Wall clock time and date at job start Mon Mar 30 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 C 1.37949 * 119.90360 * 300.00394 * 12 2 1 14 14 C 1.38260 * 120.26129 * 180.02562 * 13 12 2 15 15 C 1.38346 * 119.88633 * 0.15534 * 14 13 12 16 16 C 1.37874 * 120.07998 * 359.94101 * 15 14 13 17 17 C 1.39007 * 120.47731 * 359.52335 * 16 15 14 18 18 N 1.40041 * 110.94348 * 180.57083 * 17 16 15 19 19 C 1.47907 * 107.93868 * 341.86184 * 18 17 16 20 20 C 1.51579 * 131.56773 * 179.57428 * 16 15 14 21 21 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 22 22 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.07995 * 119.86937 * 0.02562 * 13 12 2 26 26 H 1.08002 * 120.05810 * 180.17558 * 14 13 12 27 27 H 1.08007 * 119.95976 * 179.97438 * 15 14 13 28 28 H 1.00900 * 110.79165 * 103.58201 * 18 17 16 29 29 H 1.09005 * 110.77661 * 268.83904 * 19 18 17 30 30 H 1.08998 * 110.78130 * 145.41209 * 19 18 17 31 31 H 1.08997 * 110.74029 * 314.37622 * 20 16 15 32 32 H 1.08996 * 110.73722 * 77.70322 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.8178 -1.1113 4.0023 10 1 1.8417 -0.4090 5.2205 11 1 1.8384 -2.5122 4.0140 12 6 2.0323 -0.7105 -1.2304 13 6 1.6978 -2.0313 -1.4466 14 6 2.1550 -2.6905 -2.5726 15 6 2.9539 -2.0243 -3.4847 16 6 3.2927 -0.7048 -3.2723 17 6 2.8290 -0.0298 -2.1490 18 7 3.2812 1.2955 -2.1393 19 6 4.4283 1.3924 -3.0679 20 6 4.1421 0.2578 -4.0783 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.7164 1.1670 3.4843 25 1 1.0763 -2.5524 -0.7335 26 1 1.8888 -3.7237 -2.7401 27 1 3.3121 -2.5382 -4.3645 28 1 2.5428 1.9279 -2.4096 29 1 5.3669 1.2149 -2.5429 30 1 4.4407 2.3610 -3.5676 31 1 5.0693 -0.2188 -4.3963 32 1 3.5872 0.6363 -4.9367 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260144597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:10 Heat of formation + Delta-G solvation = 7.131931 kcal Electronic energy + Delta-G solvation = -14397.488038 eV Core-core repulsion = 12128.618583 eV Total energy + Delta-G solvation = -2268.869456 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.30615 -37.60332 -35.99595 -33.49778 -31.06274 -29.86774 -28.74614 -27.18302 -24.31203 -22.96326 -22.20376 -20.74569 -18.20687 -17.92648 -16.78955 -16.55931 -16.10947 -15.67987 -14.83084 -14.72361 -14.32763 -13.73131 -13.60351 -13.31779 -13.06048 -12.87750 -12.71983 -12.61717 -12.43991 -12.17410 -12.00894 -11.86867 -11.13643 -10.95889 -10.51529 -10.37555 -9.31135 -8.63297 -8.06518 -6.19564 0.56431 0.68962 1.40295 1.41955 1.49647 2.43859 2.97761 3.08420 3.21063 3.77533 4.00318 4.21457 4.30666 4.38284 4.65269 4.68653 4.77726 4.82673 4.90681 5.01056 5.09525 5.13773 5.27894 5.39839 5.52217 5.62801 5.68019 5.75361 5.96150 6.08995 6.16951 6.32903 6.41382 6.52872 6.88778 7.46724 8.97622 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.033825 B = 0.009052 C = 0.008398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.599001 B = 3092.658472 C = 3333.492939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.078 3.922 3 H 0.010 0.990 4 C -0.517 4.517 5 H 0.044 0.956 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.269 1.269 12 C -0.064 4.064 13 C -0.116 4.116 14 C -0.137 4.137 15 C -0.110 4.110 16 C -0.159 4.159 17 C 0.059 3.941 18 N -0.650 5.650 19 C 0.052 3.948 20 C -0.097 4.097 21 H 0.020 0.980 22 H 0.030 0.970 23 H 0.058 0.942 24 H 0.261 0.739 25 H 0.112 0.888 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.352 0.648 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.383 -2.395 -13.248 14.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.059 3.941 3 H 0.029 0.971 4 C -0.555 4.555 5 H 0.063 0.937 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.195 1.195 12 C -0.066 4.066 13 C -0.135 4.135 14 C -0.155 4.155 15 C -0.128 4.128 16 C -0.162 4.162 17 C -0.038 4.038 18 N -0.278 5.278 19 C -0.075 4.075 20 C -0.135 4.135 21 H 0.039 0.961 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.130 0.870 26 H 0.164 0.836 27 H 0.164 0.836 28 H 0.176 0.824 29 H 0.094 0.906 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.688 -2.221 -12.505 13.539 hybrid contribution -0.326 -0.266 0.592 0.726 sum 4.362 -2.487 -11.914 12.929 Atomic orbital electron populations 1.21630 0.97814 0.98973 0.99358 1.17594 0.92495 0.94479 0.89528 0.97144 1.21340 1.30855 1.11924 0.91428 0.93738 1.25703 0.95428 0.95760 1.01657 1.70011 1.37768 1.23980 1.23884 0.85703 0.78590 0.78940 0.78970 1.20196 1.20634 1.19455 1.20009 0.97114 0.94502 0.94929 1.20890 1.00806 0.93721 0.98069 1.21290 0.99126 1.00702 0.94379 1.20566 0.99084 0.92882 1.00305 1.21385 1.02498 0.96521 0.95833 1.19576 0.98372 0.91299 0.94558 1.58279 1.11375 1.04362 1.53794 1.23113 0.93340 0.99932 0.91152 1.21695 0.99663 0.94373 0.97795 0.96071 0.95115 0.92315 0.93023 0.86991 0.83628 0.83610 0.82355 0.90617 0.87164 0.88199 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.12 8.78 71.98 0.63 -5.49 16 2 C 0.08 4.15 2.48 -12.29 -0.03 4.12 16 3 H 0.01 0.61 7.53 -2.39 -0.02 0.60 16 4 C -0.52 -29.98 8.23 25.60 0.21 -29.77 16 5 H 0.04 2.59 7.60 -2.91 -0.02 2.57 16 6 C 0.01 0.73 5.31 84.66 0.45 1.18 16 7 N -0.92 -54.57 11.33 21.45 0.24 -54.33 16 8 Si 0.95 45.29 29.54 68.60 2.03 47.31 16 9 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 C -0.06 -2.93 4.77 -19.66 -0.09 -3.02 16 13 C -0.12 -4.79 8.67 22.21 0.19 -4.60 16 14 C -0.14 -4.46 10.06 22.30 0.22 -4.24 16 15 C -0.11 -3.29 10.03 22.21 0.22 -3.06 16 16 C -0.16 -5.19 6.23 -19.49 -0.12 -5.31 16 17 C 0.06 2.39 6.49 38.28 0.25 2.64 16 18 N -0.65 -23.54 6.69 -332.88 -2.23 -25.77 16 19 C 0.05 1.35 7.80 86.65 0.68 2.02 16 20 C -0.10 -2.28 7.03 30.67 0.22 -2.07 16 21 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.03 1.48 7.37 -2.39 -0.02 1.46 16 23 H 0.06 3.28 6.08 -2.39 -0.01 3.26 16 24 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 25 H 0.11 4.74 7.55 -2.91 -0.02 4.72 16 26 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 27 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 28 H 0.35 11.71 8.85 -89.69 -0.79 10.92 16 29 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.91 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -66.63 264.88 3.19 -63.44 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.32 Total: 16.93 kcal Atomic # 6 Polarization: -50.42 SS G_CDS: 2.83 Total: -47.59 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -1.98 Total: -80.10 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -66.63 3.19 -63.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.575 kcal (2) G-P(sol) polarization free energy of solvation -66.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds