Wall clock time and date at job start Mon Mar 30 2020 02:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38128 * 120.03864 * 2 1 4 4 C 1.38263 * 120.07550 * 180.02562 * 3 2 1 5 5 C 1.38309 * 120.15194 * 359.95397 * 4 3 2 6 6 C 1.50699 * 119.96238 * 180.02562 * 5 4 3 7 7 C 1.50693 * 115.54980 * 234.28484 * 6 5 4 8 8 H 1.08007 * 120.00321 * 263.12134 * 7 6 5 9 9 C 1.37874 * 119.99990 * 83.12083 * 7 6 5 10 10 N 1.31515 * 120.00098 * 353.18785 * 9 7 6 11 11 Si 1.86805 * 120.00195 * 173.18451 * 9 7 6 12 12 H 1.48495 * 109.47041 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46960 * 120.00329 * 11 9 7 14 14 H 1.48500 * 109.46893 * 240.00030 * 11 9 7 15 15 C 1.52999 * 117.49566 * 88.61686 * 6 5 4 16 16 C 1.52999 * 117.50046 * 19.96178 * 6 5 4 17 17 C 1.38086 * 120.07145 * 0.02562 * 5 4 3 18 18 C 1.38894 * 120.03881 * 179.72676 * 2 1 3 19 19 N 1.39668 * 120.07270 * 0.02562 * 18 2 1 20 20 H 1.08996 * 109.47603 * 90.00110 * 1 2 3 21 21 H 1.09005 * 109.47053 * 329.99957 * 1 2 3 22 22 H 1.08996 * 109.47476 * 210.00206 * 1 2 3 23 23 H 1.08002 * 119.96038 * 359.97438 * 3 2 1 24 24 H 1.07998 * 119.92706 * 179.97438 * 4 3 2 25 25 H 0.97001 * 120.00288 * 174.98268 * 10 9 7 26 26 H 1.08996 * 117.50160 * 0.02562 * 15 6 5 27 27 H 1.09006 * 117.49703 * 145.01820 * 15 6 5 28 28 H 1.08998 * 117.49428 * 214.98158 * 16 6 5 29 29 H 1.09001 * 117.49647 * 359.97438 * 16 6 5 30 30 H 1.08004 * 120.03371 * 179.97438 * 17 5 4 31 31 H 0.97003 * 120.00244 * 0.02562 * 19 18 2 32 32 H 0.96996 * 119.99933 * 180.02562 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5810 1.1966 -0.0005 5 6 4.2765 0.0011 -0.0001 6 6 5.7835 0.0071 -0.0001 7 6 6.4365 -0.7844 -1.1037 8 1 6.7745 -1.7932 -0.9177 9 6 6.6026 -0.2207 -2.3510 10 7 6.0737 0.9535 -2.6177 11 14 7.5789 -1.1249 -3.6621 12 1 8.0648 -2.4168 -3.1145 13 1 6.7090 -1.3819 -4.8379 14 1 8.7384 -0.2947 -4.0763 15 6 6.4897 0.0431 1.3567 16 6 6.4849 1.2856 0.4627 17 6 3.5915 -1.1978 0.0003 18 6 2.2022 -1.2024 0.0057 19 7 1.5062 -2.4133 0.0110 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 0.8900 0.5139 22 1 -0.3634 -0.8899 0.5138 23 1 1.6583 2.1311 -0.0004 24 1 4.1192 2.1330 -0.0010 25 1 6.2508 1.3831 -3.4692 26 1 5.8644 0.0621 2.2492 27 1 7.4270 -0.5054 1.4509 28 1 7.4189 1.5541 -0.0309 29 1 5.8563 2.1226 0.7669 30 1 4.1352 -2.1310 0.0002 31 1 0.5362 -2.4152 0.0102 32 1 1.9928 -3.2523 0.0153 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260165791.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:27 Heat of formation + Delta-G solvation = 40.226849 kcal Electronic energy + Delta-G solvation = -14329.156453 eV Core-core repulsion = 12061.722100 eV Total energy + Delta-G solvation = -2267.434352 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.89589 -36.35792 -33.42623 -31.92311 -31.39431 -28.14381 -26.17922 -25.30459 -21.80298 -21.27997 -20.59220 -18.91837 -16.73089 -16.19248 -15.25187 -14.66462 -14.51237 -13.73629 -13.39989 -13.32955 -12.90423 -12.57201 -11.91794 -11.72299 -11.62836 -11.03492 -10.95495 -10.71958 -10.38266 -10.34850 -10.07428 -9.85857 -9.46560 -8.97404 -8.39949 -8.22376 -7.42413 -6.67006 -5.98989 -4.06750 2.40305 2.59592 3.29986 3.38529 3.41645 4.42751 4.45674 4.80567 5.29250 5.43928 5.54510 5.59881 5.86084 5.99143 6.07230 6.15672 6.40661 6.47131 6.53837 6.56861 6.76552 6.78444 6.89027 7.12046 7.20222 7.34146 7.48744 7.55260 7.79511 7.91655 7.98367 8.27159 8.33008 8.46337 8.93587 9.58567 11.08551 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.029222 B = 0.009871 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.961377 B = 2835.787899 C = 3127.555203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.197 4.197 3 C -0.085 4.085 4 C -0.160 4.160 5 C 0.047 3.953 6 C 0.069 3.931 7 C -0.492 4.492 8 H 0.061 0.939 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.886 3.114 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.283 1.283 15 C -0.201 4.201 16 C -0.159 4.159 17 C -0.178 4.178 18 C 0.202 3.798 19 N -0.888 5.888 20 H 0.054 0.946 21 H 0.056 0.944 22 H 0.049 0.951 23 H 0.105 0.895 24 H 0.113 0.887 25 H 0.259 0.741 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.388 0.612 32 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.581 -2.184 4.810 9.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.201 4.201 3 C -0.103 4.103 4 C -0.180 4.180 5 C 0.046 3.954 6 C 0.069 3.931 7 C -0.530 4.530 8 H 0.079 0.921 9 C -0.130 4.130 10 N -0.502 5.502 11 Si 0.714 3.286 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.209 1.209 15 C -0.239 4.239 16 C -0.196 4.196 17 C -0.201 4.201 18 C 0.100 3.900 19 N -0.429 5.429 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.068 0.932 23 H 0.123 0.877 24 H 0.131 0.869 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.217 0.783 32 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.626 -2.007 4.634 9.147 hybrid contribution 0.380 -0.652 -0.974 1.232 sum -7.246 -2.660 3.660 8.543 Atomic orbital electron populations 1.20440 0.92745 1.01017 1.00771 1.19038 0.94565 0.92156 1.14377 1.20603 0.94258 0.95853 0.99632 1.20814 0.93006 0.98288 1.05883 1.19463 0.95470 0.91210 0.89244 1.17707 0.86492 0.97231 0.91670 1.20382 1.38845 1.00042 0.93699 0.92129 1.24966 0.94972 0.95325 0.97773 1.70059 1.41171 1.15577 1.23436 0.86632 0.79947 0.80080 0.81950 1.19711 1.21095 1.20939 1.23005 1.02212 1.04152 0.94491 1.22611 1.02641 0.91178 1.03208 1.20312 0.90700 0.98836 1.10209 1.17531 0.91316 0.85508 0.95683 1.42396 1.08153 1.05210 1.87154 0.92765 0.92502 0.93204 0.87651 0.86939 0.93157 0.91542 0.90272 0.90100 0.91394 0.86865 0.78332 0.78109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 9.58 36.00 0.34 -0.96 16 2 C -0.20 -3.63 5.90 -104.42 -0.62 -4.24 16 3 C -0.08 -1.66 9.70 -39.61 -0.38 -2.05 16 4 C -0.16 -3.60 9.30 -39.55 -0.37 -3.96 16 5 C 0.05 1.13 5.24 -104.65 -0.55 0.58 16 6 C 0.07 1.74 1.58 -156.82 -0.25 1.49 16 7 C -0.49 -13.47 8.54 -34.44 -0.29 -13.76 16 8 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 9 C 0.07 2.04 5.40 -17.82 -0.10 1.94 16 10 N -0.87 -24.76 13.03 55.43 0.72 -24.04 16 11 Si 0.89 21.23 29.55 -169.99 -5.02 16.21 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C -0.20 -4.46 9.94 -26.70 -0.27 -4.73 16 16 C -0.16 -3.76 9.12 -26.70 -0.24 -4.00 16 17 C -0.18 -3.93 9.30 -39.38 -0.37 -4.29 16 18 C 0.20 3.85 6.73 -83.79 -0.56 3.28 16 19 N -0.89 -13.03 8.99 32.41 0.29 -12.73 16 20 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 22 H 0.05 0.60 6.54 -51.93 -0.34 0.27 16 23 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 24 H 0.11 2.54 6.41 -52.49 -0.34 2.20 16 25 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 26 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 28 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 29 H 0.07 1.51 6.56 -51.93 -0.34 1.17 16 30 H 0.11 2.47 8.06 -52.48 -0.42 2.04 16 31 H 0.39 4.74 6.82 -40.82 -0.28 4.47 16 32 H 0.39 5.14 8.84 -40.82 -0.36 4.78 16 LS Contribution 271.28 15.07 4.09 4.09 Total: -1.00 -29.59 271.28 -7.73 -37.32 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -4.16 Total: 9.85 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: -3.65 Total: -30.69 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 1.01 Total: -36.77 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.59 -7.73 -37.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260165791.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.545 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds