 6.29243 6.46638 6.61414 7.44500 8.66852 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032960 B = 0.010263 C = 0.008789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.315628 B = 2727.715572 C = 3185.106162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.049 3.951 3 H 0.035 0.965 4 C -0.583 4.583 5 H 0.011 0.989 6 C -0.024 4.024 7 N -0.942 5.942 8 Si 1.086 2.914 9 H -0.291 1.291 10 H -0.241 1.241 11 H -0.268 1.268 12 C -0.060 4.060 13 C -0.119 4.119 14 C -0.139 4.139 15 C -0.108 4.108 16 C -0.158 4.158 17 C 0.064 3.936 18 N -0.649 5.649 19 C 0.053 3.947 20 C -0.098 4.098 21 H 0.051 0.949 22 H 0.045 0.955 23 H 0.039 0.961 24 H 0.249 0.751 25 H 0.104 0.896 26 H 0.142 0.858 27 H 0.147 0.853 28 H 0.357 0.643 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.513 4.268 17.673 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.620 4.620 5 H 0.030 0.970 6 C -0.220 4.220 7 N -0.579 5.579 8 Si 0.907 3.093 9 H -0.217 1.217 10 H -0.165 1.165 11 H -0.193 1.193 12 C -0.062 4.062 13 C -0.137 4.137 14 C -0.157 4.157 15 C -0.126 4.126 16 C -0.161 4.161 17 C -0.033 4.033 18 N -0.278 5.278 19 C -0.075 4.075 20 C -0.135 4.135 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.122 0.878 26 H 0.160 0.840 27 H 0.164 0.836 28 H 0.183 0.817 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.116 0.884 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.445 5.453 15.985 16.951 hybrid contribution 0.234 -1.970 1.024 2.233 sum 1.679 3.482 17.009 17.442 Atomic orbital electron populations 1.22131 0.97005 1.00323 1.00161 1.17980 0.92895 0.95590 0.90556 0.94713 1.22116 1.38822 1.08101 0.93008 0.97042 1.27212 0.94506 1.08470 0.91844 1.70999 1.44943 1.09329 1.32632 0.83560 0.78897 0.70810 0.76019 1.21727 1.16489 1.19331 1.19726 0.97562 0.94362 0.94569 1.20845 1.01012 0.94006 0.97865 1.21267 0.99338 1.00618 0.94516 1.20572 0.98829 0.93033 1.00195 1.21409 1.02411 0.96438 0.95873 1.19507 0.97977 0.91542 0.94257 1.58229 1.11735 1.03989 1.53873 1.23111 0.93298 1.00076 0.90986 1.21706 0.99598 0.94337 0.97906 0.93045 0.93588 0.94148 0.94219 0.87828 0.83978 0.83553 0.81713 0.90801 0.86676 0.88383 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.14 8.77 71.98 0.63 -5.51 16 2 C 0.05 2.41 2.06 -12.29 -0.03 2.38 16 3 H 0.03 1.71 6.19 -2.39 -0.01 1.70 16 4 C -0.58 -34.72 8.53 25.60 0.22 -34.50 16 5 H 0.01 0.75 7.78 -2.91 -0.02 0.73 16 6 C -0.02 -1.42 5.29 84.66 0.45 -0.97 16 7 N -0.94 -61.26 13.69 21.45 0.29 -60.96 16 8 Si 1.09 52.09 26.29 68.60 1.80 53.89 16 9 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.24 -10.16 5.76 99.48 0.57 -9.58 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 C -0.06 -2.67 4.77 -19.66 -0.09 -2.76 16 13 C -0.12 -4.94 8.56 22.21 0.19 -4.75 16 14 C -0.14 -4.62 10.06 22.30 0.22 -4.40 16 15 C -0.11 -3.20 10.03 22.21 0.22 -2.97 16 16 C -0.16 -4.95 6.23 -19.49 -0.12 -5.07 16 17 C 0.06 2.45 6.50 38.28 0.25 2.70 16 18 N -0.65 -21.23 6.68 -332.87 -2.22 -23.45 16 19 C 0.05 1.23 7.80 86.65 0.68 1.91 16 20 C -0.10 -2.12 7.03 30.67 0.22 -1.91 16 21 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.05 2.08 4.89 -2.38 -0.01 2.07 16 23 H 0.04 1.77 7.16 -2.39 -0.02 1.75 16 24 H 0.25 16.47 8.73 -92.71 -0.81 15.66 16 25 H 0.10 4.59 7.51 -2.91 -0.02 4.57 16 26 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 27 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 28 H 0.36 10.05 8.86 -89.69 -0.79 9.26 16 29 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -71.87 260.21 2.86 -69.01 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.15 Total: 17.36 kcal Atomic # 6 Polarization: -58.68 SS G_CDS: 2.84 Total: -55.85 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -1.93 Total: -84.42 kcal Atomic # 14 Polarization: 52.09 SS G_CDS: 1.80 Total: 53.89 kcal Total: -71.87 2.86 -69.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144593.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.264 kcal (2) G-P(sol) polarization free energy of solvation -71.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds