Wall clock time and date at job start Mon Mar 30 2020 03:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.82906 * 2 1 4 4 C 1.54572 * 110.76621 * 236.63151 * 2 1 3 5 5 C 1.51667 * 102.84484 * 267.45319 * 4 2 1 6 6 C 1.38387 * 131.29229 * 163.70038 * 5 4 2 7 7 C 1.37649 * 120.40690 * 180.29520 * 6 5 4 8 8 C 1.40773 * 119.63987 * 0.09193 * 7 6 5 9 9 C 1.41406 * 120.13328 * 179.72801 * 8 7 6 10 10 H 1.08005 * 119.99605 * 204.56401 * 9 8 7 11 11 C 1.39932 * 120.00313 * 24.56522 * 9 8 7 12 12 N 1.30823 * 119.99765 * 17.92025 * 11 9 8 13 13 Si 1.86795 * 119.99980 * 197.92443 * 11 9 8 14 14 H 1.48506 * 109.47111 * 89.99719 * 13 11 9 15 15 H 1.48507 * 109.47188 * 209.99674 * 13 11 9 16 16 H 1.48500 * 109.47449 * 329.99767 * 13 11 9 17 17 C 1.40378 * 119.73148 * 359.75036 * 8 7 6 18 18 C 1.38803 * 119.99696 * 0.07500 * 17 8 7 19 19 N 1.40096 * 129.74800 * 180.25038 * 18 17 8 20 20 C 1.46901 * 110.99923 * 76.35897 * 19 18 17 21 21 H 1.08999 * 109.47337 * 298.10404 * 1 2 3 22 22 H 1.09004 * 109.46496 * 58.09438 * 1 2 3 23 23 H 1.08997 * 109.47290 * 178.08886 * 1 2 3 24 24 H 1.08992 * 110.74216 * 25.79230 * 4 2 1 25 25 H 1.08999 * 110.73789 * 148.94096 * 4 2 1 26 26 H 1.08007 * 119.79702 * 0.33151 * 6 5 4 27 27 H 1.08007 * 120.17817 * 180.02562 * 7 6 5 28 28 H 0.96997 * 120.00157 * 180.02562 * 12 11 9 29 29 H 1.07998 * 120.00311 * 180.02562 * 17 8 7 30 30 H 1.08998 * 109.46763 * 180.02562 * 20 19 18 31 31 H 1.08996 * 109.47037 * 60.02425 * 20 19 18 32 32 H 1.08998 * 109.47280 * 300.01932 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0780 -0.7949 -1.2070 5 6 2.2590 -2.1893 -0.6384 6 6 2.4312 -3.4137 -1.2598 7 6 2.5706 -4.5610 -0.5121 8 6 2.5355 -4.4847 0.8931 9 6 2.6719 -5.6575 1.6713 10 1 2.2662 -5.6919 2.6717 11 6 3.3326 -6.7733 1.1454 12 7 4.1173 -6.6396 0.1073 13 14 3.0939 -8.4536 1.9257 14 1 1.9456 -9.1401 1.2812 15 1 4.3237 -9.2651 1.7395 16 1 2.8228 -8.2917 3.3767 17 6 2.3640 -3.2398 1.5187 18 6 2.2283 -2.0907 0.7520 19 7 2.0542 -0.7603 1.1550 20 6 3.3185 -0.1855 1.6336 21 1 -0.3634 0.4841 0.9065 22 1 -0.3632 0.5432 -0.8725 23 1 -0.3634 -1.0271 -0.0343 24 1 1.3568 -0.8020 -2.0242 25 1 3.0314 -0.3839 -1.5391 26 1 2.4569 -3.4694 -2.3381 27 1 2.7052 -5.5146 -1.0009 28 1 4.5750 -7.4131 -0.2575 29 1 2.3368 -3.1762 2.5965 30 1 3.1548 0.8475 1.9405 31 1 4.0569 -0.2138 0.8323 32 1 3.6820 -0.7636 2.4832 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260191544.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:04 Heat of formation + Delta-G solvation = 23.753138 kcal Electronic energy + Delta-G solvation = -14374.167902 eV Core-core repulsion = 12106.019195 eV Total energy + Delta-G solvation = -2268.148706 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.66269 -36.06855 -33.22978 -31.78923 -29.82705 -28.51497 -26.95523 -24.80875 -24.02924 -20.84962 -19.98820 -19.58663 -17.02351 -15.32966 -15.23645 -14.63855 -14.41081 -13.81649 -13.33068 -12.83785 -12.66181 -12.31066 -12.14122 -12.00052 -11.58203 -11.25590 -11.16283 -11.03037 -10.83646 -10.60148 -10.31404 -10.20731 -9.92323 -9.38024 -9.16302 -8.30125 -7.40217 -6.80244 -6.73505 -4.34485 2.75085 2.97212 3.07913 3.11759 3.19767 3.93560 4.44350 4.58748 5.24724 5.50550 5.53759 5.64675 5.76105 5.93550 5.99715 6.10832 6.20744 6.26215 6.37775 6.39179 6.43794 6.63461 6.97010 7.05967 7.10580 7.17680 7.29234 7.57301 7.80414 7.95041 8.09516 8.15843 8.35726 8.66357 8.90534 8.98338 10.19240 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.050704 B = 0.007780 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.091445 B = 3597.937621 C = 3775.946844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.075 3.925 3 H 0.074 0.926 4 C -0.084 4.084 5 C -0.259 4.259 6 C -0.075 4.075 7 C -0.170 4.170 8 C 0.122 3.878 9 C -0.462 4.462 10 H 0.078 0.922 11 C 0.076 3.924 12 N -0.794 5.794 13 Si 0.908 3.092 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.262 1.262 17 C -0.207 4.207 18 C 0.102 3.898 19 N -0.494 5.494 20 C 0.033 3.967 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.280 0.720 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.198 6.664 -0.845 7.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.033 4.033 3 H 0.092 0.908 4 C -0.122 4.122 5 C -0.262 4.262 6 C -0.094 4.094 7 C -0.190 4.190 8 C 0.119 3.881 9 C -0.491 4.491 10 H 0.096 0.904 11 C -0.141 4.141 12 N -0.419 5.419 13 Si 0.733 3.267 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.186 1.186 17 C -0.229 4.229 18 C 0.008 3.992 19 N -0.213 5.213 20 C -0.113 4.113 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.138 0.862 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.368 6.609 -0.533 7.040 hybrid contribution 0.622 -0.824 -0.371 1.097 sum -1.745 5.785 -0.904 6.110 Atomic orbital electron populations 1.21629 0.94084 1.02403 1.00643 1.22502 0.95965 0.96080 0.88778 0.90786 1.21350 0.99380 0.94006 0.97471 1.20177 1.18346 0.93650 0.94039 1.19966 1.00451 0.91816 0.97190 1.21253 1.06847 0.96912 0.93979 1.17364 0.87533 0.91159 0.92087 1.19558 1.31988 0.96203 1.01370 0.90356 1.25894 0.92749 1.01053 0.94419 1.69832 1.19547 1.32159 1.20368 0.86310 0.78602 0.81187 0.80607 1.19262 1.20356 1.18593 1.20354 1.15079 0.90182 0.97238 1.19094 0.99291 0.88241 0.92568 1.60287 1.26227 1.01332 1.33437 1.22331 0.90142 0.99010 0.99852 0.92591 0.92837 0.92069 0.91928 0.92875 0.89664 0.86155 0.90901 0.88896 0.92209 0.95581 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.49 37.16 0.35 -1.65 16 2 C 0.07 1.27 3.31 -66.35 -0.22 1.05 16 3 H 0.07 1.09 7.76 -51.93 -0.40 0.68 16 4 C -0.08 -1.55 6.51 -26.58 -0.17 -1.73 16 5 C -0.26 -5.94 6.24 -103.65 -0.65 -6.58 16 6 C -0.08 -1.82 10.00 -39.74 -0.40 -2.21 16 7 C -0.17 -4.49 8.70 -38.84 -0.34 -4.83 16 8 C 0.12 3.29 5.57 -106.93 -0.60 2.70 16 9 C -0.46 -12.36 9.04 -37.74 -0.34 -12.70 16 10 H 0.08 2.03 7.91 -52.48 -0.42 1.61 16 11 C 0.08 1.93 5.14 -17.35 -0.09 1.84 16 12 N -0.79 -20.58 10.96 55.55 0.61 -19.97 16 13 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 15 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 16 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 17 C -0.21 -5.30 9.81 -38.57 -0.38 -5.68 16 18 C 0.10 2.40 5.52 -83.43 -0.46 1.94 16 19 N -0.49 -9.82 5.00 -169.41 -0.85 -10.67 16 20 C 0.03 0.58 9.29 60.07 0.56 1.13 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.06 1.07 7.92 -51.93 -0.41 0.65 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 27 H 0.12 3.25 6.16 -52.48 -0.32 2.93 16 28 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 29 H 0.09 2.31 8.06 -52.49 -0.42 1.88 16 30 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 266.61 15.07 4.02 4.02 Total: -1.00 -27.87 266.61 -8.47 -36.34 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.49 Total: 3.29 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -2.73 Total: -26.72 kcal Atomic # 7 Polarization: -30.40 SS G_CDS: -0.24 Total: -30.64 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.87 -8.47 -36.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191544.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.092 kcal (2) G-P(sol) polarization free energy of solvation -27.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds